ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags26a05
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC122910.5| Mus musculus BAC clone RP23-54P3 from chromosome ... 48 0.031
2gb|AC125353.2| Mus musculus BAC clone RP23-455B17 from 6, comple... 48 0.031
3gb|AC147648.4| Homo sapiens BAC clone RP11-1413M17 from UL, comp... 44 0.49
4gb|AC145613.2| Homo sapiens BAC clone RP11-1266H24 from UL, comp... 44 0.49
5gb|AC138015.24| Medicago truncatula clone mth2-34m6, complete se... 44 0.49
6emb|AL360176.22| Human DNA sequence from clone RP11-124H7 on chr... 44 0.49
7gb|AC143337.27| Medicago truncatula clone mth2-35d19, complete s... 44 0.49
8gb|AF295534.1|AF295534 Toxoplasma gondii phosphoglucomutase/para... 44 0.49
9gb|AC010092.4| Homo sapiens BAC clone RP11-306M1 from 2, complet... 44 0.49
10emb|BX546479.5| Human DNA sequence from clone RP11-438N17 on chr... 44 0.49
11emb|AL671532.13| Human DNA sequence from clone RP11-512A4 on chr... 44 0.49
12gb|AC111134.10| Mus musculus chromosome 3, clone RP23-349J3, com... 42 1.9
13gb|AC151132.3| Bos taurus BAC CH240-106N15 (Children's Hospital... 42 1.9
14emb|CT009661.10| Mouse DNA sequence from clone CH29-621D18 on ch... 42 1.9
15gb|AC118004.6| Mus musculus chromosome 16, clone RP23-212P2, com... 42 1.9
16gb|AC157380.6| Mus musculus chromosome 3, clone RP23-404C21, com... 42 1.9
17emb|AL121997.7|HSJ1043F6 Human DNA sequence from clone RP5-1043F... 42 1.9
18emb|CR457462.13| Zebrafish DNA sequence from clone CH211-1O7 in ... 42 1.9
19gb|AC114668.12| Mus musculus chromosome 3, clone RP24-176P19, co... 42 1.9
20dbj|AB252389.1| Uncultured rumen bacterium frdA gene for putativ... 42 1.9
21gb|AC109483.3| Homo sapiens chromosome 5 clone RP11-500H9, compl... 42 1.9
22gb|AC092801.2| Homo sapiens chromosome 1 clone RP11-36N20, compl... 42 1.9
23gb|AC096575.1| Homo sapiens BAC clone RP11-521E5 from 4, complet... 42 1.9
24gb|AC009334.8| Homo sapiens chromosome 1, clone RP11-45L2, compl... 42 1.9
25gb|AC091893.3| Homo sapiens chromosome 5 clone RP11-12P19, compl... 42 1.9
26emb|AL935117.16| Zebrafish DNA sequence from clone CH211-197G22 ... 42 1.9
27emb|CT485615.6| Mouse DNA sequence from clone RP23-32L22 on chro... 42 1.9
28gb|AC170998.2| Mus musculus BAC clone RP24-137E7 from chromosome... 42 1.9
29gb|AC114666.31| Mus musculus chromosome 5, clone RP24-175N6, com... 40 7.6
30gb|AC110525.10| Mus musculus chromosome 8, clone RP23-82N11, com... 40 7.6
31gb|DQ224248.1| Brachypelma emelia isolate MTA031a cytochrome c o... 40 7.6
32gb|CP000057.1| Haemophilus influenzae strain 86-028NP, complete ... 40 7.6
33gb|AC102410.5| Mus musculus chromosome 18, clone RP24-369O1, com... 40 7.6
34gb|AC163297.4| Mus musculus BAC clone RP23-106G24 from chromosom... 40 7.6
35gb|AC118472.8| Mus musculus chromosome 19, clone RP23-187N14, co... 40 7.6
36gb|AC150488.2| Bos taurus BAC CH240-466B8 (Children's Hospital ... 40 7.6
37gb|AC149669.2| Bos taurus BAC CH240-57J21 (Children's Hospital ... 40 7.6
38gb|AC107763.25| Mus musculus chromosome 5, clone RP23-180F3, com... 40 7.6
39gb|AF233439.7| Homo sapiens chromosome 8 clones GS1-24F4, CTD-26... 40 7.6
40gb|AC111110.21| Mus musculus chromosome 1, clone RP23-201B13, co... 40 7.6
41emb|CR962127.1| Medicago truncatula chromosome 5 clone mth2-181n... 40 7.6
42gb|AC124429.4| Mus musculus BAC clone RP24-239N4 from chromosome... 40 7.6
43gb|AC122219.3| Mus musculus BAC clone RP23-119F18 from 3, comple... 40 7.6
44emb|AJ245480.1|BNA245480 Brassica napus subsp. napus AtPP-A14 ge... 40 7.6
45ref|XM_846392.1| PREDICTED: Canis familiaris similar to nuclear ... 40 7.6
46ref|XM_536653.2| PREDICTED: Canis familiaris similar to nuclear ... 40 7.6
47ref|XM_858633.1| PREDICTED: Canis familiaris similar to nuclear ... 40 7.6
48ref|XM_858611.1| PREDICTED: Canis familiaris similar to nuclear ... 40 7.6
49ref|XM_721576.1| Plasmodium yoelii yoelii str. 17XNL hypothetica... 40 7.6
50ref|XM_535332.2| PREDICTED: Canis familiaris similar to putative... 40 7.6
51gb|AC144484.5| Medicago truncatula clone mth2-30o16, complete se... 40 7.6
52gb|AC152818.17| Medicago truncatula clone mth2-85g12, complete s... 40 7.6
53emb|AL591543.22| Human DNA sequence from clone RP13-198D9 on chr... 40 7.6
54gb|AY191584.1| Mus musculus desmoglein 4 (Dsg4) mRNA, complete cds 40 7.6
55gb|AY227349.1| Mus musculus desmoglein 4 (Dsg4) mRNA, complete cds 40 7.6
56emb|CR382126.1| Kluyveromyces lactis strain NRRL Y-1140 chromoso... 40 7.6
57gb|AC158350.7| Mus musculus chromosome 8, clone RP24-250A3, comp... 40 7.6
58emb|CR354613.7| Zebrafish DNA sequence from clone CH211-112G7 in... 40 7.6
59dbj|AP007162.1| Aspergillus oryzae RIB40 genomic DNA, SC102 40 7.6
60dbj|AB232924.1| Oryzias latipes hox gene cluster, complete cds, ... 40 7.6
61gb|AC099059.2| Homo sapiens chromosome 3 clone RP11-756A10, comp... 40 7.6
62gb|AC055707.33| Homo sapiens 12 BAC RP11-877E17 (Roswell Park Ca... 40 7.6
63gb|AC011270.9| Homo sapiens chromosome 15, clone RP11-5O23, comp... 40 7.6
64gb|AC108060.3| Homo sapiens BAC clone RP11-413M22 from 4, comple... 40 7.6
65ref|NM_181564.2| Mus musculus desmoglein 4 (Dsg4), mRNA 40 7.6
66ref|XM_626253.1| Cryptosporidium parvum Iowa II secreted lipopol... 40 7.6
67gb|AC020979.6| Homo sapiens chromosome 5 clone RP1_166C2, comple... 40 7.6
68dbj|AK042002.1| Mus musculus 3 days neonate thymus cDNA, RIKEN f... 40 7.6
69gb|AC149379.2| Phakopsora pachyrhizi clone JGIAFNA-5A5, complete... 40 7.6
70dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.6
71dbj|AB060897.1| Macaca fascicularis brain cDNA clone:QtrA-13767,... 40 7.6
72dbj|AP003569.3| Oryza sativa (japonica cultivar-group) genomic D... 40 7.6
73dbj|AP003513.2| Oryza sativa (japonica cultivar-group) genomic D... 40 7.6
74gb|AC110266.15| Mus musculus chromosome 1, clone RP23-319C1, com... 40 7.6
75emb|BX005372.6| Zebrafish DNA sequence from clone DKEY-76K16, co... 40 7.6
76gb|AC154100.7| Mus musculus chromosome 5, clone RP24-154F3, comp... 40 7.6
77dbj|AK104849.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 7.6
78dbj|AK073517.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 7.6
79dbj|AK066970.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 7.6
80emb|AL929577.9| Mouse DNA sequence from clone RP23-455B1 on chro... 40 7.6
81gb|L42023.1| Haemophilus influenzae Rd KW20, complete genome 40 7.6
82gb|BC109009.1| Mus musculus cDNA clone MGC:124398 IMAGE:40048538... 40 7.6
83gb|AC166328.4| Mus musculus BAC clone RP23-31H5 from chromosome ... 40 7.6
84gb|CP000103.1| Nitrosospira multiformis ATCC 25196, complete genome 40 7.6
85gb|M27212.1|DVUHYDFE D.vulgaris [Fe]-hydrogenase alpha and beta ... 40 7.6 
>gb|AC122910.5| Mus musculus BAC clone RP23-54P3 from chromosome 6, complete sequence
          Length = 221390

 Score = 48.1 bits (24), Expect = 0.031
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                     
Query: 159   actcctttcatctttgtttttgtt 182
             ||||||||||||||||||||||||
Sbjct: 18976 actcctttcatctttgtttttgtt 18953
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>gb|AC125353.2| Mus musculus BAC clone RP23-455B17 from 6, complete sequence
          Length = 171963

 Score = 48.1 bits (24), Expect = 0.031
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                     
Query: 159   actcctttcatctttgtttttgtt 182
             ||||||||||||||||||||||||
Sbjct: 39961 actcctttcatctttgtttttgtt 39984
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>gb|AC147648.4| Homo sapiens BAC clone RP11-1413M17 from UL, complete sequence
          Length = 188992

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 164   tttcatctttgtttttgttggtttta 189
             |||||| |||||||||||||||||||
Sbjct: 68487 tttcatttttgtttttgttggtttta 68512
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>gb|AC145613.2| Homo sapiens BAC clone RP11-1266H24 from UL, complete sequence
          Length = 178925

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 164   tttcatctttgtttttgttggtttta 189
             |||||| |||||||||||||||||||
Sbjct: 45278 tttcatttttgtttttgttggtttta 45303
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>gb|AC138015.24| Medicago truncatula clone mth2-34m6, complete sequence
          Length = 126845

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 167   catctttgtttttgttggtttt 188
             ||||||||||||||||||||||
Sbjct: 54389 catctttgtttttgttggtttt 54368
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>emb|AL360176.22| Human DNA sequence from clone RP11-124H7 on chromosome 10 Contains the 5'
              end of the MMP21 gene for matrix metalloproteinase 21, the
              UROS gene for uroporphyrinogen III synthase (congenital
              erythropoietic porphyria), the BCCIP gene for BRCA2 and
              CDKN1A interacting protein (TOK-1), the DDX32 gene for
              DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 32 (FLJ10694,
              FLJ10889), the 5' UTR of a novel gene (LOC92565) and three
              CpG islands, complete sequence
          Length = 155699

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 164    tttcatctttgtttttgttggtttta 189
              |||||| |||||||||||||||||||
Sbjct: 128468 tttcatttttgtttttgttggtttta 128443
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>gb|AC143337.27| Medicago truncatula clone mth2-35d19, complete sequence
          Length = 118139

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 167   catctttgtttttgttggtttt 188
             ||||||||||||||||||||||
Sbjct: 80532 catctttgtttttgttggtttt 80553
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>gb|AF295534.1|AF295534 Toxoplasma gondii phosphoglucomutase/parafusin related protein 1
            (PRP1) mRNA, complete cds
          Length = 2294

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 291  tccatttctttcaagagattct 312
            ||||||||||||||||||||||
Sbjct: 1773 tccatttctttcaagagattct 1752
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>gb|AC010092.4| Homo sapiens BAC clone RP11-306M1 from 2, complete sequence
          Length = 140226

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 170   ctttgtttttgttggttttatt 191
             ||||||||||||||||||||||
Sbjct: 24696 ctttgtttttgttggttttatt 24675
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>emb|BX546479.5| Human DNA sequence from clone RP11-438N17 on chromosome 22, complete
             sequence
          Length = 172294

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 164   tttcatctttgtttttgttggtttta 189
             |||||| |||||||||||||||||||
Sbjct: 92104 tttcatttttgtttttgttggtttta 92079
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>emb|AL671532.13| Human DNA sequence from clone RP11-512A4 on chromosome 22, complete
              sequence
          Length = 211173

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 164    tttcatctttgtttttgttggtttta 189
              |||||| |||||||||||||||||||
Sbjct: 180158 tttcatttttgtttttgttggtttta 180183
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>gb|AC111134.10| Mus musculus chromosome 3, clone RP23-349J3, complete sequence
          Length = 223171

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 171    tttgtttttgttggttttatt 191
              |||||||||||||||||||||
Sbjct: 214535 tttgtttttgttggttttatt 214515
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>gb|AC151132.3| Bos taurus  BAC CH240-106N15 (Children's Hospital Oakland Research
              Institute Bovine BAC Library (male)) complete sequence
          Length = 171239

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 169    tctttgtttttgttggtttta 189
              |||||||||||||||||||||
Sbjct: 159697 tctttgtttttgttggtttta 159677
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>emb|CT009661.10| Mouse DNA sequence from clone CH29-621D18 on chromosome 17, complete
              sequence
          Length = 224982

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 533    ctcctttgttgcccttctgttcacc 557
              ||||||||||| |||||||||||||
Sbjct: 130085 ctcctttgttgtccttctgttcacc 130109
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>gb|AC118004.6| Mus musculus chromosome 16, clone RP23-212P2, complete sequence
          Length = 205796

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 37     aaataactttttcatactgca 57
              |||||||||||||||||||||
Sbjct: 144239 aaataactttttcatactgca 144219
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>gb|AC157380.6| Mus musculus chromosome 3, clone RP23-404C21, complete sequence
          Length = 196528

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 171   tttgtttttgttggttttatt 191
             |||||||||||||||||||||
Sbjct: 96011 tttgtttttgttggttttatt 96031
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>emb|AL121997.7|HSJ1043F6 Human DNA sequence from clone RP5-1043F6 on chromosome 1q42.11-42.3
             Contains part of the CHS1 gene for Chediak-Higashi
             syndrome 1 protein and a lactate dehydrogenase A (LDHA)
             processed pseudogene, complete sequence
          Length = 114526

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 464   gtttcacttctttgtattcca 484
             |||||||||||||||||||||
Sbjct: 87619 gtttcacttctttgtattcca 87599
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>emb|CR457462.13| Zebrafish DNA sequence from clone CH211-1O7 in linkage group 13,
             complete sequence
          Length = 166823

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 28    atagatatgaaataacttttt 48
             |||||||||||||||||||||
Sbjct: 61232 atagatatgaaataacttttt 61212
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>gb|AC114668.12| Mus musculus chromosome 3, clone RP24-176P19, complete sequence
          Length = 183890

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 171   tttgtttttgttggttttatt 191
             |||||||||||||||||||||
Sbjct: 28809 tttgtttttgttggttttatt 28789
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>dbj|AB252389.1| Uncultured rumen bacterium frdA gene for putative fumarate
           reductase, partial cds, clone:Uc071
          Length = 351

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 305 gagattctgctgggtcaacac 325
           |||||||||||||||||||||
Sbjct: 312 gagattctgctgggtcaacac 292
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>gb|AC109483.3| Homo sapiens chromosome 5 clone RP11-500H9, complete sequence
          Length = 70474

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 184   gttttattcctgaaagctttc 204
             |||||||||||||||||||||
Sbjct: 22367 gttttattcctgaaagctttc 22387
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>gb|AC092801.2| Homo sapiens chromosome 1 clone RP11-36N20, complete sequence
          Length = 151199

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                              
Query: 265   aatggccagcacaatccagctgacactccattt 297
             |||||||||||||||||  |||| |||||||||
Sbjct: 45023 aatggccagcacaatcccactgaaactccattt 45055
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>gb|AC096575.1| Homo sapiens BAC clone RP11-521E5 from 4, complete sequence
          Length = 180423

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 172    ttgtttttgttggttttattc 192
              |||||||||||||||||||||
Sbjct: 142361 ttgtttttgttggttttattc 142381
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>gb|AC009334.8| Homo sapiens chromosome 1, clone RP11-45L2, complete sequence
          Length = 165618

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 464   gtttcacttctttgtattcca 484
             |||||||||||||||||||||
Sbjct: 63077 gtttcacttctttgtattcca 63057
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>gb|AC091893.3| Homo sapiens chromosome 5 clone RP11-12P19, complete sequence
          Length = 154364

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 184    gttttattcctgaaagctttc 204
              |||||||||||||||||||||
Sbjct: 143339 gttttattcctgaaagctttc 143359
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>emb|AL935117.16| Zebrafish DNA sequence from clone CH211-197G22 in linkage group 18,
             complete sequence
          Length = 213808

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 40    taactttttcatactgcaatg 60
             |||||||||||||||||||||
Sbjct: 54206 taactttttcatactgcaatg 54226
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>emb|CT485615.6| Mouse DNA sequence from clone RP23-32L22 on chromosome 16, complete
              sequence
          Length = 197249

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 37     aaataactttttcatactgca 57
              |||||||||||||||||||||
Sbjct: 186459 aaataactttttcatactgca 186479
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>gb|AC170998.2| Mus musculus BAC clone RP24-137E7 from chromosome 17, complete sequence
          Length = 148715

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 533   ctcctttgttgcccttctgttcacc 557
             ||||||||||| |||||||||||||
Sbjct: 89562 ctcctttgttgtccttctgttcacc 89538
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>gb|AC114666.31| Mus musculus chromosome 5, clone RP24-175N6, complete sequence
          Length = 193158

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 171    tttgtttttgttggttttattcct 194
              |||||||||||||||||| |||||
Sbjct: 156777 tttgtttttgttggtttttttcct 156800
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>gb|AC110525.10| Mus musculus chromosome 8, clone RP23-82N11, complete sequence
          Length = 153281

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                             
Query: 171   tttgtttttgttggttttattcctgaaagctt 202
             |||||||||||| ||||| || ||||||||||
Sbjct: 69649 tttgtttttgtttgttttttttctgaaagctt 69618
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>gb|DQ224248.1| Brachypelma emelia isolate MTA031a cytochrome c oxidase subunit 1
           (CO1) gene, partial cds; mitochondrial
          Length = 205

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 169 tctttgtttttgttggtttt 188
           ||||||||||||||||||||
Sbjct: 46  tctttgtttttgttggtttt 65
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>gb|CP000057.1| Haemophilus influenzae strain 86-028NP, complete genome
          Length = 1913428

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 505     tgcggtagaaatttgccaag 524
               ||||||||||||||||||||
Sbjct: 1119462 tgcggtagaaatttgccaag 1119443
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>gb|AC102410.5| Mus musculus chromosome 18, clone RP24-369O1, complete sequence
          Length = 164142

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 359   cttcttcatccagatcgatt 378
             ||||||||||||||||||||
Sbjct: 83204 cttcttcatccagatcgatt 83185
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>gb|AC163297.4| Mus musculus BAC clone RP23-106G24 from chromosome 3, complete sequence
          Length = 194271

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 163   ctttcatctttgtttttgtt 182
             ||||||||||||||||||||
Sbjct: 81643 ctttcatctttgtttttgtt 81662
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>gb|AC118472.8| Mus musculus chromosome 19, clone RP23-187N14, complete sequence
          Length = 222869

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 481   tccactgctggagaggaatg 500
             ||||||||||||||||||||
Sbjct: 63803 tccactgctggagaggaatg 63822
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>gb|AC150488.2| Bos taurus  BAC CH240-466B8 (Children's Hospital Oakland Research
              Institute Bovine BAC Library (male)) complete sequence
          Length = 135467

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 172    ttgtttttgttggttttatt 191
              ||||||||||||||||||||
Sbjct: 135324 ttgtttttgttggttttatt 135305
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>gb|AC149669.2| Bos taurus  BAC CH240-57J21 (Children's Hospital Oakland Research
              Institute Bovine BAC Library (male)) complete sequence
          Length = 227069

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 289    actccatttctttcaagagattct 312
              ||||||||||||||||| ||||||
Sbjct: 183136 actccatttctttcaagggattct 183159
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>gb|AC107763.25| Mus musculus chromosome 5, clone RP23-180F3, complete sequence
          Length = 219488

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 170    ctttgtttttgttggtttta 189
              ||||||||||||||||||||
Sbjct: 208825 ctttgtttttgttggtttta 208806
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>gb|AF233439.7| Homo sapiens chromosome 8 clones GS1-24F4, CTD-2629I16 map p23.1,
             complete sequences
          Length = 231283

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 168   atctttgtttttgttggttt 187
             ||||||||||||||||||||
Sbjct: 26492 atctttgtttttgttggttt 26511
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>gb|AC111110.21| Mus musculus chromosome 1, clone RP23-201B13, complete sequence
          Length = 246043

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 170   ctttgtttttgttggtttta 189
             ||||||||||||||||||||
Sbjct: 71578 ctttgtttttgttggtttta 71597
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>emb|CR962127.1| Medicago truncatula chromosome 5 clone mth2-181n9, COMPLETE SEQUENCE
          Length = 119528

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 170   ctttgtttttgttggttttattcc 193
             |||||||||||||| |||||||||
Sbjct: 74824 ctttgtttttgttgattttattcc 74847
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>gb|AC124429.4| Mus musculus BAC clone RP24-239N4 from chromosome 13, complete sequence
          Length = 168858

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 172    ttgtttttgttggttttatt 191
              ||||||||||||||||||||
Sbjct: 106483 ttgtttttgttggttttatt 106502
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>gb|AC122219.3| Mus musculus BAC clone RP23-119F18 from 3, complete sequence
          Length = 196563

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 163   ctttcatctttgtttttgtt 182
             ||||||||||||||||||||
Sbjct: 10385 ctttcatctttgtttttgtt 10366
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>emb|AJ245480.1|BNA245480 Brassica napus subsp. napus AtPP-A14 gene for putative S-adenosyl
             methionine salycilic acid carboxyl methionyl transferase
             and slg gene for S-locus glycoprotein, cultivar T2
          Length = 87844

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 163   ctttcatctttgtttttgttggttttat 190
             ||||| |||| |||||||||||||||||
Sbjct: 66518 ctttcttcttcgtttttgttggttttat 66545
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>ref|XM_846392.1| PREDICTED: Canis familiaris similar to nuclear receptor co-repressor
            1, transcript variant 2 (LOC479515), mRNA
          Length = 7723

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 172  ttgtttttgttggttttatt 191
            ||||||||||||||||||||
Sbjct: 7665 ttgtttttgttggttttatt 7684
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>ref|XM_536653.2| PREDICTED: Canis familiaris similar to nuclear receptor co-repressor
            1, transcript variant 1 (LOC479515), mRNA
          Length = 8332

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 172  ttgtttttgttggttttatt 191
            ||||||||||||||||||||
Sbjct: 7485 ttgtttttgttggttttatt 7504
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>ref|XM_858633.1| PREDICTED: Canis familiaris similar to nuclear receptor co-repressor
            1, transcript variant 4 (LOC479515), mRNA
          Length = 1581

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 172  ttgtttttgttggttttatt 191
            ||||||||||||||||||||
Sbjct: 1523 ttgtttttgttggttttatt 1542
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>ref|XM_858611.1| PREDICTED: Canis familiaris similar to nuclear receptor co-repressor
            1, transcript variant 3 (LOC479515), mRNA
          Length = 7675

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 172  ttgtttttgttggttttatt 191
            ||||||||||||||||||||
Sbjct: 7617 ttgtttttgttggttttatt 7636
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>ref|XM_721576.1| Plasmodium yoelii yoelii str. 17XNL hypothetical protein (PY06084)
           partial mRNA
          Length = 1296

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 172 ttgtttttgttggttttatt 191
           ||||||||||||||||||||
Sbjct: 608 ttgtttttgttggttttatt 589
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>ref|XM_535332.2| PREDICTED: Canis familiaris similar to putative S1 RNA binding
           domain protein (LOC478157), mRNA
          Length = 1560

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 202 ttctgctgactttgcctctt 221
           ||||||||||||||||||||
Sbjct: 604 ttctgctgactttgcctctt 585
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>gb|AC144484.5| Medicago truncatula clone mth2-30o16, complete sequence
          Length = 121144

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 167   catctttgtttttgttggtt 186
             ||||||||||||||||||||
Sbjct: 15858 catctttgtttttgttggtt 15877
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>gb|AC152818.17| Medicago truncatula clone mth2-85g12, complete sequence
          Length = 142154

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 167   catctttgtttttgttggtt 186
             ||||||||||||||||||||
Sbjct: 15860 catctttgtttttgttggtt 15879
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>emb|AL591543.22| Human DNA sequence from clone RP13-198D9 on chromosome 9 Contains a
             novel  gene (KIAA2015), a novel gene, a tyrosine
             3-monooxygenase/tryptophan 5-monooxygenase activation
             protein, beta polypeptide (YWHAB) pseudogene and two CpG
             islands, complete sequence
          Length = 179501

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 418   ggcaatttcctcttcttgaa 437
             ||||||||||||||||||||
Sbjct: 25302 ggcaatttcctcttcttgaa 25283
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>gb|AY191584.1| Mus musculus desmoglein 4 (Dsg4) mRNA, complete cds
          Length = 3478

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 359  cttcttcatccagatcgatt 378
            ||||||||||||||||||||
Sbjct: 1029 cttcttcatccagatcgatt 1010
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>gb|AY227349.1| Mus musculus desmoglein 4 (Dsg4) mRNA, complete cds
          Length = 3126

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 359 cttcttcatccagatcgatt 378
           ||||||||||||||||||||
Sbjct: 895 cttcttcatccagatcgatt 876
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>emb|CR382126.1| Kluyveromyces lactis strain NRRL Y-1140 chromosome F of strain NRRL Y-1140
               of Kluyveromyces lactis
          Length = 2602197

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 165     ttcatctttgtttttgttggtttt 188
               ||||||||||||||| ||||||||
Sbjct: 1944493 ttcatctttgttttttttggtttt 1944470
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>gb|AC158350.7| Mus musculus chromosome 8, clone RP24-250A3, complete sequence
          Length = 174965

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                              
Query: 171    tttgtttttgttggttttattcctgaaagctt 202
              |||||||||||| ||||| || ||||||||||
Sbjct: 165250 tttgtttttgtttgttttttttctgaaagctt 165219
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>emb|CR354613.7| Zebrafish DNA sequence from clone CH211-112G7 in linkage group 21,
              complete sequence
          Length = 179432

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 164    tttcatctttgtttttgttggttttatt 191
              ||||||||||||| |||||| |||||||
Sbjct: 165195 tttcatctttgttattgttgtttttatt 165222
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>dbj|AP007162.1| Aspergillus oryzae RIB40 genomic DNA, SC102
          Length = 1779707

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 347     acagtacaacttcttcttca 366
               ||||||||||||||||||||
Sbjct: 1083847 acagtacaacttcttcttca 1083866
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>dbj|AB232924.1| Oryzias latipes hox gene cluster, complete cds, contains hoxDb
          Length = 220448

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 163   ctttcatctttgtttttgtt 182
             ||||||||||||||||||||
Sbjct: 77885 ctttcatctttgtttttgtt 77904
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>gb|AC099059.2| Homo sapiens chromosome 3 clone RP11-756A10, complete sequence
          Length = 158576

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 172    ttgtttttgttggttttatt 191
              ||||||||||||||||||||
Sbjct: 116409 ttgtttttgttggttttatt 116428
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>gb|AC055707.33| Homo sapiens 12 BAC RP11-877E17 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 138370

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 172   ttgtttttgttggttttatt 191
             ||||||||||||||||||||
Sbjct: 41430 ttgtttttgttggttttatt 41411
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>gb|AC011270.9| Homo sapiens chromosome 15, clone RP11-5O23, complete sequence
          Length = 149762

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 33     tatgaaataactttttcata 52
              ||||||||||||||||||||
Sbjct: 102544 tatgaaataactttttcata 102525
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>gb|AC108060.3| Homo sapiens BAC clone RP11-413M22 from 4, complete sequence
          Length = 138302

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 466   ttcacttctttgtattccac 485
             ||||||||||||||||||||
Sbjct: 46985 ttcacttctttgtattccac 46966
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>ref|NM_181564.2| Mus musculus desmoglein 4 (Dsg4), mRNA
          Length = 3478

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 359  cttcttcatccagatcgatt 378
            ||||||||||||||||||||
Sbjct: 1029 cttcttcatccagatcgatt 1010
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>ref|XM_626253.1| Cryptosporidium parvum Iowa II secreted lipopolysaccharide sugar
           transferase like family 8 glycosyltransferase
           (cgd5_3260), partial mRNA
          Length = 516

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 32  atatgaaataactttttcat 51
           ||||||||||||||||||||
Sbjct: 159 atatgaaataactttttcat 178
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>gb|AC020979.6| Homo sapiens chromosome 5 clone RP1_166C2, complete sequence
          Length = 82078

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 164   tttcatctttgtttttgttggttt 187
             ||||||||||||||||||| ||||
Sbjct: 55303 tttcatctttgtttttgtttgttt 55326
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>dbj|AK042002.1| Mus musculus 3 days neonate thymus cDNA, RIKEN full-length enriched
            library, clone:A630051L19 product:unclassifiable, full
            insert sequence
          Length = 3638

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 164  tttcatctttgtttttgttggttttatt 191
            |||||| |||||||||||| ||||||||
Sbjct: 2983 tttcatttttgtttttgtttgttttatt 3010
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>gb|AC149379.2| Phakopsora pachyrhizi clone JGIAFNA-5A5, complete sequence
          Length = 36566

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 172   ttgtttttgttggttttatt 191
             ||||||||||||||||||||
Sbjct: 26059 ttgtttttgttggttttatt 26078
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 291     tccatttctttcaagagatt 310
               ||||||||||||||||||||
Sbjct: 6607986 tccatttctttcaagagatt 6607967
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>dbj|AB060897.1| Macaca fascicularis brain cDNA clone:QtrA-13767, similar to human
           putative S1 RNA binding domain protein (PS1D), mRNA,
           NM_016505.2
          Length = 1716

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 202 ttctgctgactttgcctctt 221
           ||||||||||||||||||||
Sbjct: 697 ttctgctgactttgcctctt 678
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>dbj|AP003569.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0425F05
          Length = 162858

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 291   tccatttctttcaagagatt 310
             ||||||||||||||||||||
Sbjct: 42112 tccatttctttcaagagatt 42093
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>dbj|AP003513.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0690H04
          Length = 137319

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 291    tccatttctttcaagagatt 310
              ||||||||||||||||||||
Sbjct: 124362 tccatttctttcaagagatt 124343
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>gb|AC110266.15| Mus musculus chromosome 1, clone RP23-319C1, complete sequence
          Length = 177482

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 170    ctttgtttttgttggtttta 189
              ||||||||||||||||||||
Sbjct: 169348 ctttgtttttgttggtttta 169367
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>emb|BX005372.6| Zebrafish DNA sequence from clone DKEY-76K16, complete sequence
          Length = 199736

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 33     tatgaaataactttttcata 52
              ||||||||||||||||||||
Sbjct: 175630 tatgaaataactttttcata 175611
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>gb|AC154100.7| Mus musculus chromosome 5, clone RP24-154F3, complete sequence
          Length = 200945

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 170 ctttgtttttgttggtttta 189
           ||||||||||||||||||||
Sbjct: 79  ctttgtttttgttggtttta 60
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>dbj|AK104849.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-043-A01, full
           insert sequence
          Length = 1063

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 291 tccatttctttcaagagatt 310
           ||||||||||||||||||||
Sbjct: 262 tccatttctttcaagagatt 281
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>dbj|AK073517.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033040I03, full
            insert sequence
          Length = 2636

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 291  tccatttctttcaagagatt 310
            ||||||||||||||||||||
Sbjct: 1820 tccatttctttcaagagatt 1839
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>dbj|AK066970.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013089B21, full
            insert sequence
          Length = 2977

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 291  tccatttctttcaagagatt 310
            ||||||||||||||||||||
Sbjct: 1772 tccatttctttcaagagatt 1791
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>emb|AL929577.9| Mouse DNA sequence from clone RP23-455B1 on chromosome 4, complete
             sequence
          Length = 152910

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 164   tttcatctttgtttttgttggttttatt 191
             |||||| |||||||||||| ||||||||
Sbjct: 92964 tttcatttttgtttttgtttgttttatt 92937
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>gb|L42023.1| Haemophilus influenzae Rd KW20, complete genome
          Length = 1830138

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 505     tgcggtagaaatttgccaag 524
               ||||||||||||||||||||
Sbjct: 1063207 tgcggtagaaatttgccaag 1063188
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>gb|BC109009.1| Mus musculus cDNA clone MGC:124398 IMAGE:40048538, complete cds
          Length = 3407

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 359  cttcttcatccagatcgatt 378
            ||||||||||||||||||||
Sbjct: 1029 cttcttcatccagatcgatt 1010
to top
>gb|AC166328.4| Mus musculus BAC clone RP23-31H5 from chromosome 5, complete sequence
          Length = 215189

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 171   tttgtttttgttggttttattcct 194
             |||||||||||||||||| |||||
Sbjct: 24238 tttgtttttgttggtttttttcct 24261
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>gb|CP000103.1| Nitrosospira multiformis ATCC 25196, complete genome
          Length = 3184243

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                           
Query: 170     ctttgtttttgttggttttattcctgaa 197
               |||| ||||| |||||||||||||||||
Sbjct: 1791852 ctttattttttttggttttattcctgaa 1791825
to top
>gb|M27212.1|DVUHYDFE D.vulgaris [Fe]-hydrogenase alpha and beta subunit genes, complete
           cds
          Length = 1964

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 358 tcttcttcatccagatcgat 377
           ||||||||||||||||||||
Sbjct: 310 tcttcttcatccagatcgat 329


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,033,019
Number of Sequences: 3902068
Number of extensions: 6033019
Number of successful extensions: 153323
Number of sequences better than 10.0: 85
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 153050
Number of HSP's gapped (non-prelim): 273
length of query: 561
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 538
effective length of database: 17,143,297,704
effective search space: 9223094164752
effective search space used: 9223094164752
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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