ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags25l02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1US10_HHV11 (P06486) Virion protein US10 31 2.2
2LET23_CAEEL (P24348) Receptor tyrosine-protein kinase let-23 pre... 30 4.9

>US10_HHV11 (P06486) Virion protein US10|
          Length = 312

 Score = 31.2 bits (69), Expect = 2.2
 Identities = 31/92 (33%), Positives = 41/92 (44%), Gaps = 5/92 (5%)
 Frame = -3

Query: 452 RNSVHSNIAVPPEXSPQRLHLLEHSGD----XDPGHY-AEHPLLRXLVAEKGDERVAYRR 288
           R  +H+ + VPP  SP   HL +  GD     D G Y  +   L  LV    D R A+ R
Sbjct: 136 RVGIHTAVRVPPTGSPTHTHLRQDPGDEPTSDDSGLYPLDARALAHLVMLPADHR-AFFR 194

Query: 287 NTSCPGRVERARVRGRHDGL*ESMVGRYQARL 192
                 R+  A VR        +M+GR+ ARL
Sbjct: 195 TVVEVSRMCAANVRDPPPPATGAMLGRH-ARL 225



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>LET23_CAEEL (P24348) Receptor tyrosine-protein kinase let-23 precursor (EC|
           2.7.10.1) (Lethal protein 23)
          Length = 1367

 Score = 30.0 bits (66), Expect = 4.9
 Identities = 19/66 (28%), Positives = 27/66 (40%), Gaps = 10/66 (15%)
 Frame = +3

Query: 255 CTLHPSRT*SIPAICHALITLFGNQXSQEWMFCI----------VSGIXIAGVLK*VQSL 404
           C  +P    SI  I    +T FGN  +Q W  C+           +GI   G    ++ L
Sbjct: 44  CMRYPPSIGSILLIIPIFLTFFGNSNAQLWKRCVSPQDCLCSGTTNGISRYGTGNILEDL 103

Query: 405 RTXFRG 422
            T +RG
Sbjct: 104 ETMYRG 109


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 73,359,225
Number of Sequences: 219361
Number of extensions: 1411195
Number of successful extensions: 4084
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 4009
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4083
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4815021120
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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