ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags25l02 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY104752.1| Zea mays PCO127123 mRNA sequence Length = 2262 Score = 161 bits (81), Expect = 3e-36 Identities = 265/328 (80%) Strand = Plus / Minus Query: 174 gctttcgtgagagggacaaagccgtgcctgatagcggccgaccatgctttctcagagtcc 233 |||||||| | ||| || || |||||||| ||||| || ||||||||||| |||| | | Sbjct: 1951 gctttcgtcaaaggaacgaatccgtgcctaatagcagctgaccatgctttgtcagcatgc 1892 Query: 234 atcatgtcgtccccgcactcgtgcacgctccacccttccaggacatgaagtattccggcg 293 | |||| ||||||| |||||||||||| |||||||||||||| | |||||||| ||| || Sbjct: 1891 accatggcgtccccacactcgtgcacggtccacccttccagggcgtgaagtatcccgccg 1832 Query: 294 atatgccacgcgctcatcacccttttcggcaaccagttntcgcaggagtggatgttctgc 353 || |||| ||||||||||||| | | |||| |||||| ||||||| ||||| || ||| Sbjct: 1831 atgcgccaggcgctcatcacccgtcttggcagccagttctcgcaggcatggatattttgc 1772 Query: 354 atagtgtccgggatcttnatcgccggagtgctcaagtaagtgcagtctttgcggactttn 413 || || || |||||||| || || |||||||||| ||| ||||| || ||||||| ||| Sbjct: 1771 atggtttcagggatcttcattgctggagtgctcaggtaggtgcaatccttgcggattttc 1712 Query: 414 ttcagggggaactgcgatattggaatgaacactgttccttttggngccatcctctgttct 473 || | ||||||||| || ||||| | ||| || | |||||| || |||||| ||||||| Sbjct: 1711 ttgatggggaactgtgagattgggacgaatacggctcctttcggtgccatcttctgttcc 1652 Query: 474 ttgtcctccatcctntctactaaccaaa 501 | ||| || || || ||||||| ||||| Sbjct: 1651 tcgtcgtcgatgctgtctactagccaaa 1624
>ref|XM_466799.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2481 Score = 143 bits (72), Expect = 7e-31 Identities = 206/252 (81%) Strand = Plus / Minus Query: 213 gaccatgctttctcagagtccatcatgtcgtccccgcactcgtgcacgctccacccttcc 272 ||||||| ||||||| |||||||| || ||||| |||||||||| | |||| |||||| Sbjct: 1925 gaccatgatttctcaatatccatcatctcatccccacactcgtgcatgttccatccttcc 1866 Query: 273 aggacatgaagtattccggcgatatgccacgcgctcatcacccttttcggcaaccagttn 332 || ||||||||||||| || || ||||| || |||||||||||| | || | ||| || Sbjct: 1865 agagcatgaagtattccagcaatgtgccaagcactcatcacccttcttggaagccaattc 1806 Query: 333 tcgcaggagtggatgttctgcatagtgtccgggatcttnatcgccggagtgctcaagtaa 392 |||||||||||||| |||| ||| ||||||||| | || || || ||||||| |||| Sbjct: 1805 tcgcaggagtggatattcttcatttcctccgggatcctcattgctggggtgctcatgtaa 1746 Query: 393 gtgcagtctttgcggactttnttcagggggaactgcgatattggaatgaacactgttcct 452 |||||||| ||||| | ||| || ||||||||||| ||||| ||||| || | ||||||| Sbjct: 1745 gtgcagtccttgcgaagtttcttaagggggaactgtgatatgggaataaaaattgttcct 1686 Query: 453 tttggngccatc 464 ||||| |||||| Sbjct: 1685 tttggcgccatc 1674 Score = 61.9 bits (31), Expect = 2e-06 Identities = 42/46 (91%) Strand = Plus / Minus Query: 528 ttcaagtagcttgctctgttctctggcatntgtgacttgagcatgt 573 ||||| |||||||| ||||||||||| || |||||||||||||||| Sbjct: 1610 ttcaaatagcttgccctgttctctggtatttgtgacttgagcatgt 1565
>dbj|AK066386.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013066F17, full insert sequence Length = 2481 Score = 143 bits (72), Expect = 7e-31 Identities = 206/252 (81%) Strand = Plus / Minus Query: 213 gaccatgctttctcagagtccatcatgtcgtccccgcactcgtgcacgctccacccttcc 272 ||||||| ||||||| |||||||| || ||||| |||||||||| | |||| |||||| Sbjct: 1925 gaccatgatttctcaatatccatcatctcatccccacactcgtgcatgttccatccttcc 1866 Query: 273 aggacatgaagtattccggcgatatgccacgcgctcatcacccttttcggcaaccagttn 332 || ||||||||||||| || || ||||| || |||||||||||| | || | ||| || Sbjct: 1865 agagcatgaagtattccagcaatgtgccaagcactcatcacccttcttggaagccaattc 1806 Query: 333 tcgcaggagtggatgttctgcatagtgtccgggatcttnatcgccggagtgctcaagtaa 392 |||||||||||||| |||| ||| ||||||||| | || || || ||||||| |||| Sbjct: 1805 tcgcaggagtggatattcttcatttcctccgggatcctcattgctggggtgctcatgtaa 1746 Query: 393 gtgcagtctttgcggactttnttcagggggaactgcgatattggaatgaacactgttcct 452 |||||||| ||||| | ||| || ||||||||||| ||||| ||||| || | ||||||| Sbjct: 1745 gtgcagtccttgcgaagtttcttaagggggaactgtgatatgggaataaaaattgttcct 1686 Query: 453 tttggngccatc 464 ||||| |||||| Sbjct: 1685 tttggcgccatc 1674 Score = 61.9 bits (31), Expect = 2e-06 Identities = 42/46 (91%) Strand = Plus / Minus Query: 528 ttcaagtagcttgctctgttctctggcatntgtgacttgagcatgt 573 ||||| |||||||| ||||||||||| || |||||||||||||||| Sbjct: 1610 ttcaaatagcttgccctgttctctggtatttgtgacttgagcatgt 1565
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 85.7 bits (43), Expect = 1e-13 Identities = 109/132 (82%) Strand = Plus / Plus Query: 333 tcgcaggagtggatgttctgcatagtgtccgggatcttnatcgccggagtgctcaagtaa 392 |||||||||||||| |||| ||| ||||||||| | || || || ||||||| |||| Sbjct: 24738206 tcgcaggagtggatattcttcatttcctccgggatcctcattgctggggtgctcatgtaa 24738265 Query: 393 gtgcagtctttgcggactttnttcagggggaactgcgatattggaatgaacactgttcct 452 |||||||| ||||| | ||| || ||||||||||| ||||| ||||| || | ||||||| Sbjct: 24738266 gtgcagtccttgcgaagtttcttaagggggaactgtgatatgggaataaaaattgttcct 24738325 Query: 453 tttggngccatc 464 ||||| |||||| Sbjct: 24738326 tttggcgccatc 24738337 Score = 73.8 bits (37), Expect = 6e-10 Identities = 88/105 (83%) Strand = Plus / Plus Query: 213 gaccatgctttctcagagtccatcatgtcgtccccgcactcgtgcacgctccacccttcc 272 ||||||| ||||||| |||||||| || ||||| |||||||||| | |||| |||||| Sbjct: 24737996 gaccatgatttctcaatatccatcatctcatccccacactcgtgcatgttccatccttcc 24738055 Query: 273 aggacatgaagtattccggcgatatgccacgcgctcatcaccctt 317 || ||||||||||||| || || ||||| || |||||||||||| Sbjct: 24738056 agagcatgaagtattccagcaatgtgccaagcactcatcaccctt 24738100 Score = 61.9 bits (31), Expect = 2e-06 Identities = 42/46 (91%) Strand = Plus / Plus Query: 528 ttcaagtagcttgctctgttctctggcatntgtgacttgagcatgt 573 ||||| |||||||| ||||||||||| || |||||||||||||||| Sbjct: 24738559 ttcaaatagcttgccctgttctctggtatttgtgacttgagcatgt 24738604 Score = 46.1 bits (23), Expect = 0.13 Identities = 29/31 (93%) Strand = Plus / Plus Query: 298 gccacgcgctcatcacccttttcggcaacca 328 ||||||||||||||||||| |||||||||| Sbjct: 34908549 gccacgcgctcatcaccctcctcggcaacca 34908579
>dbj|AP004059.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1372_D06 Length = 129242 Score = 85.7 bits (43), Expect = 1e-13 Identities = 109/132 (82%) Strand = Plus / Plus Query: 333 tcgcaggagtggatgttctgcatagtgtccgggatcttnatcgccggagtgctcaagtaa 392 |||||||||||||| |||| ||| ||||||||| | || || || ||||||| |||| Sbjct: 119604 tcgcaggagtggatattcttcatttcctccgggatcctcattgctggggtgctcatgtaa 119663 Query: 393 gtgcagtctttgcggactttnttcagggggaactgcgatattggaatgaacactgttcct 452 |||||||| ||||| | ||| || ||||||||||| ||||| ||||| || | ||||||| Sbjct: 119664 gtgcagtccttgcgaagtttcttaagggggaactgtgatatgggaataaaaattgttcct 119723 Query: 453 tttggngccatc 464 ||||| |||||| Sbjct: 119724 tttggcgccatc 119735 Score = 73.8 bits (37), Expect = 6e-10 Identities = 88/105 (83%) Strand = Plus / Plus Query: 213 gaccatgctttctcagagtccatcatgtcgtccccgcactcgtgcacgctccacccttcc 272 ||||||| ||||||| |||||||| || ||||| |||||||||| | |||| |||||| Sbjct: 119394 gaccatgatttctcaatatccatcatctcatccccacactcgtgcatgttccatccttcc 119453 Query: 273 aggacatgaagtattccggcgatatgccacgcgctcatcaccctt 317 || ||||||||||||| || || ||||| || |||||||||||| Sbjct: 119454 agagcatgaagtattccagcaatgtgccaagcactcatcaccctt 119498 Score = 61.9 bits (31), Expect = 2e-06 Identities = 42/46 (91%) Strand = Plus / Plus Query: 528 ttcaagtagcttgctctgttctctggcatntgtgacttgagcatgt 573 ||||| |||||||| ||||||||||| || |||||||||||||||| Sbjct: 119957 ttcaaatagcttgccctgttctctggtatttgtgacttgagcatgt 120002
>dbj|AP004053.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1234_B11 Length = 128095 Score = 85.7 bits (43), Expect = 1e-13 Identities = 109/132 (82%) Strand = Plus / Plus Query: 333 tcgcaggagtggatgttctgcatagtgtccgggatcttnatcgccggagtgctcaagtaa 392 |||||||||||||| |||| ||| ||||||||| | || || || ||||||| |||| Sbjct: 37854 tcgcaggagtggatattcttcatttcctccgggatcctcattgctggggtgctcatgtaa 37913 Query: 393 gtgcagtctttgcggactttnttcagggggaactgcgatattggaatgaacactgttcct 452 |||||||| ||||| | ||| || ||||||||||| ||||| ||||| || | ||||||| Sbjct: 37914 gtgcagtccttgcgaagtttcttaagggggaactgtgatatgggaataaaaattgttcct 37973 Query: 453 tttggngccatc 464 ||||| |||||| Sbjct: 37974 tttggcgccatc 37985 Score = 73.8 bits (37), Expect = 6e-10 Identities = 88/105 (83%) Strand = Plus / Plus Query: 213 gaccatgctttctcagagtccatcatgtcgtccccgcactcgtgcacgctccacccttcc 272 ||||||| ||||||| |||||||| || ||||| |||||||||| | |||| |||||| Sbjct: 37644 gaccatgatttctcaatatccatcatctcatccccacactcgtgcatgttccatccttcc 37703 Query: 273 aggacatgaagtattccggcgatatgccacgcgctcatcaccctt 317 || ||||||||||||| || || ||||| || |||||||||||| Sbjct: 37704 agagcatgaagtattccagcaatgtgccaagcactcatcaccctt 37748 Score = 61.9 bits (31), Expect = 2e-06 Identities = 42/46 (91%) Strand = Plus / Plus Query: 528 ttcaagtagcttgctctgttctctggcatntgtgacttgagcatgt 573 ||||| |||||||| ||||||||||| || |||||||||||||||| Sbjct: 38207 ttcaaatagcttgccctgttctctggtatttgtgacttgagcatgt 38252
>gb|AY643843.1|AY643842S2 Hordeum vulgare subsp. vulgare clones BAC 519K7 and 799C8 hardness locus region Length = 129099 Score = 61.9 bits (31), Expect = 2e-06 Identities = 41/43 (95%), Gaps = 1/43 (2%) Strand = Plus / Plus Query: 1 taggttaatggaattgatgtcgatgtt-acactgataaatctt 42 |||||||||||||||||||| |||||| ||||||||||||||| Sbjct: 105616 taggttaatggaattgatgtggatgttcacactgataaatctt 105658
>ref|XM_473150.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1794 Score = 58.0 bits (29), Expect = 3e-05 Identities = 98/122 (80%) Strand = Plus / Minus Query: 306 ctcatcacccttttcggcaaccagttntcgcaggagtggatgttctgcatagtgtccggg 365 |||||||||||| | |||| ||| || || |||| ||||| |||||||| || || ||| Sbjct: 1631 ctcatcacccttcttggcagccaattctcacaggtgtggacattctgcattgtctctggg 1572 Query: 366 atcttnatcgccggagtgctcaagtaagtgcagtctttgcggactttnttcagggggaac 425 ||||| || || || | ||||||||||||||||| ||||| | || || ||||||||| Sbjct: 1571 atcttcattgctgggttactcaagtaagtgcagtccttgcgtgccttcttaagggggaac 1512 Query: 426 tg 427 || Sbjct: 1511 tg 1510
>ref|XM_468372.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2219 Score = 50.1 bits (25), Expect = 0.008 Identities = 36/40 (90%) Strand = Plus / Minus Query: 298 gccacgcgctcatcacccttttcggcaaccagttntcgca 337 ||||||||||||||||||| |||||||||| || ||||| Sbjct: 1838 gccacgcgctcatcaccctcctcggcaaccaattctcgca 1799
>dbj|AK104915.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-047-E01, full insert sequence Length = 659 Score = 50.1 bits (25), Expect = 0.008 Identities = 36/40 (90%) Strand = Plus / Minus Query: 298 gccacgcgctcatcacccttttcggcaaccagttntcgca 337 ||||||||||||||||||| |||||||||| || ||||| Sbjct: 296 gccacgcgctcatcaccctcctcggcaaccaattctcgca 257
>dbj|AK068166.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013134I09, full insert sequence Length = 2219 Score = 50.1 bits (25), Expect = 0.008 Identities = 36/40 (90%) Strand = Plus / Minus Query: 298 gccacgcgctcatcacccttttcggcaaccagttntcgca 337 ||||||||||||||||||| |||||||||| || ||||| Sbjct: 1838 gccacgcgctcatcaccctcctcggcaaccaattctcgca 1799
>dbj|AP005691.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0053L11 Length = 147123 Score = 46.1 bits (23), Expect = 0.13 Identities = 29/31 (93%) Strand = Plus / Plus Query: 298 gccacgcgctcatcacccttttcggcaacca 328 ||||||||||||||||||| |||||||||| Sbjct: 130144 gccacgcgctcatcaccctcctcggcaacca 130174
>dbj|AP004120.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1293_E04 Length = 118192 Score = 46.1 bits (23), Expect = 0.13 Identities = 29/31 (93%) Strand = Plus / Plus Query: 298 gccacgcgctcatcacccttttcggcaacca 328 ||||||||||||||||||| |||||||||| Sbjct: 68046 gccacgcgctcatcaccctcctcggcaacca 68076
>emb|AL606622.3|OSJN00059 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0004N05, complete sequence Length = 158601 Score = 44.1 bits (22), Expect = 0.50 Identities = 65/80 (81%) Strand = Plus / Plus Query: 348 ttctgcatagtgtccgggatcttnatcgccggagtgctcaagtaagtgcagtctttgcgg 407 |||||||| || || |||||||| || || || | ||||||||||||||||| ||||| Sbjct: 59409 ttctgcattgtctctgggatcttcattgctgggttactcaagtaagtgcagtccttgcgt 59468 Query: 408 actttnttcagggggaactg 427 | || || ||||||||||| Sbjct: 59469 gccttcttaagggggaactg 59488
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 44.1 bits (22), Expect = 0.50 Identities = 65/80 (81%) Strand = Plus / Plus Query: 348 ttctgcatagtgtccgggatcttnatcgccggagtgctcaagtaagtgcagtctttgcgg 407 |||||||| || || |||||||| || || || | ||||||||||||||||| ||||| Sbjct: 25573212 ttctgcattgtctctgggatcttcattgctgggttactcaagtaagtgcagtccttgcgt 25573271 Query: 408 actttnttcagggggaactg 427 | || || ||||||||||| Sbjct: 25573272 gccttcttaagggggaactg 25573291
>gb|AY108740.1| Zea mays PCO118291 mRNA sequence Length = 967 Score = 42.1 bits (21), Expect = 2.0 Identities = 35/40 (87%) Strand = Plus / Minus Query: 298 gccacgcgctcatcacccttttcggcaaccagttntcgca 337 ||||||||||||||||||| ||||| |||||| ||||| Sbjct: 669 gccacgcgctcatcaccctccgcggcagccagttctcgca 630
>gb|AC147273.3| Pan troglodytes BAC clone RP43-116B18 from chromosome 7, complete sequence Length = 178716 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 14 ttgatgtcgatgttacactg 33 |||||||||||||||||||| Sbjct: 100834 ttgatgtcgatgttacactg 100853
>gb|AC004029.1|AC004029 Human BAC clone CTB-35E18 from 7q31, complete sequence Length = 153735 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 14 ttgatgtcgatgttacactg 33 |||||||||||||||||||| Sbjct: 118068 ttgatgtcgatgttacactg 118087
>emb|AL954684.9| Mouse DNA sequence from clone RP24-352O9 on chromosome 2, complete sequence Length = 170478 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 25 gttacactgataaatcttaa 44 |||||||||||||||||||| Sbjct: 143539 gttacactgataaatcttaa 143520
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 200 cctgatagcggccgaccatg 219 |||||||||||||||||||| Sbjct: 84934 cctgatagcggccgaccatg 84915 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,419,314 Number of Sequences: 3902068 Number of extensions: 3419314 Number of successful extensions: 52626 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 21 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 52541 Number of HSP's gapped (non-prelim): 79 length of query: 574 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 551 effective length of database: 17,143,297,704 effective search space: 9445957034904 effective search space used: 9445957034904 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
