ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags25k20
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK101597.1| Oryza sativa (japonica cultivar-group) cDNA clon... 113 4e-22
2dbj|AK061403.1| Oryza sativa (japonica cultivar-group) cDNA clon... 113 4e-22
3dbj|AK060653.1| Oryza sativa (japonica cultivar-group) cDNA clon... 113 4e-22
4gb|AY107543.1| Zea mays PCO095765 mRNA sequence 72 1e-09
5gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 62 1e-06
6gb|AC137931.3| Oryza sativa (japonica cultivar-group) chromosome... 62 1e-06
7gb|AC118670.2| Genomic sequence for Oryza sativa, Nipponbare sta... 62 1e-06
8dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 62 1e-06
9emb|AJ430374.1|SLA430374 Silene latifolia partial mRNA from Men-... 52 0.001
10gb|DQ278438.1| Glycine max malonyltransferase (MT2) mRNA, comple... 48 0.018
11gb|AF210698.1|AF210698 Perilla frutescens malonyl-CoA:ACP transa... 42 1.1
12emb|BX469913.15| Zebrafish DNA sequence from clone DKEY-237G5 in... 42 1.1
13dbj|AB084472.1| Triakis scyllium mRNA for beta actin, complete cds 42 1.1
14gb|AC118932.7| Mus musculus chromosome 5, clone RP24-147H20, com... 40 4.4
15gb|AC157928.4| Mus musculus chromosome 5, clone RP24-119I9, comp... 40 4.4
16gb|AC006013.3| Homo sapiens PAC clone RP5-945F2 from 7, complete... 40 4.4
17gb|AC021205.6| Homo sapiens BAC clone RP11-170N16 from 4, comple... 40 4.4
18gb|AC157217.2| Pan troglodytes BAC clone CH251-305B5 from chromo... 40 4.4 
>dbj|AK101597.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033051G22, full
            insert sequence
          Length = 1488

 Score =  113 bits (57), Expect = 4e-22
 Identities = 95/108 (87%)
 Strand = Plus / Minus

                                                                        
Query: 221  ctcatgcaccaatgttctcgatgctggcacctttgttgatncgtttaatgattcctgcta 280
            ||||||||||||||||||| ||||| || |||||||  || | |||||  ||||||||||
Sbjct: 1237 ctcatgcaccaatgttctcaatgcttgcgcctttgtcaatccttttaagaattcctgcta 1178

                                                            
Query: 281  taacctttccaggtccgagttcatagctcttctcaaggcctttaccca 328
            ||||||||||||| || ||||||||||| |||||||| ||||||||||
Sbjct: 1177 taacctttccaggaccaagttcatagcttttctcaagtcctttaccca 1130
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>dbj|AK061403.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-305-H10, full
            insert sequence
          Length = 1430

 Score =  113 bits (57), Expect = 4e-22
 Identities = 95/108 (87%)
 Strand = Plus / Minus

                                                                        
Query: 221  ctcatgcaccaatgttctcgatgctggcacctttgttgatncgtttaatgattcctgcta 280
            ||||||||||||||||||| ||||| || |||||||  || | |||||  ||||||||||
Sbjct: 1217 ctcatgcaccaatgttctcaatgcttgcgcctttgtcaatccttttaagaattcctgcta 1158

                                                            
Query: 281  taacctttccaggtccgagttcatagctcttctcaaggcctttaccca 328
            ||||||||||||| || ||||||||||| |||||||| ||||||||||
Sbjct: 1157 taacctttccaggaccaagttcatagcttttctcaagtcctttaccca 1110
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>dbj|AK060653.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-027-H08, full
            insert sequence
          Length = 1369

 Score =  113 bits (57), Expect = 4e-22
 Identities = 95/108 (87%)
 Strand = Plus / Minus

                                                                        
Query: 221  ctcatgcaccaatgttctcgatgctggcacctttgttgatncgtttaatgattcctgcta 280
            ||||||||||||||||||| ||||| || |||||||  || | |||||  ||||||||||
Sbjct: 1222 ctcatgcaccaatgttctcaatgcttgcgcctttgtcaatccttttaagaattcctgcta 1163

                                                            
Query: 281  taacctttccaggtccgagttcatagctcttctcaaggcctttaccca 328
            ||||||||||||| || ||||||||||| |||||||| ||||||||||
Sbjct: 1162 taacctttccaggaccaagttcatagcttttctcaagtcctttaccca 1115
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>gb|AY107543.1| Zea mays PCO095765 mRNA sequence
          Length = 759

 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 42/44 (95%)
 Strand = Plus / Minus

                                                       
Query: 274 cctgctataacctttccaggtccgagttcatagctcttctcaag 317
           |||||||||||||||||||||||||||||||| || ||||||||
Sbjct: 454 cctgctataacctttccaggtccgagttcataacttttctcaag 411
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 57/66 (86%)
 Strand = Plus / Plus

                                                                            
Query: 221      ctcatgcaccaatgttctcgatgctggcacctttgttgatncgtttaatgattcctgcta 280
                ||||||||||||||||||| ||||| || |||||||  || | |||||  ||||||||||
Sbjct: 10373030 ctcatgcaccaatgttctcaatgcttgcgcctttgtcaatccttttaagaattcctgcta 10373089

                      
Query: 281      taacct 286
                ||||||
Sbjct: 10373090 taacct 10373095



 Score = 60.0 bits (30), Expect = 5e-06
 Identities = 42/46 (91%)
 Strand = Plus / Plus

                                                              
Query: 283      acctttccaggtccgagttcatagctcttctcaaggcctttaccca 328
                ||||||||||| || ||||||||||| |||||||| ||||||||||
Sbjct: 10373214 acctttccaggaccaagttcatagcttttctcaagtcctttaccca 10373259
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>gb|AC137931.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBa0039F10, complete sequence
          Length = 139714

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 57/66 (86%)
 Strand = Plus / Plus

                                                                         
Query: 221   ctcatgcaccaatgttctcgatgctggcacctttgttgatncgtttaatgattcctgcta 280
             ||||||||||||||||||| ||||| || |||||||  || | |||||  ||||||||||
Sbjct: 29583 ctcatgcaccaatgttctcaatgcttgcgcctttgtcaatccttttaagaattcctgcta 29642

                   
Query: 281   taacct 286
             ||||||
Sbjct: 29643 taacct 29648



 Score = 60.0 bits (30), Expect = 5e-06
 Identities = 42/46 (91%)
 Strand = Plus / Plus

                                                           
Query: 283   acctttccaggtccgagttcatagctcttctcaaggcctttaccca 328
             ||||||||||| || ||||||||||| |||||||| ||||||||||
Sbjct: 29767 acctttccaggaccaagttcatagcttttctcaagtcctttaccca 29812
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>gb|AC118670.2| Genomic sequence for Oryza sativa, Nipponbare stain, clone
             OSJNBb0036D03, from chromosome 3, complete sequence
          Length = 125800

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 57/66 (86%)
 Strand = Plus / Plus

                                                                         
Query: 221   ctcatgcaccaatgttctcgatgctggcacctttgttgatncgtttaatgattcctgcta 280
             ||||||||||||||||||| ||||| || |||||||  || | |||||  ||||||||||
Sbjct: 86496 ctcatgcaccaatgttctcaatgcttgcgcctttgtcaatccttttaagaattcctgcta 86555

                   
Query: 281   taacct 286
             ||||||
Sbjct: 86556 taacct 86561



 Score = 60.0 bits (30), Expect = 5e-06
 Identities = 42/46 (91%)
 Strand = Plus / Plus

                                                           
Query: 283   acctttccaggtccgagttcatagctcttctcaaggcctttaccca 328
             ||||||||||| || ||||||||||| |||||||| ||||||||||
Sbjct: 86680 acctttccaggaccaagttcatagcttttctcaagtcctttaccca 86725
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 57/66 (86%)
 Strand = Plus / Plus

                                                                            
Query: 221      ctcatgcaccaatgttctcgatgctggcacctttgttgatncgtttaatgattcctgcta 280
                ||||||||||||||||||| ||||| || |||||||  || | |||||  ||||||||||
Sbjct: 10371131 ctcatgcaccaatgttctcaatgcttgcgcctttgtcaatccttttaagaattcctgcta 10371190

                      
Query: 281      taacct 286
                ||||||
Sbjct: 10371191 taacct 10371196



 Score = 60.0 bits (30), Expect = 5e-06
 Identities = 42/46 (91%)
 Strand = Plus / Plus

                                                              
Query: 283      acctttccaggtccgagttcatagctcttctcaaggcctttaccca 328
                ||||||||||| || ||||||||||| |||||||| ||||||||||
Sbjct: 10371315 acctttccaggaccaagttcatagcttttctcaagtcctttaccca 10371360
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>emb|AJ430374.1|SLA430374 Silene latifolia partial mRNA from Men-524 gene
          Length = 285

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 78/93 (83%), Gaps = 2/93 (2%)
 Strand = Plus / Minus

                                                                       
Query: 222 tcatgcaccaatgttctcgat-gctggcacctttgttgatncgtttaatgattcctgcta 280
           |||||||| |||||||||||| |||| || |||||| ||| |  || ||||| || || |
Sbjct: 198 tcatgcactaatgttctcgattgctg-cagctttgtcgattctcttcatgatccccgcaa 140

                                            
Query: 281 taacctttccaggtccgagttcatagctcttct 313
           | |||||||||||||| | ||||||||||||||
Sbjct: 139 ttacctttccaggtcccaattcatagctcttct 107
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>gb|DQ278438.1| Glycine max malonyltransferase (MT2) mRNA, complete cds
          Length = 1387

 Score = 48.1 bits (24), Expect = 0.018
 Identities = 39/44 (88%)
 Strand = Plus / Minus

                                                        
Query: 270  gattcctgctataacctttccaggtccgagttcatagctcttct 313
            |||||| || ||||||||||| ||||| ||||||||||| ||||
Sbjct: 1081 gattccagcaataacctttccgggtcccagttcatagcttttct 1038
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>gb|AF210698.1|AF210698 Perilla frutescens malonyl-CoA:ACP transacylase (MCT) mRNA, complete
            cds
          Length = 1367

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                     
Query: 271  attcctgctataacctttccaggtccgagttcatagctctt 311
            ||||| ||||| |||||||||||||| | |||||| |||||
Sbjct: 1087 attcccgctatgacctttccaggtcccaattcataactctt 1047
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>emb|BX469913.15| Zebrafish DNA sequence from clone DKEY-237G5 in linkage group 20,
              complete sequence
          Length = 196927

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 140    gtacattcaggacagttgctt 160
              |||||||||||||||||||||
Sbjct: 106974 gtacattcaggacagttgctt 106994
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>dbj|AB084472.1| Triakis scyllium mRNA for beta actin, complete cds
          Length = 1703

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 298 agttcatagctcttctcaagg 318
           |||||||||||||||||||||
Sbjct: 814 agttcatagctcttctcaagg 794
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>gb|AC118932.7| Mus musculus chromosome 5, clone RP24-147H20, complete sequence
          Length = 168156

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 297    gagttcatagctcttctcaa 316
              ||||||||||||||||||||
Sbjct: 103631 gagttcatagctcttctcaa 103612
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>gb|AC157928.4| Mus musculus chromosome 5, clone RP24-119I9, complete sequence
          Length = 157594

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 297  gagttcatagctcttctcaa 316
            ||||||||||||||||||||
Sbjct: 2438 gagttcatagctcttctcaa 2419
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>gb|AC006013.3| Homo sapiens PAC clone RP5-945F2 from 7, complete sequence
          Length = 159002

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 147  caggacagttgcttaaatct 166
            ||||||||||||||||||||
Sbjct: 2357 caggacagttgcttaaatct 2338
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>gb|AC021205.6| Homo sapiens BAC clone RP11-170N16 from 4, complete sequence
          Length = 178917

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 19    cacaatatggagggcaatct 38
             ||||||||||||||||||||
Sbjct: 37793 cacaatatggagggcaatct 37812
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>gb|AC157217.2| Pan troglodytes BAC clone CH251-305B5 from chromosome unknown, complete
              sequence
          Length = 159245

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 19     cacaatatggagggcaatct 38
              ||||||||||||||||||||
Sbjct: 126702 cacaatatggagggcaatct 126683


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,532,245
Number of Sequences: 3902068
Number of extensions: 2532245
Number of successful extensions: 42044
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 42006
Number of HSP's gapped (non-prelim): 37
length of query: 334
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 312
effective length of database: 17,147,199,772
effective search space: 5349926328864
effective search space used: 5349926328864
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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