ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags25k19
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CIPK1_ARATH (Q8RWC9) CBL-interacting serine/threonine-protein ki... 72 2e-12
2CIPK1_ORYSA (Q6X4A2) CIPK-like protein 1 (EC 2.7.11.1) (OsCK1) 47 5e-05
3YCF1_EPIVI (Q00383) Hypothetical 208 kDa protein ycf1 (ORF 1738) 34 0.27
4LEPR_MOUSE (P48356) Leptin receptor precursor (LEP-R) (OB recept... 32 1.4
5CPK15_ARATH (P92937) CBL-interacting serine/threonine-protein ki... 31 2.3
6MRD1_YEAST (Q06106) Multiple RNA-binding domain-containing prote... 30 6.7

>CIPK1_ARATH (Q8RWC9) CBL-interacting serine/threonine-protein kinase 1 (EC|
           2.7.11.1) (SOS2-like protein kinase PKS13) (SNF1-related
           kinase 3.16)
          Length = 444

 Score = 71.6 bits (174), Expect = 2e-12
 Identities = 41/83 (49%), Positives = 52/83 (62%)
 Frame = -1

Query: 587 IESNVINMGFQVQKNNGKLKVIQERKGPTNPRGHGSLLISAEVFEINESLYVVELKRSCG 408
           IE+ V  MGF VQK + KL+V QE +   N +G   L ++AEVFEI  SL VVEL++S G
Sbjct: 361 IETAVTEMGFSVQKKHAKLRVKQEER---NQKGQVGLSVTAEVFEIKPSLNVVELRKSYG 417

Query: 407 DCSLYRQLCATLSDDLGICKSQQ 339
           D  LYRQL   L  D+G    +Q
Sbjct: 418 DSCLYRQLYERLLKDVGTSSPEQ 440



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>CIPK1_ORYSA (Q6X4A2) CIPK-like protein 1 (EC 2.7.11.1) (OsCK1)|
          Length = 449

 Score = 46.6 bits (109), Expect = 5e-05
 Identities = 27/76 (35%), Positives = 44/76 (57%)
 Frame = -1

Query: 587 IESNVINMGFQVQKNNGKLKVIQERKGPTNPRGHGSLLISAEVFEINESLYVVELKRSCG 408
           IE     +GF +QK N K+++   + G       G+L ++ EVF++  SL+VVELK++ G
Sbjct: 361 IEEAAKPLGFDIQKKNYKMRMENLKAGRK-----GNLNVATEVFQVAPSLHVVELKKAKG 415

Query: 407 DCSLYRQLCATLSDDL 360
           D   +++   TLS  L
Sbjct: 416 DTLEFQKFYRTLSTQL 431



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>YCF1_EPIVI (Q00383) Hypothetical 208 kDa protein ycf1 (ORF 1738)|
          Length = 1738

 Score = 34.3 bits (77), Expect = 0.27
 Identities = 18/49 (36%), Positives = 30/49 (61%)
 Frame = -1

Query: 587  IESNVINMGFQVQKNNGKLKVIQERKGPTNPRGHGSLLISAEVFEINES 441
            I++ ++ + F + KN+ K   I E+KGPT     GS+LI ++  +I ES
Sbjct: 1440 IKNKLLFINFTINKNSSK--TINEKKGPTGREDLGSVLILSQKKDIEES 1486



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>LEPR_MOUSE (P48356) Leptin receptor precursor (LEP-R) (OB receptor) (OB-R)|
           (B219) (CD295 antigen)
          Length = 1162

 Score = 32.0 bits (71), Expect = 1.4
 Identities = 23/88 (26%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
 Frame = +1

Query: 307 SSCLMESFFRSCWLLHIPKSSESVAHSCLYREQSPH-DLFSSTT*RDSLISNTSAEINND 483
           S  ++E+ F S  + ++P+ S++V H C   EQ  +    +  T   +L S   A +   
Sbjct: 64  SEAIVEAKFNSSGI-YVPELSKTVFHCCFGNEQGQNCSALTDNTEGKTLASVVKASVFRQ 122

Query: 484 PCPLGFVGPLRSWITFSLPLFFCTWKPI 567
              LG    +  W+   L LF C  +P+
Sbjct: 123 ---LGVNWDIECWMKGDLTLFICHMEPL 147



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>CPK15_ARATH (P92937) CBL-interacting serine/threonine-protein kinase 15 (EC|
           2.7.11.1) (Serine/threonine-protein kinase ATPK10)
           (SOS2-like protein kinase PKS3) (SOS-interacting protein
           2) (SNF1-related kinase 3.1)
          Length = 421

 Score = 31.2 bits (69), Expect = 2.3
 Identities = 14/31 (45%), Positives = 23/31 (74%)
 Frame = -1

Query: 476 LISAEVFEINESLYVVELKRSCGDCSLYRQL 384
           ++ AEVFEI  S ++V LK+S GD + Y+++
Sbjct: 374 VVEAEVFEIAPSYHMVVLKKSGGDTAEYKRV 404



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>MRD1_YEAST (Q06106) Multiple RNA-binding domain-containing protein 1|
          Length = 887

 Score = 29.6 bits (65), Expect = 6.7
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +1

Query: 391 LYREQSPHDLFSSTT*RDSLISNTSAEINNDP 486
           +Y E+ P D F+     D LI+NTSA+   +P
Sbjct: 597 IYLERGPKDCFTKPAEADDLINNTSAKEEENP 628


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 87,698,413
Number of Sequences: 219361
Number of extensions: 1831324
Number of successful extensions: 4694
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4572
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4692
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 5101629520
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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