ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags25k16
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|AL732618.6| Human DNA sequence from clone RP11-25L19 on chro... 46 0.044
2emb|CR769784.10| Zebrafish DNA sequence from clone DKEY-3N10 in ... 42 0.68
3emb|AL138849.12| Human DNA sequence from clone RP5-965L7 on chro... 42 0.68
4emb|CR812957.13| Zebrafish DNA sequence from clone DKEY-41L5 in ... 42 0.68
5emb|BX936312.12| Zebrafish DNA sequence from clone DKEY-204O5 in... 40 2.7
6emb|AL132673.17|HSJ474G15 Human DNA sequence from clone RP3-474G... 40 2.7
7emb|AL591177.14| Mouse DNA sequence from clone RP23-399H5 on chr... 40 2.7
8emb|AL935276.16| Zebrafish DNA sequence from clone CH211-273J2, ... 40 2.7
9gb|AC163630.5| Mus musculus BAC clone RP23-139M2 from chromosome... 40 2.7
10gb|AC173707.2| Mus musculus BAC clone RP23-296A12 from chromosom... 40 2.7
11gb|AC002324.1|AC002324 Mus musculus chromosome 11, clone 475_H_1... 40 2.7
12emb|AL844149.4| Mouse DNA sequence from clone RP23-194D5 on chro... 40 2.7

>emb|AL732618.6| Human DNA sequence from clone RP11-25L19 on chromosome 1, complete
            sequence
          Length = 95333

 Score = 46.1 bits (23), Expect = 0.044
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                   
Query: 61   gccggtatacaagtaagatcagc 83
            |||||||||||||||||||||||
Sbjct: 4298 gccggtatacaagtaagatcagc 4320



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>emb|CR769784.10| Zebrafish DNA sequence from clone DKEY-3N10 in linkage group 1,
             complete sequence
          Length = 230420

 Score = 42.1 bits (21), Expect = 0.68
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 39    ctaatatgtatatataagaat 59
             |||||||||||||||||||||
Sbjct: 91656 ctaatatgtatatataagaat 91676



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>emb|AL138849.12| Human DNA sequence from clone RP5-965L7 on chromosome 1p32.1-33
            Contains the 3' ends of genes FLJ34719 and KIAA0191,
            complete sequence
          Length = 127006

 Score = 42.1 bits (21), Expect = 0.68
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 40   taatatgtatatataagaata 60
            |||||||||||||||||||||
Sbjct: 6250 taatatgtatatataagaata 6270



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>emb|CR812957.13| Zebrafish DNA sequence from clone DKEY-41L5 in linkage group 1, complete
              sequence
          Length = 220462

 Score = 42.1 bits (21), Expect = 0.68
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 39     ctaatatgtatatataagaat 59
              |||||||||||||||||||||
Sbjct: 204527 ctaatatgtatatataagaat 204507



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>emb|BX936312.12| Zebrafish DNA sequence from clone DKEY-204O5 in linkage group 7,
             complete sequence
          Length = 158510

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 140   tagctagtgtcagcatcagc 159
             ||||||||||||||||||||
Sbjct: 64519 tagctagtgtcagcatcagc 64538



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>emb|AL132673.17|HSJ474G15 Human DNA sequence from clone RP3-474G15 on chromosome 6q12-14.1
             Contains a novel pseudogene and part of a novel gene,
             complete sequence
          Length = 63385

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 39    ctaatatgtatatataagaa 58
             ||||||||||||||||||||
Sbjct: 59828 ctaatatgtatatataagaa 59847



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>emb|AL591177.14| Mouse DNA sequence from clone RP23-399H5 on chromosome 11, complete
             sequence
          Length = 193004

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 71    aagtaagatcagcaaagctg 90
             ||||||||||||||||||||
Sbjct: 84708 aagtaagatcagcaaagctg 84727



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>emb|AL935276.16| Zebrafish DNA sequence from clone CH211-273J2, complete sequence
          Length = 164481

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 140  tagctagtgtcagcatcagc 159
            ||||||||||||||||||||
Sbjct: 6669 tagctagtgtcagcatcagc 6688



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>gb|AC163630.5| Mus musculus BAC clone RP23-139M2 from chromosome 16, complete sequence
          Length = 231703

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 35     acatctaatatgtatatata 54
              ||||||||||||||||||||
Sbjct: 174232 acatctaatatgtatatata 174213



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>gb|AC173707.2| Mus musculus BAC clone RP23-296A12 from chromosome 16, complete sequence
          Length = 171458

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 35     acatctaatatgtatatata 54
              ||||||||||||||||||||
Sbjct: 115714 acatctaatatgtatatata 115733



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>gb|AC002324.1|AC002324 Mus musculus chromosome 11, clone 475_H_14, complete sequence
          Length = 171952

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 71  aagtaagatcagcaaagctg 90
           ||||||||||||||||||||
Sbjct: 282 aagtaagatcagcaaagctg 263



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>emb|AL844149.4| Mouse DNA sequence from clone RP23-194D5 on chromosome 4, complete
              sequence
          Length = 199774

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 32     aaaacatctaatatgtatatataa 55
              |||||||||||||| |||||||||
Sbjct: 109535 aaaacatctaatatatatatataa 109558


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,233,871
Number of Sequences: 3902068
Number of extensions: 2233871
Number of successful extensions: 282982
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 282935
Number of HSP's gapped (non-prelim): 47
length of query: 212
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 190
effective length of database: 17,147,199,772
effective search space: 3257967956680
effective search space used: 3257967956680
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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