ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbags25k12 |
|---|---|
| Clone Library Name | barley_pub |
>DCHS_DROME (Q05733) Histidine decarboxylase (EC 4.1.1.22) (HDC)| Length = 847 Score = 32.7 bits (73), Expect = 0.41 Identities = 24/77 (31%), Positives = 34/77 (44%) Frame = -3 Query: 286 P*TRTPKMVNWRLLEWSSLLTKGHSHCLASSSAQPSIALPSLMKLATPSPAGATVASELV 107 P +P+ +W +S LL + +S S S SL ATP+P + ELV Sbjct: 743 PTRESPEDPDWPAKTFSQLLLERYSSQSQSLGNNSSTESSSLSGGATPTPTPMSSLDELV 802 Query: 106 TWYLLCIVAVTLPFFSA 56 T LL + + P SA Sbjct: 803 TPLLLSFASPSQPMLSA 819
>PURL_PROAC (Q6A6C0) Phosphoribosylformylglycinamidine synthase II (EC 6.3.5.3)| (FGAM synthase II) Length = 750 Score = 31.6 bits (70), Expect = 0.91 Identities = 22/83 (26%), Positives = 36/83 (43%), Gaps = 2/83 (2%) Frame = +3 Query: 147 VANFIKLGSAIDGWAELDARQCEWPLVSKL--DHSNNLQFTIFGVLVYGHPCSQPSSGTF 320 V N + WAEL E+ + ++ + ++ V+ H CS SS + Sbjct: 5 VENAVSTPDVEQPWAELGLSADEYQRIREILGRRPTGGELAMYSVMWSEH-CSYKSSKKY 63 Query: 321 QRNV*DVPPELPLCPVQHGLGRN 389 R D+P + PL P+ G+G N Sbjct: 64 LRRFGDLPQQTPLGPLLAGIGDN 86
>CBID_SULSO (Q97WC6) Putative cobalt-precorrin-6A synthase [deacetylating] (EC| 2.1.1.-) Length = 349 Score = 29.3 bits (64), Expect = 4.5 Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 2/78 (2%) Frame = -2 Query: 377 AVLNRAERELRWHISDIPLKGPAGRLRARMPVDQDSKDGELEVVGMVKFAYQGPFTLSG- 201 AV+ +E R S + + P G LR +PV++ D E+ + KF+ P L G Sbjct: 24 AVIGLLNKEKR---STVVIPTPIG-LRLEIPVEKVEIDSEISCAEVKKFSGDNPDILDGL 79 Query: 200 -IKLCPAINSTAQFNEVG 150 I+ C +N + +G Sbjct: 80 VIRCCAKLNENNEIVIIG 97
>TOP2A_RAT (P41516) DNA topoisomerase 2-alpha (EC 5.99.1.3) (DNA topoisomerase| II, alpha isozyme) Length = 1526 Score = 29.3 bits (64), Expect = 4.5 Identities = 14/38 (36%), Positives = 18/38 (47%) Frame = -2 Query: 365 RAERELRWHISDIPLKGPAGRLRARMPVDQDSKDGELE 252 +++ L H+S P A R RMP DS D E E Sbjct: 1438 KSDSALNAHVSKKPAPAKAKNSRKRMPSSSDSSDSEFE 1475
>GP123_HUMAN (Q86SQ6) Probable G-protein coupled receptor 123| Length = 1280 Score = 29.3 bits (64), Expect = 4.5 Identities = 19/62 (30%), Positives = 27/62 (43%) Frame = -3 Query: 313 PLDG*EHGCP*TRTPKMVNWRLLEWSSLLTKGHSHCLASSSAQPSIALPSLMKLATPSPA 134 PL G H ++ K+V WR + +S L+ G L+ S Q P + P P Sbjct: 560 PLRGGGHPYGDSQAGKVVEWRAGDRASGLSAGERRFLSQSELQTWPRTPHCVGKKVPQPV 619 Query: 133 GA 128 GA Sbjct: 620 GA 621
>LY96_BOVIN (P58754) Lymphocyte antigen 96 precursor (MD-2 protein)| Length = 160 Score = 28.9 bits (63), Expect = 5.9 Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 3/51 (5%) Frame = -2 Query: 227 YQGPFTLSGIKLCPAINSTAQFNEVGHTFSSGSYRCI---*VGNLVPSLYC 84 Y G ++ G +N+T F+ G FS G Y C+ GN L+C Sbjct: 98 YGGDYSFCGALKGETVNTTIPFSFQGIRFSPGQYHCVVEAISGNSEEMLFC 148
>PENK_RAT (P04094) Proenkephalin A precursor [Contains: Synenkephalin;| Met-enkephalin (Opioid growth factor) (OGF); Met-enkephalin-Arg-Gly-Leu; Leu-enkephalin; Met-enkephalin-Arg-Phe] Length = 269 Score = 28.5 bits (62), Expect = 7.7 Identities = 10/26 (38%), Positives = 18/26 (69%) Frame = +2 Query: 266 LWSPGLRASVLSTVQRDLSEECLRCA 343 +W L + +L+TVQ D S++C +C+ Sbjct: 9 IWLLALGSCLLATVQADCSQDCAKCS 34
>RPOB_PSEU2 (Q4ZMN7) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1357 Score = 28.5 bits (62), Expect = 7.7 Identities = 13/23 (56%), Positives = 17/23 (73%) Frame = -2 Query: 428 FIVKLPVDPTLLNVSPKAVLNRA 360 F VK P D TL++VSPK V++ A Sbjct: 647 FTVKAPADVTLMDVSPKQVVSVA 669
>RPOB_PSESM (Q889X8) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1357 Score = 28.5 bits (62), Expect = 7.7 Identities = 13/23 (56%), Positives = 17/23 (73%) Frame = -2 Query: 428 FIVKLPVDPTLLNVSPKAVLNRA 360 F VK P D TL++VSPK V++ A Sbjct: 647 FTVKAPADVTLMDVSPKQVVSVA 669
>RPOB_PSE14 (Q48D29) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1357 Score = 28.5 bits (62), Expect = 7.7 Identities = 13/23 (56%), Positives = 17/23 (73%) Frame = -2 Query: 428 FIVKLPVDPTLLNVSPKAVLNRA 360 F VK P D TL++VSPK V++ A Sbjct: 647 FTVKAPADVTLMDVSPKQVVSVA 669
>FLGG_CAUCR (Q06172) Flagellar basal-body rod protein flgG (Distal rod protein)| Length = 262 Score = 28.5 bits (62), Expect = 7.7 Identities = 16/50 (32%), Positives = 25/50 (50%) Frame = +3 Query: 24 NMNFTPCCLKQAEKKGKVTATIQRRYQVTNSDATVAPAGEGVANFIKLGS 173 NMN ++AE + + TI+R ++SD + P G V +K GS Sbjct: 27 NMNTVGFKRQRAEFQDLLYQTIERAGSQSSSDGNIVPTGVQVGGGVKAGS 76
>FMT_STRR6 (Q8DNR7) Methionyl-tRNA formyltransferase (EC 2.1.2.9)| Length = 311 Score = 28.5 bits (62), Expect = 7.7 Identities = 24/110 (21%), Positives = 48/110 (43%), Gaps = 7/110 (6%) Frame = -2 Query: 440 SNVTFIVKLPVDPTLLNVSP--KAVLNRAERELRWHISDIPLKGPAGRLRARMPVDQDSK 267 S VTF + + LN + + + N+ W ++ LKG ++ +PV+ Sbjct: 197 SQVTFSPNIKSEEEKLNWNKTNRQLFNQIRGMNPWPVAHTFLKGDRFKIYEALPVEGQGN 256 Query: 266 DGELEVVG---MVKFAYQGPFTLSGIKLC--PAINSTAQFNEVGHTFSSG 132 GE+ +G ++ +G +L ++ P ++ + N VG T + G Sbjct: 257 PGEILSIGKKELIVATAEGALSLKQVQPAGKPKMDIASFLNGVGRTLTVG 306
>FMT_STRPN (Q97PA6) Methionyl-tRNA formyltransferase (EC 2.1.2.9)| Length = 311 Score = 28.5 bits (62), Expect = 7.7 Identities = 24/110 (21%), Positives = 48/110 (43%), Gaps = 7/110 (6%) Frame = -2 Query: 440 SNVTFIVKLPVDPTLL--NVSPKAVLNRAERELRWHISDIPLKGPAGRLRARMPVDQDSK 267 S VTF + + L N + + + N+ W ++ LKG ++ +PV+ Sbjct: 197 SQVTFSPNIKPEEEKLDWNKTNRQLFNQIRGMNPWPVAHTFLKGDRFKIYEALPVEGQGN 256 Query: 266 DGELEVVG---MVKFAYQGPFTLSGIKLC--PAINSTAQFNEVGHTFSSG 132 GE+ +G ++ +G +L ++ P ++ + N VG T + G Sbjct: 257 PGEILSIGKKELIVATAEGALSLKQVQPAGKPKMDIASFLNGVGRTLTVG 306
>CCAR1_MOUSE (Q8CH18) Cell division cycle and apoptosis regulator protein 1| (Cell cycle and apoptosis regulatory protein 1) (CARP-1) Length = 1146 Score = 28.5 bits (62), Expect = 7.7 Identities = 11/24 (45%), Positives = 16/24 (66%) Frame = -3 Query: 187 QPSIALPSLMKLATPSPAGATVAS 116 QP++ALP+ + L+TP PA S Sbjct: 105 QPAVALPTSLSLSTPQPAAQITVS 128 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 64,770,799 Number of Sequences: 219361 Number of extensions: 1324667 Number of successful extensions: 3762 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 3663 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3762 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2628831825 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
