ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbags25k12 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_480940.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2141 Score = 349 bits (176), Expect = 5e-93 Identities = 278/312 (89%) Strand = Plus / Minus Query: 130 ctcccgctggagaaggtgtggccaacttcattaaactgggcagtgctattgatggctggg 189 ||||| |||||||||||||||||| | ||||||||||| || |||| || |||||||| Sbjct: 1980 ctcccactggagaaggtgtggccagcctcattaaactgagccgtgccatcagtggctggg 1921 Query: 190 cagagcttgatgccagacaatgtgaatggcccttggtaagcaaacttgaccattccaaca 249 || || ||||||||||||||||| ||||||||||||||||||||||| ||||| |||||| Sbjct: 1920 catagtttgatgccagacaatgtaaatggcccttggtaagcaaacttcaccatcccaaca 1861 Query: 250 acctccagttcaccatctttggagtcctggtctacgggcatccgtgctctcaaccgtcca 309 ||||| || |||||||| || |||||||| ||||| |||||||| || ||||| |||||| Sbjct: 1860 acctctagctcaccatcctttgagtcctgatctacaggcatccgagccctcaaacgtcca 1801 Query: 310 gcgggacctttcagaggaatgtctgagatgtgccacctgagctccctctctgcccggttc 369 || || |||||||| |||||||||| |||||||||||||||||||||||||||||| ||| Sbjct: 1800 gcaggtcctttcaggggaatgtctgggatgtgccacctgagctccctctctgcccgattc 1741 Query: 370 aacacggccttgggagaaacattaagcagagttggatccacaggaagcttaacaatgaat 429 | ||| |||||||| |||||||| ||||||||||| ||||||||||||||||||||||| Sbjct: 1740 agcacagccttgggtgaaacatttagcagagttgggtccacaggaagcttaacaatgaac 1681 Query: 430 gtaacattgctc 441 |||||||||||| Sbjct: 1680 gtaacattgctc 1669 Score = 65.9 bits (33), Expect = 1e-07 Identities = 36/37 (97%) Strand = Plus / Minus Query: 68 gggtaaagtaacagctacaatacaaagaaggtaccaa 104 ||||||||||||| ||||||||||||||||||||||| Sbjct: 2033 gggtaaagtaacaactacaatacaaagaaggtaccaa 1997
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 349 bits (176), Expect = 5e-93 Identities = 278/312 (89%) Strand = Plus / Plus Query: 130 ctcccgctggagaaggtgtggccaacttcattaaactgggcagtgctattgatggctggg 189 ||||| |||||||||||||||||| | ||||||||||| || |||| || |||||||| Sbjct: 8789507 ctcccactggagaaggtgtggccagcctcattaaactgagccgtgccatcagtggctggg 8789566 Query: 190 cagagcttgatgccagacaatgtgaatggcccttggtaagcaaacttgaccattccaaca 249 || || ||||||||||||||||| ||||||||||||||||||||||| ||||| |||||| Sbjct: 8789567 catagtttgatgccagacaatgtaaatggcccttggtaagcaaacttcaccatcccaaca 8789626 Query: 250 acctccagttcaccatctttggagtcctggtctacgggcatccgtgctctcaaccgtcca 309 ||||| || |||||||| || |||||||| ||||| |||||||| || ||||| |||||| Sbjct: 8789627 acctctagctcaccatcctttgagtcctgatctacaggcatccgagccctcaaacgtcca 8789686 Query: 310 gcgggacctttcagaggaatgtctgagatgtgccacctgagctccctctctgcccggttc 369 || || |||||||| |||||||||| |||||||||||||||||||||||||||||| ||| Sbjct: 8789687 gcaggtcctttcaggggaatgtctgggatgtgccacctgagctccctctctgcccgattc 8789746 Query: 370 aacacggccttgggagaaacattaagcagagttggatccacaggaagcttaacaatgaat 429 | ||| |||||||| |||||||| ||||||||||| ||||||||||||||||||||||| Sbjct: 8789747 agcacagccttgggtgaaacatttagcagagttgggtccacaggaagcttaacaatgaac 8789806 Query: 430 gtaacattgctc 441 |||||||||||| Sbjct: 8789807 gtaacattgctc 8789818 Score = 65.9 bits (33), Expect = 1e-07 Identities = 36/37 (97%) Strand = Plus / Plus Query: 68 gggtaaagtaacagctacaatacaaagaaggtaccaa 104 ||||||||||||| ||||||||||||||||||||||| Sbjct: 8789454 gggtaaagtaacaactacaatacaaagaaggtaccaa 8789490
>dbj|AP004690.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0437G01 Length = 147101 Score = 349 bits (176), Expect = 5e-93 Identities = 278/312 (89%) Strand = Plus / Plus Query: 130 ctcccgctggagaaggtgtggccaacttcattaaactgggcagtgctattgatggctggg 189 ||||| |||||||||||||||||| | ||||||||||| || |||| || |||||||| Sbjct: 67256 ctcccactggagaaggtgtggccagcctcattaaactgagccgtgccatcagtggctggg 67315 Query: 190 cagagcttgatgccagacaatgtgaatggcccttggtaagcaaacttgaccattccaaca 249 || || ||||||||||||||||| ||||||||||||||||||||||| ||||| |||||| Sbjct: 67316 catagtttgatgccagacaatgtaaatggcccttggtaagcaaacttcaccatcccaaca 67375 Query: 250 acctccagttcaccatctttggagtcctggtctacgggcatccgtgctctcaaccgtcca 309 ||||| || |||||||| || |||||||| ||||| |||||||| || ||||| |||||| Sbjct: 67376 acctctagctcaccatcctttgagtcctgatctacaggcatccgagccctcaaacgtcca 67435 Query: 310 gcgggacctttcagaggaatgtctgagatgtgccacctgagctccctctctgcccggttc 369 || || |||||||| |||||||||| |||||||||||||||||||||||||||||| ||| Sbjct: 67436 gcaggtcctttcaggggaatgtctgggatgtgccacctgagctccctctctgcccgattc 67495 Query: 370 aacacggccttgggagaaacattaagcagagttggatccacaggaagcttaacaatgaat 429 | ||| |||||||| |||||||| ||||||||||| ||||||||||||||||||||||| Sbjct: 67496 agcacagccttgggtgaaacatttagcagagttgggtccacaggaagcttaacaatgaac 67555 Query: 430 gtaacattgctc 441 |||||||||||| Sbjct: 67556 gtaacattgctc 67567 Score = 65.9 bits (33), Expect = 1e-07 Identities = 36/37 (97%) Strand = Plus / Plus Query: 68 gggtaaagtaacagctacaatacaaagaaggtaccaa 104 ||||||||||||| ||||||||||||||||||||||| Sbjct: 67203 gggtaaagtaacaactacaatacaaagaaggtaccaa 67239
>dbj|AP005478.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBb0070J06 Length = 142303 Score = 349 bits (176), Expect = 5e-93 Identities = 278/312 (89%) Strand = Plus / Plus Query: 130 ctcccgctggagaaggtgtggccaacttcattaaactgggcagtgctattgatggctggg 189 ||||| |||||||||||||||||| | ||||||||||| || |||| || |||||||| Sbjct: 132486 ctcccactggagaaggtgtggccagcctcattaaactgagccgtgccatcagtggctggg 132545 Query: 190 cagagcttgatgccagacaatgtgaatggcccttggtaagcaaacttgaccattccaaca 249 || || ||||||||||||||||| ||||||||||||||||||||||| ||||| |||||| Sbjct: 132546 catagtttgatgccagacaatgtaaatggcccttggtaagcaaacttcaccatcccaaca 132605 Query: 250 acctccagttcaccatctttggagtcctggtctacgggcatccgtgctctcaaccgtcca 309 ||||| || |||||||| || |||||||| ||||| |||||||| || ||||| |||||| Sbjct: 132606 acctctagctcaccatcctttgagtcctgatctacaggcatccgagccctcaaacgtcca 132665 Query: 310 gcgggacctttcagaggaatgtctgagatgtgccacctgagctccctctctgcccggttc 369 || || |||||||| |||||||||| |||||||||||||||||||||||||||||| ||| Sbjct: 132666 gcaggtcctttcaggggaatgtctgggatgtgccacctgagctccctctctgcccgattc 132725 Query: 370 aacacggccttgggagaaacattaagcagagttggatccacaggaagcttaacaatgaat 429 | ||| |||||||| |||||||| ||||||||||| ||||||||||||||||||||||| Sbjct: 132726 agcacagccttgggtgaaacatttagcagagttgggtccacaggaagcttaacaatgaac 132785 Query: 430 gtaacattgctc 441 |||||||||||| Sbjct: 132786 gtaacattgctc 132797 Score = 65.9 bits (33), Expect = 1e-07 Identities = 36/37 (97%) Strand = Plus / Plus Query: 68 gggtaaagtaacagctacaatacaaagaaggtaccaa 104 ||||||||||||| ||||||||||||||||||||||| Sbjct: 132433 gggtaaagtaacaactacaatacaaagaaggtaccaa 132469
>dbj|AK121452.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023142L20, full insert sequence Length = 2149 Score = 349 bits (176), Expect = 5e-93 Identities = 278/312 (89%) Strand = Plus / Minus Query: 130 ctcccgctggagaaggtgtggccaacttcattaaactgggcagtgctattgatggctggg 189 ||||| |||||||||||||||||| | ||||||||||| || |||| || |||||||| Sbjct: 1982 ctcccactggagaaggtgtggccagcctcattaaactgagccgtgccatcagtggctggg 1923 Query: 190 cagagcttgatgccagacaatgtgaatggcccttggtaagcaaacttgaccattccaaca 249 || || ||||||||||||||||| ||||||||||||||||||||||| ||||| |||||| Sbjct: 1922 catagtttgatgccagacaatgtaaatggcccttggtaagcaaacttcaccatcccaaca 1863 Query: 250 acctccagttcaccatctttggagtcctggtctacgggcatccgtgctctcaaccgtcca 309 ||||| || |||||||| || |||||||| ||||| |||||||| || ||||| |||||| Sbjct: 1862 acctctagctcaccatcctttgagtcctgatctacaggcatccgagccctcaaacgtcca 1803 Query: 310 gcgggacctttcagaggaatgtctgagatgtgccacctgagctccctctctgcccggttc 369 || || |||||||| |||||||||| |||||||||||||||||||||||||||||| ||| Sbjct: 1802 gcaggtcctttcaggggaatgtctgggatgtgccacctgagctccctctctgcccgattc 1743 Query: 370 aacacggccttgggagaaacattaagcagagttggatccacaggaagcttaacaatgaat 429 | ||| |||||||| |||||||| ||||||||||| ||||||||||||||||||||||| Sbjct: 1742 agcacagccttgggtgaaacatttagcagagttgggtccacaggaagcttaacaatgaac 1683 Query: 430 gtaacattgctc 441 |||||||||||| Sbjct: 1682 gtaacattgctc 1671 Score = 65.9 bits (33), Expect = 1e-07 Identities = 36/37 (97%) Strand = Plus / Minus Query: 68 gggtaaagtaacagctacaatacaaagaaggtaccaa 104 ||||||||||||| ||||||||||||||||||||||| Sbjct: 2035 gggtaaagtaacaactacaatacaaagaaggtaccaa 1999
>dbj|AK102707.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033104B11, full insert sequence Length = 2141 Score = 349 bits (176), Expect = 5e-93 Identities = 278/312 (89%) Strand = Plus / Minus Query: 130 ctcccgctggagaaggtgtggccaacttcattaaactgggcagtgctattgatggctggg 189 ||||| |||||||||||||||||| | ||||||||||| || |||| || |||||||| Sbjct: 1980 ctcccactggagaaggtgtggccagcctcattaaactgagccgtgccatcagtggctggg 1921 Query: 190 cagagcttgatgccagacaatgtgaatggcccttggtaagcaaacttgaccattccaaca 249 || || ||||||||||||||||| ||||||||||||||||||||||| ||||| |||||| Sbjct: 1920 catagtttgatgccagacaatgtaaatggcccttggtaagcaaacttcaccatcccaaca 1861 Query: 250 acctccagttcaccatctttggagtcctggtctacgggcatccgtgctctcaaccgtcca 309 ||||| || |||||||| || |||||||| ||||| |||||||| || ||||| |||||| Sbjct: 1860 acctctagctcaccatcctttgagtcctgatctacaggcatccgagccctcaaacgtcca 1801 Query: 310 gcgggacctttcagaggaatgtctgagatgtgccacctgagctccctctctgcccggttc 369 || || |||||||| |||||||||| |||||||||||||||||||||||||||||| ||| Sbjct: 1800 gcaggtcctttcaggggaatgtctgggatgtgccacctgagctccctctctgcccgattc 1741 Query: 370 aacacggccttgggagaaacattaagcagagttggatccacaggaagcttaacaatgaat 429 | ||| |||||||| |||||||| ||||||||||| ||||||||||||||||||||||| Sbjct: 1740 agcacagccttgggtgaaacatttagcagagttgggtccacaggaagcttaacaatgaac 1681 Query: 430 gtaacattgctc 441 |||||||||||| Sbjct: 1680 gtaacattgctc 1669 Score = 65.9 bits (33), Expect = 1e-07 Identities = 36/37 (97%) Strand = Plus / Minus Query: 68 gggtaaagtaacagctacaatacaaagaaggtaccaa 104 ||||||||||||| ||||||||||||||||||||||| Sbjct: 2033 gggtaaagtaacaactacaatacaaagaaggtaccaa 1997
>gb|AY105218.1| Zea mays PCO148558 mRNA sequence Length = 743 Score = 287 bits (145), Expect = 2e-74 Identities = 274/317 (86%) Strand = Plus / Minus Query: 125 ggtagctcccgctggagaaggtgtggccaacttcattaaactgggcagtgctattgatgg 184 |||| ||||| ||||||||||| ||||||||||||||||| |||||| ||| || ||| Sbjct: 587 ggtaactcccactggagaaggtatggccaacttcattaaattgggcaatgccatcagtgg 528 Query: 185 ctgggcagagcttgatgccagacaatgtgaatggcccttggtaagcaaacttgaccattc 244 ||||||| || || |||||||||||||||||||| ||||||||||||||||| ||||| | Sbjct: 527 ctgggcatagtttaatgccagacaatgtgaatggaccttggtaagcaaacttcaccatcc 468 Query: 245 caacaacctccagttcaccatctttggagtcctggtctacgggcatccgtgctctcaacc 304 |||||||||| || ||||||||||||||||| ||||| || |||||||| || || | || Sbjct: 467 caacaacctctagctcaccatctttggagtcttggtcaacaggcatccgcgccctgagcc 408 Query: 305 gtccagcgggacctttcagaggaatgtctgagatgtgccacctgagctccctctctgccc 364 || || ||||||||||| ||||||||||| || ||||| || | ||| ||||||||| Sbjct: 407 tgccggctggacctttcaggggaatgtctgaaatatgccatctaaactctttctctgccc 348 Query: 365 ggttcaacacggccttgggagaaacattaagcagagttggatccacaggaagcttaacaa 424 |||| | ||| |||||||| |||||||| |||||||| |||||||||||||||||||||| Sbjct: 347 ggtttagcacagccttgggtgaaacattgagcagagtaggatccacaggaagcttaacaa 288 Query: 425 tgaatgtaacattgctc 441 |||||||||||||||| Sbjct: 287 cgaatgtaacattgctc 271
>ref|XM_695823.1| PREDICTED: Danio rerio similar to fibrillin 2 precursor (LOC572140), partial mRNA Length = 676 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Minus Query: 115 cagatgcaacggtagctcccgc 136 |||||||||||||||||||||| Sbjct: 632 cagatgcaacggtagctcccgc 611
>gb|AC115124.6| Mus musculus BAC clone RP24-349M22 from chromosome 18, complete sequence Length = 137371 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 327 aatgtctgagatgtgccacct 347 ||||||||||||||||||||| Sbjct: 117238 aatgtctgagatgtgccacct 117258
>gb|AC127368.3| Mus musculus BAC clone RP23-22J14 from chromosome 18, complete sequence Length = 206102 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 327 aatgtctgagatgtgccacct 347 ||||||||||||||||||||| Sbjct: 166980 aatgtctgagatgtgccacct 166960
>emb|AL606902.26| Mouse DNA sequence from clone RP23-167A12 on chromosome 4, complete sequence Length = 100421 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 332 ctgagatgtgccacctgagct 352 ||||||||||||||||||||| Sbjct: 55933 ctgagatgtgccacctgagct 55913
>emb|BX295539.1|NCB1D14 Neurospora crassa genomic DNA, BAC contig B1D14 Length = 138898 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 129 gctcccgctggagaaggtgt 148 |||||||||||||||||||| Sbjct: 44415 gctcccgctggagaaggtgt 44434
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 74 agtaacagctacaatacaaa 93 |||||||||||||||||||| Sbjct: 34480548 agtaacagctacaatacaaa 34480567
>gb|AC097377.3| Homo sapiens BAC clone RP11-83F13 from 2, complete sequence Length = 158923 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 13 gaatacgtacaaatatgaat 32 |||||||||||||||||||| Sbjct: 133118 gaatacgtacaaatatgaat 133137
>dbj|AP003260.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0468B07 Length = 169071 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 74 agtaacagctacaatacaaa 93 |||||||||||||||||||| Sbjct: 162892 agtaacagctacaatacaaa 162911
>dbj|AP003247.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0425G02 Length = 155432 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 74 agtaacagctacaatacaaa 93 |||||||||||||||||||| Sbjct: 56267 agtaacagctacaatacaaa 56286
>dbj|AB084378.1| Euphausia superba mitochondrial DNA, trnM to rrnS gene region Length = 14606 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 411 aggaagcttaacaatgaatg 430 |||||||||||||||||||| Sbjct: 8783 aggaagcttaacaatgaatg 8802 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,615,852 Number of Sequences: 3902068 Number of extensions: 3615852 Number of successful extensions: 81541 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 17 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 81479 Number of HSP's gapped (non-prelim): 61 length of query: 441 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 419 effective length of database: 17,147,199,772 effective search space: 7184676704468 effective search space used: 7184676704468 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
