ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags25k05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1TODA_PSEPU (P13452) Toluene 1,2-dioxygenase system ferredoxin--N... 28 8.7
2BNZD_PSEPU (P08087) Benzene 1,2-dioxygenase system ferredoxin--N... 28 8.7

>TODA_PSEPU (P13452) Toluene 1,2-dioxygenase system ferredoxin--NAD(+)|
           reductase component (EC 1.18.1.3)
          Length = 409

 Score = 27.7 bits (60), Expect = 8.7
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +3

Query: 12  ITXLNIATRVVALDEGTSSSYXXTQLAKG 98
           +T L++ TR ++LD+GT+ S     +A G
Sbjct: 79  VTALDVQTRTISLDDGTTLSADAIVIATG 107



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>BNZD_PSEPU (P08087) Benzene 1,2-dioxygenase system ferredoxin--NAD(+)|
           reductase component (EC 1.18.1.3) (P4 subunit)
          Length = 408

 Score = 27.7 bits (60), Expect = 8.7
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +3

Query: 12  ITXLNIATRVVALDEGTSSSYXXTQLAKG 98
           +T L++ TR ++LD+GT+ S     +A G
Sbjct: 79  VTALDVQTRTISLDDGTTLSADAIVIATG 107


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,222,930
Number of Sequences: 219361
Number of extensions: 306737
Number of successful extensions: 577
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 569
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 577
length of database: 80,573,946
effective HSP length: 37
effective length of database: 72,457,589
effective search space used: 1738982136
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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