ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags25j21
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ZAN_MOUSE (O88799) Zonadhesin precursor 29 3.9
2LIN23_CAEEL (Q09990) F-box/WD-repeat protein lin-23 (Abnormal ce... 28 5.1

>ZAN_MOUSE (O88799) Zonadhesin precursor|
          Length = 5376

 Score = 28.9 bits (63), Expect = 3.9
 Identities = 17/56 (30%), Positives = 24/56 (42%)
 Frame = +2

Query: 14   NLQGRCIRFTPQVPHYCQHHLLQPDNFXRNKXERDFQGRAXMKLVQLLLXGAHKTW 181
            NL G C + +P+VP  C+   L    +  N  +   Q     K  +  L  A KTW
Sbjct: 3912 NLDGSCEQTSPKVPSTCKEGCLCQPGYFLNNGKCVLQTHCDCKDAEGGLVPAGKTW 3967



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>LIN23_CAEEL (Q09990) F-box/WD-repeat protein lin-23 (Abnormal cell lineage|
           protein 23)
          Length = 665

 Score = 28.5 bits (62), Expect = 5.1
 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
 Frame = +2

Query: 38  FTPQVPHYCQHHLL-QPDNFXRNKXERDFQGRAXMKLVQLLLXGAHKTWITWC 193
           F  ++ H   H+ L + DNF R   +RDF       LV+L+L   +   +  C
Sbjct: 55  FMDKIVHRLSHYQLGKVDNFIRPMLQRDFISNLPAHLVELILFNVNSDSLKSC 107


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,816,542
Number of Sequences: 219361
Number of extensions: 289411
Number of successful extensions: 573
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 567
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 573
length of database: 80,573,946
effective HSP length: 40
effective length of database: 71,799,506
effective search space used: 1723188144
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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