| Clone Name | rbags25j21 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY103881.1| Zea mays PCO073464 mRNA sequence Length = 827 Score = 58.0 bits (29), Expect = 1e-05 Identities = 38/41 (92%) Strand = Plus / Minus Query: 47 caagtgccacattattgccaacatcatcttttacaaccaga 87 ||||| ||| |||||||||| |||||||||||||||||||| Sbjct: 720 caagtaccatattattgccaccatcatcttttacaaccaga 680
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 42.1 bits (21), Expect = 0.62 Identities = 39/45 (86%) Strand = Plus / Plus Query: 43 tccacaagtgccacattattgccaacatcatcttttacaaccaga 87 |||||| ||| || ||||||||| |||||||| ||||||||||| Sbjct: 32116661 tccacaggtgtcatattattgccgccatcatctcttacaaccaga 32116705
>dbj|AP003274.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0512C01 Length = 176261 Score = 42.1 bits (21), Expect = 0.62 Identities = 39/45 (86%) Strand = Plus / Plus Query: 43 tccacaagtgccacattattgccaacatcatcttttacaaccaga 87 |||||| ||| || ||||||||| |||||||| ||||||||||| Sbjct: 158475 tccacaggtgtcatattattgccgccatcatctcttacaaccaga 158519
>dbj|AK122186.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033150K13, full insert sequence Length = 724 Score = 42.1 bits (21), Expect = 0.62 Identities = 39/45 (86%) Strand = Plus / Minus Query: 43 tccacaagtgccacattattgccaacatcatcttttacaaccaga 87 |||||| ||| || ||||||||| |||||||| ||||||||||| Sbjct: 620 tccacaggtgtcatattattgccgccatcatctcttacaaccaga 576
>dbj|AK063778.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-121-D04, full insert sequence Length = 732 Score = 42.1 bits (21), Expect = 0.62 Identities = 39/45 (86%) Strand = Plus / Minus Query: 43 tccacaagtgccacattattgccaacatcatcttttacaaccaga 87 |||||| ||| || ||||||||| |||||||| ||||||||||| Sbjct: 625 tccacaggtgtcatattattgccgccatcatctcttacaaccaga 581
>gb|AC166939.2| Mus musculus BAC clone RP23-72K19 from chromosome 8, complete sequence Length = 236510 Score = 40.1 bits (20), Expect = 2.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 108 gagaaagagacttccaaggaagag 131 |||||||||||||||||| ||||| Sbjct: 164225 gagaaagagacttccaagtaagag 164202
>gb|AC122890.4| Mus musculus BAC clone RP23-63O14 from 8, complete sequence Length = 209359 Score = 40.1 bits (20), Expect = 2.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 108 gagaaagagacttccaaggaagag 131 |||||||||||||||||| ||||| Sbjct: 26618 gagaaagagacttccaagtaagag 26595
>gb|AC105311.3| Homo sapiens BAC clone RP11-15L11 from 4, complete sequence Length = 84552 Score = 40.1 bits (20), Expect = 2.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 108 gagaaagagacttccaagga 127 |||||||||||||||||||| Sbjct: 39491 gagaaagagacttccaagga 39510
>gb|AC005540.4| Homo sapiens BAC clone RP11-533I8 from 2, complete sequence Length = 133761 Score = 40.1 bits (20), Expect = 2.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 168 cccacaaaacctggatcact 187 |||||||||||||||||||| Sbjct: 30643 cccacaaaacctggatcact 30624
>emb|AL160231.4|CNS01RGW Human chromosome 14 DNA sequence BAC R-355C3 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 194173 Score = 40.1 bits (20), Expect = 2.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 169 ccacaaaacctggatcactt 188 |||||||||||||||||||| Sbjct: 118854 ccacaaaacctggatcactt 118873
>gb|AY705912.1| Zea mays cytotype NA hypothetical protein genes, complete cds; tRNA-Met (trnM-ct) gene, atpE-ct and atpB-ct pseudogenes, complete sequence; hypothetical protein genes, complete cds; NADH dehydrogenase subunit I (nad1) gene, partial cds; ribosomal protein S13 (rps13) gene, complete cds; and tRNA-Met (trnfM) gene, complete sequence; mitochondrial Length = 40000 Score = 38.2 bits (19), Expect = 9.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 36 ggtttactccacaagtgcc 54 ||||||||||||||||||| Sbjct: 25971 ggtttactccacaagtgcc 25989
>gb|AY506529.1| Zea mays strain NB mitochondrion, complete genome Length = 569630 Score = 38.2 bits (19), Expect = 9.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 36 ggtttactccacaagtgcc 54 ||||||||||||||||||| Sbjct: 180584 ggtttactccacaagtgcc 180602
>ref|XM_418613.1| PREDICTED: Gallus gallus similar to plexin domain containing 2 precursor; tumor endothelial marker 7-related; 1200007L24Rik (LOC420511), mRNA Length = 2378 Score = 38.2 bits (19), Expect = 9.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 45 cacaagtgccacattattg 63 ||||||||||||||||||| Sbjct: 2140 cacaagtgccacattattg 2158
>gb|DQ490952.1| Zea mays subsp. mays genotype male-fertile NA mitochondrion, complete genome Length = 701046 Score = 38.2 bits (19), Expect = 9.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 36 ggtttactccacaagtgcc 54 ||||||||||||||||||| Sbjct: 521583 ggtttactccacaagtgcc 521601 Score = 38.2 bits (19), Expect = 9.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 36 ggtttactccacaagtgcc 54 ||||||||||||||||||| Sbjct: 25971 ggtttactccacaagtgcc 25989
>gb|DQ490951.1| Zea mays subsp. mays genotype CMS-S mitochondrion, complete genome Length = 569553 Score = 38.2 bits (19), Expect = 9.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 36 ggtttactccacaagtgcc 54 ||||||||||||||||||| Sbjct: 424863 ggtttactccacaagtgcc 424881 Score = 38.2 bits (19), Expect = 9.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 36 ggtttactccacaagtgcc 54 ||||||||||||||||||| Sbjct: 63116 ggtttactccacaagtgcc 63134
>gb|CP000117.1| Anabaena variabilis ATCC 29413 chromosome, complete sequence Length = 6365727 Score = 38.2 bits (19), Expect = 9.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 59 tattgccaacatcatcttt 77 ||||||||||||||||||| Sbjct: 1114210 tattgccaacatcatcttt 1114228
>gb|DQ490953.1| Zea mays subsp. mays genotype CMS-T mitochondrion, complete genome Length = 535825 Score = 38.2 bits (19), Expect = 9.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 36 ggtttactccacaagtgcc 54 ||||||||||||||||||| Sbjct: 198138 ggtttactccacaagtgcc 198156 Score = 38.2 bits (19), Expect = 9.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 36 ggtttactccacaagtgcc 54 ||||||||||||||||||| Sbjct: 135048 ggtttactccacaagtgcc 135030
>emb|Z70041.1|HSU39H5 Human DNA sequence from clone LL0XNC01-39H5 on chromosome X, complete sequence Length = 16080 Score = 38.2 bits (19), Expect = 9.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 53 ccacattattgccaacatc 71 ||||||||||||||||||| Sbjct: 7217 ccacattattgccaacatc 7199
>emb|AL035705.22|HS758N20 Human DNA sequence from clone RP4-758N20 on chromosome 1p31.3-32.2 Contains the 3' end of the PRKAA2 gene for protein kinase AMP-activated alpha 2 catalytic subunit, the 3' end of a novel gene, complete sequence Length = 129618 Score = 38.2 bits (19), Expect = 9.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 63 gccaacatcatcttttaca 81 ||||||||||||||||||| Sbjct: 100054 gccaacatcatcttttaca 100072
>emb|BX035991.1|CNS08ZXN Single read from an extremity of a full-length cDNA clone made from Anopheles gambiae total adult females. 5-PRIME end of clone FK0AAA7CD06 of strain 6-9 of Anopheles gambiae (African malaria mosquito) Length = 210 Score = 38.2 bits (19), Expect = 9.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 25 taggtgcatccggtttact 43 ||||||||||||||||||| Sbjct: 1 taggtgcatccggtttact 19
>emb|Y13044.1|AVDNAK A.variabilis dnaK gene Length = 2243 Score = 38.2 bits (19), Expect = 9.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 59 tattgccaacatcatcttt 77 ||||||||||||||||||| Sbjct: 471 tattgccaacatcatcttt 453
>ref|NM_205274.1| Gallus gallus myosin, heavy polypeptide 11, smooth muscle (MYH11), mRNA Length = 6556 Score = 38.2 bits (19), Expect = 9.7 Identities = 22/23 (95%) Strand = Plus / Minus Query: 55 acattattgccaacatcatcttt 77 ||||| ||||||||||||||||| Sbjct: 4667 acattcttgccaacatcatcttt 4645
>emb|CR847868.9| Zebrafish DNA sequence from clone DKEYP-99G4 in linkage group 8, complete sequence Length = 147399 Score = 38.2 bits (19), Expect = 9.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 33 tccggtttactccacaagt 51 ||||||||||||||||||| Sbjct: 86030 tccggtttactccacaagt 86012
>gb|AC163662.3| Mus musculus BAC clone RP23-299N4 from chromosome 16, complete sequence Length = 223645 Score = 38.2 bits (19), Expect = 9.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 65 caacatcatcttttacaac 83 ||||||||||||||||||| Sbjct: 125562 caacatcatcttttacaac 125580
>emb|BX548158.10| Zebrafish DNA sequence from clone CH211-106G4 in linkage group 8, complete sequence Length = 190936 Score = 38.2 bits (19), Expect = 9.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 33 tccggtttactccacaagt 51 ||||||||||||||||||| Sbjct: 28341 tccggtttactccacaagt 28359
>gb|AC022400.9| Homo sapiens chromosome 10 clone RP11-574K11, complete sequence Length = 183797 Score = 38.2 bits (19), Expect = 9.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 162 agggtgcccacaaaacctg 180 ||||||||||||||||||| Sbjct: 159844 agggtgcccacaaaacctg 159862
>gb|AC099789.2| Homo sapiens chromosome 1 clone RP11-377K22, complete sequence Length = 174162 Score = 38.2 bits (19), Expect = 9.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 63 gccaacatcatcttttaca 81 ||||||||||||||||||| Sbjct: 132602 gccaacatcatcttttaca 132584
>gb|AC079178.20| Homo sapiens Xp BAC RP11-702C7 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 114665 Score = 38.2 bits (19), Expect = 9.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 111 aaagagacttccaaggaag 129 ||||||||||||||||||| Sbjct: 26391 aaagagacttccaaggaag 26409
>gb|CP000254.1| Methanospirillum hungatei JF-1, complete genome Length = 3544738 Score = 38.2 bits (19), Expect = 9.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 21 aaggtaggtgcatccggtt 39 ||||||||||||||||||| Sbjct: 593249 aaggtaggtgcatccggtt 593231
>emb|BX569778.15| Zebrafish DNA sequence from clone DKEY-21J8 in linkage group 1, complete sequence Length = 255895 Score = 38.2 bits (19), Expect = 9.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 65 caacatcatcttttacaac 83 ||||||||||||||||||| Sbjct: 223228 caacatcatcttttacaac 223246
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 38.2 bits (19), Expect = 9.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 12 acaacttacaaggtaggtg 30 ||||||||||||||||||| Sbjct: 19574578 acaacttacaaggtaggtg 19574596
>dbj|AP005110.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0605D08 Length = 144340 Score = 38.2 bits (19), Expect = 9.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 12 acaacttacaaggtaggtg 30 ||||||||||||||||||| Sbjct: 40864 acaacttacaaggtaggtg 40882
>emb|X06546.1|GGMYHGSM Chicken mRNA for gizzard smooth muscle myosin heavy chain (MHC) Length = 6556 Score = 38.2 bits (19), Expect = 9.7 Identities = 22/23 (95%) Strand = Plus / Minus Query: 55 acattattgccaacatcatcttt 77 ||||| ||||||||||||||||| Sbjct: 4667 acattcttgccaacatcatcttt 4645
>emb|BX927109.13| Zebrafish DNA sequence from clone CH211-80D23 in linkage group 18, complete sequence Length = 169784 Score = 38.2 bits (19), Expect = 9.7 Identities = 22/23 (95%) Strand = Plus / Plus Query: 51 tgccacattattgccaacatcat 73 |||||||| |||||||||||||| Sbjct: 17783 tgccacatcattgccaacatcat 17805
>emb|BX936417.8| Zebrafish DNA sequence from clone DKEY-231D7 in linkage group 18, complete sequence Length = 151853 Score = 38.2 bits (19), Expect = 9.7 Identities = 22/23 (95%) Strand = Plus / Minus Query: 51 tgccacattattgccaacatcat 73 |||||||| |||||||||||||| Sbjct: 147264 tgccacatcattgccaacatcat 147242
>emb|BX908747.25| Zebrafish DNA sequence from clone DKEY-58J15 in linkage group 1, complete sequence Length = 232503 Score = 38.2 bits (19), Expect = 9.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 65 caacatcatcttttacaac 83 ||||||||||||||||||| Sbjct: 138982 caacatcatcttttacaac 138964
>emb|AL807379.17| Mouse DNA sequence from clone RP23-378L22 on chromosome 4, complete sequence Length = 186519 Score = 38.2 bits (19), Expect = 9.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 11 cacaacttacaaggtaggt 29 ||||||||||||||||||| Sbjct: 119534 cacaacttacaaggtaggt 119552
>gb|AC140281.5| Mus musculus BAC clone RP24-329M4 from 16, complete sequence Length = 146853 Score = 38.2 bits (19), Expect = 9.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 65 caacatcatcttttacaac 83 ||||||||||||||||||| Sbjct: 31836 caacatcatcttttacaac 31854
>emb|CR974582.5| Mouse DNA sequence from clone RP23-84L8 on chromosome 12, complete sequence Length = 165056 Score = 38.2 bits (19), Expect = 9.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 1 acttctggaacacaactta 19 ||||||||||||||||||| Sbjct: 132990 acttctggaacacaactta 133008
>dbj|AB209474.1| Homo sapiens mRNA for calcium/calmodulin-dependent protein kinase II gamma isoform 6 variant protein Length = 5953 Score = 38.2 bits (19), Expect = 9.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 162 agggtgcccacaaaacctg 180 ||||||||||||||||||| Sbjct: 2181 agggtgcccacaaaacctg 2163 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,332,128 Number of Sequences: 3902068 Number of extensions: 1332128 Number of successful extensions: 90986 Number of sequences better than 10.0: 40 Number of HSP's better than 10.0 without gapping: 40 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 90831 Number of HSP's gapped (non-prelim): 155 length of query: 195 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 173 effective length of database: 17,147,199,772 effective search space: 2966465560556 effective search space used: 2966465560556 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)