ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal1e08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|AL591985.1|RME591985 Sinorhizobium meliloti 1021 complete pSymB 42 0.27
2gb|U59229.1|RMU59229 Rhizobium meliloti megaplasmid pRmeSU47b ph... 42 0.27
3gb|AC093255.2| Homo sapiens chromosome 5 clone RP11-181G6, compl... 40 1.0
4gb|AC137842.8| Mus musculus chromosome 15, clone RP23-91M6, comp... 38 4.1
5gb|AC115735.8| Mus musculus chromosome 15, clone RP23-470I4, com... 38 4.1
6gb|AC110761.3| Homo sapiens BAC clone RP11-45C13 from 4, complet... 38 4.1

>emb|AL591985.1|RME591985 Sinorhizobium meliloti 1021 complete pSymB
          Length = 1683333

 Score = 42.1 bits (21), Expect = 0.27
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 33     gtatgcagattggtaatcacg 53
              |||||||||||||||||||||
Sbjct: 923500 gtatgcagattggtaatcacg 923520



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>gb|U59229.1|RMU59229 Rhizobium meliloti megaplasmid pRmeSU47b phosphate transport system
           PhoC (phoC), PhoD precursor (phoD), PhoE (phoE), and
           PhoT (phoT) genes, complete cds
          Length = 5705

 Score = 42.1 bits (21), Expect = 0.27
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 33  gtatgcagattggtaatcacg 53
           |||||||||||||||||||||
Sbjct: 898 gtatgcagattggtaatcacg 878



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>gb|AC093255.2| Homo sapiens chromosome 5 clone RP11-181G6, complete sequence
          Length = 95597

 Score = 40.1 bits (20), Expect = 1.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 53    gtctcaagcacttgttaaat 72
             ||||||||||||||||||||
Sbjct: 47766 gtctcaagcacttgttaaat 47747



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>gb|AC137842.8| Mus musculus chromosome 15, clone RP23-91M6, complete sequence
          Length = 230609

 Score = 38.2 bits (19), Expect = 4.1
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 20     ccactagcaccatgtatgcagat 42
              |||||||||||||| ||||||||
Sbjct: 221113 ccactagcaccatggatgcagat 221091



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>gb|AC115735.8| Mus musculus chromosome 15, clone RP23-470I4, complete sequence
          Length = 177117

 Score = 38.2 bits (19), Expect = 4.1
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 20    ccactagcaccatgtatgcagat 42
             |||||||||||||| ||||||||
Sbjct: 30495 ccactagcaccatggatgcagat 30473



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>gb|AC110761.3| Homo sapiens BAC clone RP11-45C13 from 4, complete sequence
          Length = 153458

 Score = 38.2 bits (19), Expect = 4.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 22    actagcaccatgtatgcag 40
             |||||||||||||||||||
Sbjct: 58942 actagcaccatgtatgcag 58924


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 411,443
Number of Sequences: 3902068
Number of extensions: 411443
Number of successful extensions: 24784
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 24777
Number of HSP's gapped (non-prelim): 7
length of query: 95
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 74
effective length of database: 17,151,101,840
effective search space: 1269181536160
effective search space used: 1269181536160
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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