ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags25i13
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|BT018779.1| Zea mays clone EL01N0526C09.d mRNA sequence 143 6e-31
2gb|BT018139.1| Zea mays clone EL01N0554H01.c mRNA sequence 143 6e-31
3gb|AY104969.1| Zea mays PCO070942 mRNA sequence 143 6e-31
4ref|XM_463795.1| Oryza sativa (japonica cultivar-group), mRNA 139 9e-30
5ref|XM_506674.1| PREDICTED Oryza sativa (japonica cultivar-group... 139 9e-30
6dbj|AK101537.1| Oryza sativa (japonica cultivar-group) cDNA clon... 139 9e-30
7dbj|AK070603.1| Oryza sativa (japonica cultivar-group) cDNA clon... 139 9e-30
8gb|AY103778.1| Zea mays PCO063180 mRNA sequence 101 2e-18
9gb|AY675582.1| Zea mays RuBisCo subunit binding-protein beta sub... 96 1e-16
10ref|NM_185419.2| Oryza sativa (japonica cultivar-group), mRNA 92 2e-15
11dbj|AK101334.1| Oryza sativa (japonica cultivar-group) cDNA clon... 92 2e-15
12dbj|AK062098.1| Oryza sativa (japonica cultivar-group) cDNA clon... 92 2e-15
13dbj|AK060117.1| Oryza sativa (japonica cultivar-group) cDNA clon... 92 2e-15
14emb|Z68903.1|SCCPN60 S.cereale cv. Petkus "Halo" encoding cpn60 86 1e-13
15dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 74 4e-10
16dbj|AP004187.3| Oryza sativa (japonica cultivar-group) genomic D... 74 4e-10
17ref|NM_179480.1| Arabidopsis thaliana CPN60B (CHAPERONIN 60 BETA... 62 2e-06
18ref|NM_104424.2| Arabidopsis thaliana CPN60B (CHAPERONIN 60 BETA... 62 2e-06
19gb|AY081501.1| Arabidopsis thaliana Rubisco subunit binding-prot... 62 2e-06
20gb|AF386945.1|AF386945 Arabidopsis thaliana Rubisco subunit bind... 62 2e-06
21gb|BT013332.1| Lycopersicon esculentum clone 135060F, mRNA sequence 60 7e-06
22dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 58 3e-05
23dbj|AP001389.1| Oryza sativa (japonica cultivar-group) genomic D... 58 3e-05
24gb|DQ226886.1| Boechera divaricarpa isolate SLW-C-H11 mRNA sequence 54 4e-04
25gb|M35600.1|BNA60CPNB B.napus plastid 60-kDa chaperonin-60 beta-... 54 4e-04
26dbj|AB158542.1| Ipomoea nil cpn60 beta mRNA for 60 kDa chaperoni... 52 0.002
27gb|U46136.1|STU46136 Solanum tuberosum chaperonin-60 beta subuni... 52 0.002
28emb|BX814891.1|CNS0ADZ4 Arabidopsis thaliana Full-length cDNA Co... 50 0.006
29ref|NM_102387.1| Arabidopsis thaliana ATP binding / protein bind... 48 0.025
30dbj|AK221637.1| Arabidopsis thaliana mRNA for chaperonin precurs... 48 0.025
31emb|CT025413.2| Xenopus tropicalis finished cDNA, clone TGas098b24 46 0.100
32emb|AL354775.12| Human DNA sequence from clone RP11-223F20 on ch... 44 0.39
33ref|NM_112193.1| Arabidopsis thaliana ATP binding / protein bind... 42 1.6
34ref|XM_708007.1| Candida albicans SC5314 heat shock protein 60 (... 42 1.6
35ref|XM_707984.1| Candida albicans SC5314 heat shock protein 60 (... 42 1.6
36gb|AC005223.1| Arabidopsis thaliana chromosome I BAC T5A14, comp... 42 1.6
37dbj|AK118623.2| Arabidopsis thaliana At3g13470 mRNA for putative... 42 1.6
38gb|AF085694.1|AF085694 Candida albicans heat shock protein 60 (H... 42 1.6
39gb|BC068415.1| Danio rerio heat shock 60kD protein 1 (chaperonin... 40 6.2
40gb|BC044557.1| Danio rerio heat shock 60kD protein 1 (chaperonin... 40 6.2
41ref|NM_181330.3| Danio rerio heat shock 60kD protein 1 (chaperon... 40 6.2
42ref|NM_080186.2| Drosophila melanogaster Heat shock protein 60 r... 40 6.2
43gb|AY047544.1| Drosophila melanogaster GH05807 full length cDNA 40 6.2
44gb|AC092235.1|AC092235 Drosophila melanogaster, chromosome 2L, r... 40 6.2
45dbj|AB048353.1| Paramecium caudatum mRNA for hsp60, partial cds 40 6.2
46emb|BX649398.4| Zebrafish DNA sequence from clone DKEY-202B22 in... 40 6.2
47gb|AE003588.3| Drosophila melanogaster chromosome 2L, section 3 ... 40 6.2
48gb|BT001426.1| Drosophila melanogaster GH15356 full insert cDNA 40 6.2
49gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. ... 40 6.2
50gb|AC004116.1|AC004116 Drosophila melanogaster (P1 DS07981 (D155... 40 6.2
51emb|AL928696.6| Mouse DNA sequence from clone RP23-387G11 on chr... 40 6.2
52gb|DQ248868.1| Corynebacterium glutamicum glyceraldehyde 3-phosp... 40 6.2 
>gb|BT018779.1| Zea mays clone EL01N0526C09.d mRNA sequence
          Length = 2155

 Score =  143 bits (72), Expect = 6e-31
 Identities = 96/104 (92%)
 Strand = Plus / Minus

                                                                        
Query: 354  acggcgtcagaggtgatgaatgtcttggccaccgatgcggcatgctccaagcagcacctc 413
            ||||| |||||||||||||| || || ||||||||||| |||||||||||||||||||||
Sbjct: 1809 acggcatcagaggtgatgaaggttttcgccaccgatgcagcatgctccaagcagcacctc 1750

                                                        
Query: 414  acaacctttgtgggatcaataataccagcagccatcaaatcctc 457
            |||||||| ||||||||||| ||||||||||||||||| |||||
Sbjct: 1749 acaaccttggtgggatcaatgataccagcagccatcaagtcctc 1706
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>gb|BT018139.1| Zea mays clone EL01N0554H01.c mRNA sequence
          Length = 975

 Score =  143 bits (72), Expect = 6e-31
 Identities = 96/104 (92%)
 Strand = Plus / Minus

                                                                       
Query: 354 acggcgtcagaggtgatgaatgtcttggccaccgatgcggcatgctccaagcagcacctc 413
           ||||| |||||||||||||| || || ||||||||||| |||||||||||||||||||||
Sbjct: 604 acggcatcagaggtgatgaaggttttcgccaccgatgcagcatgctccaagcagcacctc 545

                                                       
Query: 414 acaacctttgtgggatcaataataccagcagccatcaaatcctc 457
           |||||||| ||||||||||| ||||||||||||||||| |||||
Sbjct: 544 acaaccttggtgggatcaatgataccagcagccatcaagtcctc 501
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>gb|AY104969.1| Zea mays PCO070942 mRNA sequence
          Length = 2290

 Score =  143 bits (72), Expect = 6e-31
 Identities = 96/104 (92%)
 Strand = Plus / Minus

                                                                        
Query: 354  acggcgtcagaggtgatgaatgtcttggccaccgatgcggcatgctccaagcagcacctc 413
            ||||| |||||||||||||| || || ||||||||||| |||||||||||||||||||||
Sbjct: 1937 acggcatcagaggtgatgaaggttttcgccaccgatgcagcatgctccaagcagcacctc 1878

                                                        
Query: 414  acaacctttgtgggatcaataataccagcagccatcaaatcctc 457
            |||||||| ||||||||||| ||||||||||||||||| |||||
Sbjct: 1877 acaaccttggtgggatcaatgataccagcagccatcaagtcctc 1834
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>ref|XM_463795.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2155

 Score =  139 bits (70), Expect = 9e-30
 Identities = 109/122 (89%)
 Strand = Plus / Minus

                                                                        
Query: 336  tccttgatgtccaccacgacggcgtcagaggtgatgaatgtcttggccaccgatgcggca 395
            ||||||||||||||||| || || || || ||||||||||| || |||||||| || |||
Sbjct: 1834 tccttgatgtccaccacaacagcatctgatgtgatgaatgttttcgccaccgacgcagca 1775

                                                                        
Query: 396  tgctccaagcagcacctcacaacctttgtgggatcaataataccagcagccatcaaatcc 455
            ||||||||||| || ||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct: 1774 tgctccaagcaacatctcaccaccttggtgggatcaataataccagcagccatcaaatcc 1715

              
Query: 456  tc 457
            ||
Sbjct: 1714 tc 1713
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>ref|XM_506674.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1435_F07.26 mRNA
          Length = 2310

 Score =  139 bits (70), Expect = 9e-30
 Identities = 109/122 (89%)
 Strand = Plus / Minus

                                                                        
Query: 336  tccttgatgtccaccacgacggcgtcagaggtgatgaatgtcttggccaccgatgcggca 395
            ||||||||||||||||| || || || || ||||||||||| || |||||||| || |||
Sbjct: 1854 tccttgatgtccaccacaacagcatctgatgtgatgaatgttttcgccaccgacgcagca 1795

                                                                        
Query: 396  tgctccaagcagcacctcacaacctttgtgggatcaataataccagcagccatcaaatcc 455
            ||||||||||| || ||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct: 1794 tgctccaagcaacatctcaccaccttggtgggatcaataataccagcagccatcaaatcc 1735

              
Query: 456  tc 457
            ||
Sbjct: 1734 tc 1733
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>dbj|AK101537.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033048E22, full
            insert sequence
          Length = 2154

 Score =  139 bits (70), Expect = 9e-30
 Identities = 109/122 (89%)
 Strand = Plus / Minus

                                                                        
Query: 336  tccttgatgtccaccacgacggcgtcagaggtgatgaatgtcttggccaccgatgcggca 395
            ||||||||||||||||| || || || || ||||||||||| || |||||||| || |||
Sbjct: 1833 tccttgatgtccaccacaacagcatctgatgtgatgaatgttttcgccaccgacgcagca 1774

                                                                        
Query: 396  tgctccaagcagcacctcacaacctttgtgggatcaataataccagcagccatcaaatcc 455
            ||||||||||| || ||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct: 1773 tgctccaagcaacatctcaccaccttggtgggatcaataataccagcagccatcaaatcc 1714

              
Query: 456  tc 457
            ||
Sbjct: 1713 tc 1712
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>dbj|AK070603.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023059D06, full
            insert sequence
          Length = 2310

 Score =  139 bits (70), Expect = 9e-30
 Identities = 109/122 (89%)
 Strand = Plus / Minus

                                                                        
Query: 336  tccttgatgtccaccacgacggcgtcagaggtgatgaatgtcttggccaccgatgcggca 395
            ||||||||||||||||| || || || || ||||||||||| || |||||||| || |||
Sbjct: 1854 tccttgatgtccaccacaacagcatctgatgtgatgaatgttttcgccaccgacgcagca 1795

                                                                        
Query: 396  tgctccaagcagcacctcacaacctttgtgggatcaataataccagcagccatcaaatcc 455
            ||||||||||| || ||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct: 1794 tgctccaagcaacatctcaccaccttggtgggatcaataataccagcagccatcaaatcc 1735

              
Query: 456  tc 457
            ||
Sbjct: 1734 tc 1733
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>gb|AY103778.1| Zea mays PCO063180 mRNA sequence
          Length = 2338

 Score =  101 bits (51), Expect = 2e-18
 Identities = 75/83 (90%)
 Strand = Plus / Minus

                                                                        
Query: 375  gtcttggccaccgatgcggcatgctccaagcagcacctcacaacctttgtgggatcaata 434
            |||||||||||||| |||||||||||||| ||||| ||||| ||||| || |||||||| 
Sbjct: 1942 gtcttggccaccgacgcggcatgctccaaacagcatctcaccaccttagtaggatcaatg 1883

                                   
Query: 435  ataccagcagccatcaaatcctc 457
            ||||||||||||||||| |||||
Sbjct: 1882 ataccagcagccatcaagtcctc 1860
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>gb|AY675582.1| Zea mays RuBisCo subunit binding-protein beta subunit mRNA, partial
            cds
          Length = 1471

 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 69/76 (90%)
 Strand = Plus / Minus

                                                                        
Query: 375  gtcttggccaccgatgcggcatgctccaagcagcacctcacaacctttgtgggatcaata 434
            |||||||||||||| ||||| |||||||||||||| ||||| ||||| ||||| ||||| 
Sbjct: 1137 gtcttggccaccgacgcggcgtgctccaagcagcatctcaccaccttggtggggtcaatg 1078

                            
Query: 435  ataccagcagccatca 450
            ||||||||||||||||
Sbjct: 1077 ataccagcagccatca 1062
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>ref|NM_185419.2| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2131

 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 103/122 (84%)
 Strand = Plus / Minus

                                                                        
Query: 336  tccttgatgtccaccacgacggcgtcagaggtgatgaatgtcttggccaccgatgcggca 395
            |||||||| || || |||||| | || || |||| |||||||||||||||||| || |||
Sbjct: 1840 tccttgatctcgacgacgacgacatccgatgtgaggaatgtcttggccaccgacgcagca 1781

                                                                        
Query: 396  tgctccaagcagcacctcacaacctttgtgggatcaataataccagcagccatcaaatcc 455
            ||||| |  || || ||||| ||||| ||||| ||||| |||||||||||||||||||||
Sbjct: 1780 tgctcaagacaacatctcaccaccttagtggggtcaatgataccagcagccatcaaatcc 1721

              
Query: 456  tc 457
            ||
Sbjct: 1720 tc 1719
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>dbj|AK101334.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033034I03, full
            insert sequence
          Length = 2131

 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 103/122 (84%)
 Strand = Plus / Minus

                                                                        
Query: 336  tccttgatgtccaccacgacggcgtcagaggtgatgaatgtcttggccaccgatgcggca 395
            |||||||| || || |||||| | || || |||| |||||||||||||||||| || |||
Sbjct: 1840 tccttgatctcgacgacgacgacatccgatgtgaggaatgtcttggccaccgacgcagca 1781

                                                                        
Query: 396  tgctccaagcagcacctcacaacctttgtgggatcaataataccagcagccatcaaatcc 455
            ||||| |  || || ||||| ||||| ||||| ||||| |||||||||||||||||||||
Sbjct: 1780 tgctcaagacaacatctcaccaccttagtggggtcaatgataccagcagccatcaaatcc 1721

              
Query: 456  tc 457
            ||
Sbjct: 1720 tc 1719
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>dbj|AK062098.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-045-A02, full
            insert sequence
          Length = 1781

 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 103/122 (84%)
 Strand = Plus / Minus

                                                                        
Query: 336  tccttgatgtccaccacgacggcgtcagaggtgatgaatgtcttggccaccgatgcggca 395
            |||||||| || || |||||| | || || |||| |||||||||||||||||| || |||
Sbjct: 1508 tccttgatctcgacgacgacgacatccgatgtgaggaatgtcttggccaccgacgcagca 1449

                                                                        
Query: 396  tgctccaagcagcacctcacaacctttgtgggatcaataataccagcagccatcaaatcc 455
            ||||| |  || || ||||| ||||| ||||| ||||| |||||||||||||||||||||
Sbjct: 1448 tgctcaagacaacatctcaccaccttagtggggtcaatgataccagcagccatcaaatcc 1389

              
Query: 456  tc 457
            ||
Sbjct: 1388 tc 1387
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>dbj|AK060117.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-308-E09, full
           insert sequence
          Length = 1097

 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 103/122 (84%)
 Strand = Plus / Minus

                                                                       
Query: 336 tccttgatgtccaccacgacggcgtcagaggtgatgaatgtcttggccaccgatgcggca 395
           |||||||| || || |||||| | || || |||| |||||||||||||||||| || |||
Sbjct: 834 tccttgatctcgacgacgacgacatccgatgtgaggaatgtcttggccaccgacgcagca 775

                                                                       
Query: 396 tgctccaagcagcacctcacaacctttgtgggatcaataataccagcagccatcaaatcc 455
           ||||| |  || || ||||| ||||| ||||| ||||| |||||||||||||||||||||
Sbjct: 774 tgctcaagacaacatctcaccaccttagtggggtcaatgataccagcagccatcaaatcc 715

             
Query: 456 tc 457
           ||
Sbjct: 714 tc 713
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>emb|Z68903.1|SCCPN60 S.cereale cv. Petkus "Halo" encoding cpn60
          Length = 1707

 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 73/83 (87%)
 Strand = Plus / Minus

                                                                        
Query: 375  gtcttggccaccgatgcggcatgctccaagcagcacctcacaacctttgtgggatcaata 434
            |||||||||||||||||||| ||||||| ||| || ||||| ||||| ||||| || || 
Sbjct: 1406 gtcttggccaccgatgcggcgtgctccaggcaacatctcaccaccttggtggggtcgatg 1347

                                   
Query: 435  ataccagcagccatcaaatcctc 457
            ||||||||||||||||| |||||
Sbjct: 1346 ataccagcagccatcaagtcctc 1324
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2,
              complete sequence
          Length = 35954743

 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 73/85 (85%)
 Strand = Plus / Minus

                                                                          
Query: 336    tccttgatgtccaccacgacggcgtcagaggtgatgaatgtcttggccaccgatgcggca 395
              ||||||||||||||||| || || || || ||||||||||| || |||||||| || |||
Sbjct: 163191 tccttgatgtccaccacaacagcatctgatgtgatgaatgttttcgccaccgacgcagca 163132

                                       
Query: 396    tgctccaagcagcacctcacaacct 420
              ||||||||||| || ||||| ||||
Sbjct: 163131 tgctccaagcaacatctcaccacct 163107



 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 40/41 (97%)
 Strand = Plus / Minus

                                                       
Query: 417    acctttgtgggatcaataataccagcagccatcaaatcctc 457
              ||||| |||||||||||||||||||||||||||||||||||
Sbjct: 162831 accttggtgggatcaataataccagcagccatcaaatcctc 162791
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>dbj|AP004187.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OJ1435_F07
          Length = 139041

 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 73/85 (85%)
 Strand = Plus / Minus

                                                                          
Query: 336    tccttgatgtccaccacgacggcgtcagaggtgatgaatgtcttggccaccgatgcggca 395
              ||||||||||||||||| || || || || ||||||||||| || |||||||| || |||
Sbjct: 112218 tccttgatgtccaccacaacagcatctgatgtgatgaatgttttcgccaccgacgcagca 112159

                                       
Query: 396    tgctccaagcagcacctcacaacct 420
              ||||||||||| || ||||| ||||
Sbjct: 112158 tgctccaagcaacatctcaccacct 112134



 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 40/41 (97%)
 Strand = Plus / Minus

                                                       
Query: 417    acctttgtgggatcaataataccagcagccatcaaatcctc 457
              ||||| |||||||||||||||||||||||||||||||||||
Sbjct: 111858 accttggtgggatcaataataccagcagccatcaaatcctc 111818
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>ref|NM_179480.1| Arabidopsis thaliana CPN60B (CHAPERONIN 60 BETA); ATP binding /
            protein binding AT1G55490 (CPN60B) transcript variant
            AT1G55490.2 mRNA, complete cds
          Length = 2060

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 52/59 (88%)
 Strand = Plus / Minus

                                                                       
Query: 399  tccaagcagcacctcacaacctttgtgggatcaataataccagcagccatcaaatcctc 457
            |||||||| || |||||||||||||| ||||| || || || |||||||||||||||||
Sbjct: 1788 tccaagcaacatctcacaacctttgttggatcgatgattcctgcagccatcaaatcctc 1730
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>ref|NM_104424.2| Arabidopsis thaliana CPN60B (CHAPERONIN 60 BETA); ATP binding /
            protein binding AT1G55490 (CPN60B) transcript variant
            AT1G55490.1 mRNA, complete cds
          Length = 2087

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 52/59 (88%)
 Strand = Plus / Minus

                                                                       
Query: 399  tccaagcagcacctcacaacctttgtgggatcaataataccagcagccatcaaatcctc 457
            |||||||| || |||||||||||||| ||||| || || || |||||||||||||||||
Sbjct: 1815 tccaagcaacatctcacaacctttgttggatcgatgattcctgcagccatcaaatcctc 1757
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>gb|AY081501.1| Arabidopsis thaliana Rubisco subunit binding-protein beta subunit
            (At1g55490) mRNA, complete cds
          Length = 1844

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 52/59 (88%)
 Strand = Plus / Minus

                                                                       
Query: 399  tccaagcagcacctcacaacctttgtgggatcaataataccagcagccatcaaatcctc 457
            |||||||| || |||||||||||||| ||||| || || || |||||||||||||||||
Sbjct: 1685 tccaagcaacatctcacaacctttgttggatcgatgattcctgcagccatcaaatcctc 1627
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>gb|AF386945.1|AF386945 Arabidopsis thaliana Rubisco subunit binding-protein beta subunit
            (T5A14.11) mRNA, complete cds
          Length = 2060

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 52/59 (88%)
 Strand = Plus / Minus

                                                                       
Query: 399  tccaagcagcacctcacaacctttgtgggatcaataataccagcagccatcaaatcctc 457
            |||||||| || |||||||||||||| ||||| || || || |||||||||||||||||
Sbjct: 1807 tccaagcaacatctcacaacctttgttggatcgatgattcctgcagccatcaaatcctc 1749
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>gb|BT013332.1| Lycopersicon esculentum clone 135060F, mRNA sequence
          Length = 2189

 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 54/62 (87%)
 Strand = Plus / Minus

                                                                        
Query: 393  gcatgctccaagcagcacctcacaacctttgtgggatcaataataccagcagccatcaaa 452
            |||||||||||||| || || || || ||||| |||||||| |||||||||||||| |||
Sbjct: 1754 gcatgctccaagcaacatcttaccacttttgtaggatcaattataccagcagccattaaa 1695

              
Query: 453  tc 454
            ||
Sbjct: 1694 tc 1693
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6,
              complete sequence
          Length = 30731886

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 38/41 (92%)
 Strand = Plus / Plus

                                                       
Query: 417    acctttgtgggatcaataataccagcagccatcaaatcctc 457
              ||||| ||||| ||||| |||||||||||||||||||||||
Sbjct: 810972 accttagtggggtcaatgataccagcagccatcaaatcctc 811012



 Score = 50.1 bits (25), Expect = 0.006
 Identities = 55/65 (84%)
 Strand = Plus / Plus

                                                                          
Query: 336    tccttgatgtccaccacgacggcgtcagaggtgatgaatgtcttggccaccgatgcggca 395
              |||||||| || || |||||| | || || |||| |||||||||||||||||| || |||
Sbjct: 810439 tccttgatctcgacgacgacgacatccgatgtgaggaatgtcttggccaccgacgcagca 810498

                   
Query: 396    tgctc 400
              |||||
Sbjct: 810499 tgctc 810503
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>dbj|AP001389.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0541H01
          Length = 157519

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 38/41 (92%)
 Strand = Plus / Plus

                                                      
Query: 417   acctttgtgggatcaataataccagcagccatcaaatcctc 457
             ||||| ||||| ||||| |||||||||||||||||||||||
Sbjct: 94106 accttagtggggtcaatgataccagcagccatcaaatcctc 94146



 Score = 50.1 bits (25), Expect = 0.006
 Identities = 55/65 (84%)
 Strand = Plus / Plus

                                                                         
Query: 336   tccttgatgtccaccacgacggcgtcagaggtgatgaatgtcttggccaccgatgcggca 395
             |||||||| || || |||||| | || || |||| |||||||||||||||||| || |||
Sbjct: 93573 tccttgatctcgacgacgacgacatccgatgtgaggaatgtcttggccaccgacgcagca 93632

                  
Query: 396   tgctc 400
             |||||
Sbjct: 93633 tgctc 93637
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>gb|DQ226886.1| Boechera divaricarpa isolate SLW-C-H11 mRNA sequence
          Length = 331

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 51/59 (86%)
 Strand = Plus / Minus

                                                                      
Query: 399 tccaagcagcacctcacaacctttgtgggatcaataataccagcagccatcaaatcctc 457
           |||||||| || |||||||||||||| ||||| || || || |||||||| ||||||||
Sbjct: 61  tccaagcaacatctcacaacctttgttggatcgatgattcctgcagccattaaatcctc 3
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>gb|M35600.1|BNA60CPNB B.napus plastid 60-kDa chaperonin-60 beta-polypeptide (cpn-60 beta)
            mRNA, partial cds
          Length = 1982

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 72/87 (82%)
 Strand = Plus / Minus

                                                                        
Query: 371  gaatgtcttggccaccgatgcggcatgctccaagcagcacctcacaacctttgtgggatc 430
            ||||||||| || ||||| || ||||| |||||||| || ||||||||||| || |||||
Sbjct: 1776 gaatgtctttgcaaccgaagctgcatgttccaagcaacatctcacaaccttagttggatc 1717

                                       
Query: 431  aataataccagcagccatcaaatcctc 457
             || || || |||||||| | ||||||
Sbjct: 1716 gatgattcctgcagccattagatcctc 1690
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>dbj|AB158542.1| Ipomoea nil cpn60 beta mRNA for 60 kDa chaperonin beta subunit-like
           protein, partial cds
          Length = 437

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 50/58 (86%)
 Strand = Plus / Minus

                                                                     
Query: 394 catgctccaagcagcacctcacaacctttgtgggatcaataataccagcagccatcaa 451
           ||||||| || || || ||||| ||||| || ||||||||||| ||||||||||||||
Sbjct: 61  catgctctaaacaacatctcaccaccttggttggatcaataattccagcagccatcaa 4
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>gb|U46136.1|STU46136 Solanum tuberosum chaperonin-60 beta subunit mRNA, nuclear gene
            encoding chloroplast protein, complete cds
          Length = 2078

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 65/78 (83%)
 Strand = Plus / Minus

                                                                        
Query: 371  gaatgtcttggccaccgatgcggcatgctccaagcagcacctcacaacctttgtgggatc 430
            ||||||||| ||||| ||||| || || || |  || |||||||| |||||||| |||||
Sbjct: 1747 gaatgtcttagccacagatgcagcgtgttctagacaacacctcaccacctttgttggatc 1688

                              
Query: 431  aataataccagcagccat 448
            ||| || |||||||||||
Sbjct: 1687 aatgatgccagcagccat 1670
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>emb|BX814891.1|CNS0ADZ4 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTLS16ZG05 of Adult vegetative tissue of strain col-0
            of Arabidopsis thaliana (thale cress)
          Length = 2000

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 46/53 (86%)
 Strand = Plus / Minus

                                                                 
Query: 399  tccaagcagcacctcacaacctttgtgggatcaataataccagcagccatcaa 451
            |||||||| || |||||||||||||| ||||| || || || |||||||||||
Sbjct: 1769 tccaagcaacatctcacaacctttgttggatcgatgattcctgcagccatcaa 1717
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>ref|NM_102387.1| Arabidopsis thaliana ATP binding / protein binding AT1G26230 mRNA,
            complete cds
          Length = 1843

 Score = 48.1 bits (24), Expect = 0.025
 Identities = 39/44 (88%)
 Strand = Plus / Minus

                                                        
Query: 399  tccaagcagcacctcacaacctttgtgggatcaataataccagc 442
            |||||||| || ||||||||||| || |||||||| ||||||||
Sbjct: 1644 tccaagcaacatctcacaaccttggttggatcaattataccagc 1601
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>dbj|AK221637.1| Arabidopsis thaliana mRNA for chaperonin precursor, complete cds,
            clone: RAFL07-98-N18
          Length = 2011

 Score = 48.1 bits (24), Expect = 0.025
 Identities = 39/44 (88%)
 Strand = Plus / Minus

                                                        
Query: 399  tccaagcagcacctcacaacctttgtgggatcaataataccagc 442
            |||||||| || ||||||||||| || |||||||| ||||||||
Sbjct: 1672 tccaagcaacatctcacaaccttggttggatcaattataccagc 1629
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>emb|CT025413.2| Xenopus tropicalis finished cDNA, clone TGas098b24
          Length = 2139

 Score = 46.1 bits (23), Expect = 0.100
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                       
Query: 410  cctcacaacctttgtgggatcaataat 436
            |||||||||||||||||| ||||||||
Sbjct: 1611 cctcacaacctttgtggggtcaataat 1585
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>emb|AL354775.12| Human DNA sequence from clone RP11-223F20 on chromosome 13 Contains a
             novel heterogeneous nuclear ribonucleoprotein family A
             protein and a novel gene, complete sequence
          Length = 168897

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 205   ttcttttctcaaagtataacct 226
             ||||||||||||||||||||||
Sbjct: 20522 ttcttttctcaaagtataacct 20543
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>ref|NM_112193.1| Arabidopsis thaliana ATP binding / protein binding AT3G13470 mRNA,
            complete cds
          Length = 1922

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 51/61 (83%)
 Strand = Plus / Minus

                                                                        
Query: 390  gcggcatgctccaagcagcacctcacaacctttgtgggatcaataataccagcagccatc 449
            |||||||| || ||||| || |||||||||||||| || || || || || |||||||||
Sbjct: 1682 gcggcatgttctaagcaacatctcacaacctttgtcgggtcgatgatgcctgcagccatc 1623

             
Query: 450  a 450
            |
Sbjct: 1622 a 1622
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>ref|XM_708007.1| Candida albicans SC5314 heat shock protein 60 (CaO19.8336), mRNA
          Length = 1701

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 426  ggatcaataataccagcagccatca 450
            |||||||||||||||||||| ||||
Sbjct: 1547 ggatcaataataccagcagcaatca 1523
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>ref|XM_707984.1| Candida albicans SC5314 heat shock protein 60 (CaO19.717), mRNA
          Length = 1701

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 426  ggatcaataataccagcagccatca 450
            |||||||||||||||||||| ||||
Sbjct: 1547 ggatcaataataccagcagcaatca 1523
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>gb|AC005223.1| Arabidopsis thaliana chromosome I BAC T5A14, complete sequence
          Length = 87967

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                      
Query: 417   acctttgtgggatcaataataccagcagccatcaaatcctc 457
             |||||||| ||||| || || || |||||||||||||||||
Sbjct: 54892 acctttgttggatcgatgattcctgcagccatcaaatcctc 54852
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>dbj|AK118623.2| Arabidopsis thaliana At3g13470 mRNA for putative chaperonin 60
           beta, complete cds, clone: RAFL19-88-M03
          Length = 471

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 51/61 (83%)
 Strand = Plus / Minus

                                                                       
Query: 390 gcggcatgctccaagcagcacctcacaacctttgtgggatcaataataccagcagccatc 449
           |||||||| || ||||| || |||||||||||||| || || || || || |||||||||
Sbjct: 185 gcggcatgttctaagcaacatctcacaacctttgtcgggtcgatgatgcctgcagccatc 126

            
Query: 450 a 450
           |
Sbjct: 125 a 125
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>gb|AF085694.1|AF085694 Candida albicans heat shock protein 60 (HSP60) gene, complete cds
          Length = 2436

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 426  ggatcaataataccagcagccatca 450
            |||||||||||||||||||| ||||
Sbjct: 2042 ggatcaataataccagcagcaatca 2018
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>gb|BC068415.1| Danio rerio heat shock 60kD protein 1 (chaperonin), mRNA (cDNA clone
            MGC:85875 IMAGE:6966920), complete cds
          Length = 2739

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 410  cctcacaacctttgtgggatcaat 433
            |||||| |||||||||||||||||
Sbjct: 1628 cctcaccacctttgtgggatcaat 1605
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>gb|BC044557.1| Danio rerio heat shock 60kD protein 1 (chaperonin), mRNA (cDNA clone
            MGC:55967 IMAGE:3819432), complete cds
          Length = 2253

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 410  cctcacaacctttgtgggatcaat 433
            |||||| |||||||||||||||||
Sbjct: 1657 cctcaccacctttgtgggatcaat 1634
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>ref|NM_181330.3| Danio rerio heat shock 60kD protein 1 (chaperonin) (hspd1), mRNA
          Length = 2739

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 410  cctcacaacctttgtgggatcaat 433
            |||||| |||||||||||||||||
Sbjct: 1628 cctcaccacctttgtgggatcaat 1605
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>ref|NM_080186.2| Drosophila melanogaster Heat shock protein 60 related CG2830-RA
            (Hsp60B), mRNA
          Length = 2155

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 417  acctttgtgggatcaataat 436
            ||||||||||||||||||||
Sbjct: 1652 acctttgtgggatcaataat 1633
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>gb|AY047544.1| Drosophila melanogaster GH05807 full length cDNA
          Length = 2145

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 417  acctttgtgggatcaataat 436
            ||||||||||||||||||||
Sbjct: 1652 acctttgtgggatcaataat 1633
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>gb|AC092235.1|AC092235 Drosophila melanogaster, chromosome 2L, region 21E-21F, BAC clone
             BACR30G21, complete sequence
          Length = 168370

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 417   acctttgtgggatcaataat 436
             ||||||||||||||||||||
Sbjct: 81084 acctttgtgggatcaataat 81065
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>dbj|AB048353.1| Paramecium caudatum mRNA for hsp60, partial cds
          Length = 1698

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 417  acctttgtgggatcaataataccagcag 444
            |||||||| || ||||||||||||||||
Sbjct: 1553 acctttgttgggtcaataataccagcag 1526
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>emb|BX649398.4| Zebrafish DNA sequence from clone DKEY-202B22 in linkage group 4,
             complete sequence
          Length = 166156

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 436   taccagcagccatcaaatcc 455
             ||||||||||||||||||||
Sbjct: 52160 taccagcagccatcaaatcc 52141
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>gb|AE003588.3| Drosophila melanogaster chromosome 2L, section 3 of 83 of the complete
              sequence
          Length = 308447

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 417    acctttgtgggatcaataat 436
              ||||||||||||||||||||
Sbjct: 118207 acctttgtgggatcaataat 118188
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>gb|BT001426.1| Drosophila melanogaster GH15356 full insert cDNA
          Length = 3351

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 417  acctttgtgggatcaataat 436
            ||||||||||||||||||||
Sbjct: 1630 acctttgtgggatcaataat 1611
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>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome
          Length = 4829781

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 341     gatgtccaccacgacggcgt 360
               ||||||||||||||||||||
Sbjct: 4505680 gatgtccaccacgacggcgt 4505699
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>gb|AC004116.1|AC004116 Drosophila melanogaster (P1 DS07981 (D155)) DNA sequence, complete
            sequence
          Length = 13462

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 417  acctttgtgggatcaataat 436
            ||||||||||||||||||||
Sbjct: 6562 acctttgtgggatcaataat 6543
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>emb|AL928696.6| Mouse DNA sequence from clone RP23-387G11 on chromosome 2, complete
             sequence
          Length = 102448

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 40    tacaatacagtgttgacttt 59
             ||||||||||||||||||||
Sbjct: 89142 tacaatacagtgttgacttt 89161
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>gb|DQ248868.1| Corynebacterium glutamicum glyceraldehyde 3-phosphate dehydrogenase B
            (gapB) gene, complete cds
          Length = 2043

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 343  tgtccaccacgacggcgtca 362
            ||||||||||||||||||||
Sbjct: 1056 tgtccaccacgacggcgtca 1037


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,621,388
Number of Sequences: 3902068
Number of extensions: 3621388
Number of successful extensions: 60265
Number of sequences better than 10.0: 52
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 60143
Number of HSP's gapped (non-prelim): 122
length of query: 457
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 435
effective length of database: 17,147,199,772
effective search space: 7459031900820
effective search space used: 7459031900820
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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