ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags25i08 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_506681.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1399_H05.37 mRNA Length = 1621 Score = 73.8 bits (37), Expect = 4e-10 Identities = 94/113 (83%) Strand = Plus / Minus Query: 295 agctcgcaaggtgggcgtgtgagcttgtccgacagcctgccgaccatcacccactccttg 354 ||||| ||||| || | ||| |||||||| |||||||| || | ||| | ||||||||| Sbjct: 1202 agctcacaaggaggccttgtaagcttgtcagacagcctaccaagcatgatccactccttc 1143 Query: 355 gtctcgttaatccacatcatcagctttgtgccgagggactggtcaagcatgta 407 ||||| || |||||||||||||||||||||||| ||||| || |||||||| Sbjct: 1142 gtctccttctgccacatcatcagctttgtgccgagcgactgctccagcatgta 1090 Score = 42.1 bits (21), Expect = 1.4 Identities = 42/49 (85%) Strand = Plus / Minus Query: 127 cttcagatggtgatcaccctgcacttctccggcgggaagtcatgctcca 175 ||||||||| |||| |||| ||| |||| || |||||||||||||||| Sbjct: 1367 cttcagatgctgataacccggcatctctcaggtgggaagtcatgctcca 1319
>ref|XM_463862.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1585 Score = 73.8 bits (37), Expect = 4e-10 Identities = 94/113 (83%) Strand = Plus / Minus Query: 295 agctcgcaaggtgggcgtgtgagcttgtccgacagcctgccgaccatcacccactccttg 354 ||||| ||||| || | ||| |||||||| |||||||| || | ||| | ||||||||| Sbjct: 1107 agctcacaaggaggccttgtaagcttgtcagacagcctaccaagcatgatccactccttc 1048 Query: 355 gtctcgttaatccacatcatcagctttgtgccgagggactggtcaagcatgta 407 ||||| || |||||||||||||||||||||||| ||||| || |||||||| Sbjct: 1047 gtctccttctgccacatcatcagctttgtgccgagcgactgctccagcatgta 995 Score = 42.1 bits (21), Expect = 1.4 Identities = 42/49 (85%) Strand = Plus / Minus Query: 127 cttcagatggtgatcaccctgcacttctccggcgggaagtcatgctcca 175 ||||||||| |||| |||| ||| |||| || |||||||||||||||| Sbjct: 1272 cttcagatgctgataacccggcatctctcaggtgggaagtcatgctcca 1224
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 73.8 bits (37), Expect = 4e-10 Identities = 94/113 (83%) Strand = Plus / Plus Query: 295 agctcgcaaggtgggcgtgtgagcttgtccgacagcctgccgaccatcacccactccttg 354 ||||| ||||| || | ||| |||||||| |||||||| || | ||| | ||||||||| Sbjct: 781147 agctcacaaggaggccttgtaagcttgtcagacagcctaccaagcatgatccactccttc 781206 Query: 355 gtctcgttaatccacatcatcagctttgtgccgagggactggtcaagcatgta 407 ||||| || |||||||||||||||||||||||| ||||| || |||||||| Sbjct: 781207 gtctccttctgccacatcatcagctttgtgccgagcgactgctccagcatgta 781259 Score = 42.1 bits (21), Expect = 1.4 Identities = 42/49 (85%) Strand = Plus / Plus Query: 127 cttcagatggtgatcaccctgcacttctccggcgggaagtcatgctcca 175 ||||||||| |||| |||| ||| |||| || |||||||||||||||| Sbjct: 780982 cttcagatgctgataacccggcatctctcaggtgggaagtcatgctcca 781030
>dbj|AP004867.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0036E06 Length = 137926 Score = 73.8 bits (37), Expect = 4e-10 Identities = 94/113 (83%) Strand = Plus / Plus Query: 295 agctcgcaaggtgggcgtgtgagcttgtccgacagcctgccgaccatcacccactccttg 354 ||||| ||||| || | ||| |||||||| |||||||| || | ||| | ||||||||| Sbjct: 59278 agctcacaaggaggccttgtaagcttgtcagacagcctaccaagcatgatccactccttc 59337 Query: 355 gtctcgttaatccacatcatcagctttgtgccgagggactggtcaagcatgta 407 ||||| || |||||||||||||||||||||||| ||||| || |||||||| Sbjct: 59338 gtctccttctgccacatcatcagctttgtgccgagcgactgctccagcatgta 59390 Score = 42.1 bits (21), Expect = 1.4 Identities = 42/49 (85%) Strand = Plus / Plus Query: 127 cttcagatggtgatcaccctgcacttctccggcgggaagtcatgctcca 175 ||||||||| |||| |||| ||| |||| || |||||||||||||||| Sbjct: 59113 cttcagatgctgataacccggcatctctcaggtgggaagtcatgctcca 59161
>dbj|AP004090.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1399_H05 Length = 147670 Score = 73.8 bits (37), Expect = 4e-10 Identities = 94/113 (83%) Strand = Plus / Plus Query: 295 agctcgcaaggtgggcgtgtgagcttgtccgacagcctgccgaccatcacccactccttg 354 ||||| ||||| || | ||| |||||||| |||||||| || | ||| | ||||||||| Sbjct: 138042 agctcacaaggaggccttgtaagcttgtcagacagcctaccaagcatgatccactccttc 138101 Query: 355 gtctcgttaatccacatcatcagctttgtgccgagggactggtcaagcatgta 407 ||||| || |||||||||||||||||||||||| ||||| || |||||||| Sbjct: 138102 gtctccttctgccacatcatcagctttgtgccgagcgactgctccagcatgta 138154 Score = 42.1 bits (21), Expect = 1.4 Identities = 42/49 (85%) Strand = Plus / Plus Query: 127 cttcagatggtgatcaccctgcacttctccggcgggaagtcatgctcca 175 ||||||||| |||| |||| ||| |||| || |||||||||||||||| Sbjct: 137877 cttcagatgctgataacccggcatctctcaggtgggaagtcatgctcca 137925
>dbj|AK073957.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033076O03, full insert sequence Length = 1621 Score = 73.8 bits (37), Expect = 4e-10 Identities = 94/113 (83%) Strand = Plus / Minus Query: 295 agctcgcaaggtgggcgtgtgagcttgtccgacagcctgccgaccatcacccactccttg 354 ||||| ||||| || | ||| |||||||| |||||||| || | ||| | ||||||||| Sbjct: 1202 agctcacaaggaggccttgtaagcttgtcagacagcctaccaagcatgatccactccttc 1143 Query: 355 gtctcgttaatccacatcatcagctttgtgccgagggactggtcaagcatgta 407 ||||| || |||||||||||||||||||||||| ||||| || |||||||| Sbjct: 1142 gtctccttctgccacatcatcagctttgtgccgagcgactgctccagcatgta 1090 Score = 42.1 bits (21), Expect = 1.4 Identities = 42/49 (85%) Strand = Plus / Minus Query: 127 cttcagatggtgatcaccctgcacttctccggcgggaagtcatgctcca 175 ||||||||| |||| |||| ||| |||| || |||||||||||||||| Sbjct: 1367 cttcagatgctgataacccggcatctctcaggtgggaagtcatgctcca 1319
>dbj|AK062579.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-047-H08, full insert sequence Length = 1594 Score = 73.8 bits (37), Expect = 4e-10 Identities = 94/113 (83%) Strand = Plus / Minus Query: 295 agctcgcaaggtgggcgtgtgagcttgtccgacagcctgccgaccatcacccactccttg 354 ||||| ||||| || | ||| |||||||| |||||||| || | ||| | ||||||||| Sbjct: 1116 agctcacaaggaggccttgtaagcttgtcagacagcctaccaagcatgatccactccttc 1057 Query: 355 gtctcgttaatccacatcatcagctttgtgccgagggactggtcaagcatgta 407 ||||| || |||||||||||||||||||||||| ||||| || |||||||| Sbjct: 1056 gtctccttctgccacatcatcagctttgtgccgagcgactgctccagcatgta 1004 Score = 42.1 bits (21), Expect = 1.4 Identities = 42/49 (85%) Strand = Plus / Minus Query: 127 cttcagatggtgatcaccctgcacttctccggcgggaagtcatgctcca 175 ||||||||| |||| |||| ||| |||| || |||||||||||||||| Sbjct: 1281 cttcagatgctgataacccggcatctctcaggtgggaagtcatgctcca 1233
>ref|XM_754622.1| Ustilago maydis 521 hypothetical protein (UM03568.1) partial mRNA Length = 3561 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 288 ggcaacaagctcgcaaggtgg 308 ||||||||||||||||||||| Sbjct: 429 ggcaacaagctcgcaaggtgg 449
>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome Length = 4967148 Score = 42.1 bits (21), Expect = 1.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 221 ccgccgtgtccatgtngatggtca 244 ||||||||||||||| |||||||| Sbjct: 1468074 ccgccgtgtccatgttgatggtca 1468051
>gb|AC132485.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0022D06, complete sequence Length = 142068 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 59 atatacagccagaataaaagaaaa 82 ||||||||||||||||||| |||| Sbjct: 74518 atatacagccagaataaaaaaaaa 74495
>emb|BX571818.3| Human DNA sequence from clone RP11-38J22 on chromosome 1 Contains a novel gene, a ribosomal protein L22 (RPL22) pseudogene, a novel gene, the AVPR1B gene for arginine vasopressin receptor 1B, two novel genes, the CTSE gene for cathepsin E and two CpG islands, complete sequence Length = 170924 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 363 aatccacatcatcagctttg 382 |||||||||||||||||||| Sbjct: 112489 aatccacatcatcagctttg 112508
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 59 atatacagccagaataaaagaaaa 82 ||||||||||||||||||| |||| Sbjct: 25339914 atatacagccagaataaaaaaaaa 25339891
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 183 cgccgtcgacgaggacacca 202 |||||||||||||||||||| Sbjct: 4726974 cgccgtcgacgaggacacca 4726993
>emb|AL808117.6| Mouse DNA sequence from clone RP23-240N3 on chromosome 2, complete sequence Length = 245266 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 363 aatccacatcatcagctttgtgcc 386 |||||| ||||||||||||||||| Sbjct: 109813 aatccaaatcatcagctttgtgcc 109836 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,139,182 Number of Sequences: 3902068 Number of extensions: 3139182 Number of successful extensions: 62009 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 14 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 61784 Number of HSP's gapped (non-prelim): 225 length of query: 407 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 385 effective length of database: 17,147,199,772 effective search space: 6601671912220 effective search space used: 6601671912220 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
