ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags25h09 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY587552.1| Hordeum vulgare subsp. vulgare GAMYB-binding protein mRNA, complete cds Length = 2275 Score = 410 bits (207), Expect = e-112 Identities = 235/243 (96%), Gaps = 3/243 (1%) Strand = Plus / Minus Query: 14 ccaccacccaaacaccaaatttacagccgaggcatcttgactgacaagcacagaacataa 73 ||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct: 409 ccacctcccaaacaccaaatttacagccaaggcatcttgactgacaagcacagaacataa 350 Query: 74 aattccactagtggaaactaacgccaaccgctaggcngatccatccatcaggcctctact 133 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 349 aattccactagtggaaactaacgccaaccgctaggcagatccatccatcaggcctctact 290 Query: 134 tcttggccttcttcgccgngggcttcttggccggcgcagccttcttcaccggggtcgccc 193 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct: 289 tcttggccttcttcgccgcgggcttcttggccggcgcagccttcttcaccggggtcgccc 230 Query: 194 gcttggtgggcgccttcctggcgacaggcttcttgggggtatgcggcgnccggcgccttc 253 ||||||||||||||||||||||| ||||||||||||||| ||||||| ||||||||||| Sbjct: 229 gcttggtgggcgccttcctggcg--aggcttcttgggggt-tgcggcggccggcgccttc 173 Query: 254 ttg 256 ||| Sbjct: 172 ttg 170
>emb|X59872.2|TAHISTH1 T.aestivum L mRNA for histone H1 Length = 1031 Score = 167 bits (84), Expect = 2e-38 Identities = 119/130 (91%), Gaps = 1/130 (0%) Strand = Plus / Minus Query: 127 ctctacttcttggccttcttcgccgngggcttcttggccggcgcagccttcttcaccggg 186 |||||||||||||||||||| |||| |||||||||||||||||| ||||||||||||||| Sbjct: 785 ctctacttcttggccttcttggccgcgggcttcttggccggcgcggccttcttcaccggg 726 Query: 187 gtcgcccgcttggtgggcgccttcctggcgacaggcttcttgggggtatgcggcgnccgg 246 ||||||||||||||||||| ||||| |||| | |||||||| ||||| |||||| |||| Sbjct: 725 gtcgcccgcttggtgggcggcttccgggcggcgggcttcttcggggt-cgcggcggccgg 667 Query: 247 cgccttcttg 256 |||||||||| Sbjct: 666 cgccttcttg 657
>gb|AF107022.1|AF107022 Triticum aestivum histone H1 WH1A.1 mRNA, complete cds Length = 1050 Score = 167 bits (84), Expect = 2e-38 Identities = 119/130 (91%), Gaps = 1/130 (0%) Strand = Plus / Minus Query: 127 ctctacttcttggccttcttcgccgngggcttcttggccggcgcagccttcttcaccggg 186 |||||||||||||||||||| |||| |||||||||||||||||| ||||||||||||||| Sbjct: 759 ctctacttcttggccttcttggccgcgggcttcttggccggcgcggccttcttcaccggg 700 Query: 187 gtcgcccgcttggtgggcgccttcctggcgacaggcttcttgggggtatgcggcgnccgg 246 ||||||||||||||||||| ||||| |||| | |||||||| ||||| |||||| |||| Sbjct: 699 gtcgcccgcttggtgggcggcttccgggcggcgggcttcttcggggt-cgcggcggccgg 641 Query: 247 cgccttcttg 256 |||||||||| Sbjct: 640 cgccttcttg 631
>gb|AF107023.1|AF107023 Triticum aestivum histone H1 WH1A.2 mRNA, complete cds Length = 1019 Score = 141 bits (71), Expect = 1e-30 Identities = 100/110 (90%) Strand = Plus / Minus Query: 124 ggcctctacttcttggccttcttcgccgngggcttcttggccggcgcagccttcttcacc 183 ||||||||||||||||||||||| |||| ||||||||||||||| || |||||||||||| Sbjct: 754 ggcctctacttcttggccttcttggccgcgggcttcttggccggagcggccttcttcacc 695 Query: 184 ggggtcgcccgcttggtgggcgccttcctggcgacaggcttcttgggggt 233 || ||||||| ||||||||||| ||||| ||| ||||||||||| ||||| Sbjct: 694 ggcgtcgccctcttggtgggcggcttccgggcaacaggcttcttcggggt 645
>gb|AF107027.1|AF107027 Triticum aestivum histone H1 WH1A.4 mRNA, complete cds Length = 975 Score = 121 bits (61), Expect = 1e-24 Identities = 116/133 (87%), Gaps = 4/133 (3%) Strand = Plus / Minus Query: 127 ctctacttcttggccttcttcgccgngggcttcttggccggcgcagccttcttcaccggg 186 |||||||||||||||||||| |||| |||||||||||| || || |||||||||||||| Sbjct: 745 ctctacttcttggccttcttggccgcgggcttcttggcgggggccgccttcttcaccggc 686 Query: 187 gtcgcccgcttggtgggcgccttcc---tggcgacaggcttcttgggggtatgcggcgnc 243 ||||| ||||||||||||| ||||| |||| | |||||||||||||| |||||| | Sbjct: 685 gtcgcgcgcttggtgggcggcttccgggcggcggcgggcttcttgggggt-cgcggcggc 627 Query: 244 cggcgccttcttg 256 ||||||||||||| Sbjct: 626 cggcgccttcttg 614
>gb|AF107026.1|AF107026 Triticum aestivum histone H1 WH1A.3 mRNA, partial cds Length = 952 Score = 121 bits (61), Expect = 1e-24 Identities = 116/133 (87%), Gaps = 4/133 (3%) Strand = Plus / Minus Query: 127 ctctacttcttggccttcttcgccgngggcttcttggccggcgcagccttcttcaccggg 186 |||||||||||||||||||| |||| |||||||||||| || || |||||||||||||| Sbjct: 687 ctctacttcttggccttcttggccgcgggcttcttggcgggggccgccttcttcaccggc 628 Query: 187 gtcgcccgcttggtgggcgccttcc---tggcgacaggcttcttgggggtatgcggcgnc 243 ||||| ||||||||||||| ||||| |||| | |||||||||||||| |||||| | Sbjct: 627 gtcgcgcgcttggtgggcggcttccgggcggcggcgggcttcttgggggt-cgcggcggc 569 Query: 244 cggcgccttcttg 256 ||||||||||||| Sbjct: 568 cggcgccttcttg 556
>gb|AF107025.1|AF107025 Triticum aestivum similar to histone H1 mRNA sequence Length = 1082 Score = 103 bits (52), Expect = 3e-19 Identities = 93/107 (86%) Strand = Plus / Minus Query: 127 ctctacttcttggccttcttcgccgngggcttcttggccggcgcagccttcttcaccggg 186 |||||||||||||||||||| || | || ||||||||| ||||| |||||||||||||| Sbjct: 753 ctctacttcttggccttcttggcgggggtcttcttggcgggcgcggccttcttcaccggc 694 Query: 187 gtcgcccgcttggtgggcgccttcctggcgacaggcttcttgggggt 233 | || |||||||||||||| |||||||| | | | |||||||||||| Sbjct: 693 gccgaccgcttggtgggcggcttcctgggggcggccttcttgggggt 647 Score = 40.1 bits (20), Expect = 3.3 Identities = 22/23 (95%) Strand = Plus / Minus Query: 139 gccttcttcgccgngggcttctt 161 ||||||||||||| ||||||||| Sbjct: 357 gccttcttcgccgcgggcttctt 335
>dbj|D87065.1| Triticum aestivum gene for histone H1, complete cds, clone:TH325 Length = 2541 Score = 95.6 bits (48), Expect = 6e-17 Identities = 92/107 (85%) Strand = Plus / Minus Query: 127 ctctacttcttggccttcttcgccgngggcttcttggccggcgcagccttcttcaccggg 186 |||||||||||||||||||| || | || ||||||||| |||| |||||||||||||| Sbjct: 1845 ctctacttcttggccttcttggcgggggccttcttggcgggcgtggccttcttcaccggc 1786 Query: 187 gtcgcccgcttggtgggcgccttcctggcgacaggcttcttgggggt 233 | || |||||||||||||| |||||||| | | | |||||||||||| Sbjct: 1785 gccgaccgcttggtgggcggcttcctgggggcggccttcttgggggt 1739
>dbj|D87064.1| Triticum aestivum gene for histone H1, complete cds, clone:TH315 Length = 3025 Score = 95.6 bits (48), Expect = 6e-17 Identities = 92/107 (85%) Strand = Plus / Minus Query: 127 ctctacttcttggccttcttcgccgngggcttcttggccggcgcagccttcttcaccggg 186 |||||||||||||||||||| || | || ||||||||| |||| |||||||||||||| Sbjct: 1834 ctctacttcttggccttcttggcgggggccttcttggcgggcgtggccttcttcaccggc 1775 Query: 187 gtcgcccgcttggtgggcgccttcctggcgacaggcttcttgggggt 233 | || |||||||||||||| |||||||| | | | |||||||||||| Sbjct: 1774 gccgaccgcttggtgggcggcttcctgggggcggccttcttgggggt 1728
>gb|AF107024.1|AF107024 Triticum aestivum histone H1 WH1B.1 mRNA, complete cds Length = 1114 Score = 69.9 bits (35), Expect = 4e-09 Identities = 65/75 (86%) Strand = Plus / Minus Query: 156 cttcttggccggcgcagccttcttcaccggggtcgcccgcttggtgggcgccttcctggc 215 ||||||||| ||||| |||||||||||||| || | | ||||||||||| ||||||||| Sbjct: 784 cttcttggcgggcgcggccttcttcaccggcgtggatctcttggtgggcggcttcctggc 725 Query: 216 gacaggcttcttggg 230 | | ||||||||||| Sbjct: 724 ggcgggcttcttggg 710 Score = 44.1 bits (22), Expect = 0.21 Identities = 47/55 (85%), Gaps = 3/55 (5%) Strand = Plus / Minus Query: 128 tctacttcttggccttcttcgccgnggg---cttcttggccggcgcagccttctt 179 ||||||||||||||||||| || | ||| |||||| |||||||| |||||||| Sbjct: 833 tctacttcttggccttcttggcggcgggggccttcttcgccggcgcggccttctt 779
>gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence Length = 3694126 Score = 46.1 bits (23), Expect = 0.054 Identities = 37/42 (88%) Strand = Plus / Minus Query: 139 gccttcttcgccgngggcttcttggccggcgcagccttcttc 180 ||||||||||| | | ||||||||| ||||||||||||||| Sbjct: 570251 gccttcttcgcggcagccttcttggcaggcgcagccttcttc 570210 Score = 40.1 bits (20), Expect = 3.3 Identities = 37/43 (86%) Strand = Plus / Minus Query: 138 ggccttcttcgccgngggcttcttggccggcgcagccttcttc 180 |||||||||||| | | |||||||||||| || ||||||||| Sbjct: 570186 ggccttcttcgcagcagccttcttggccggtgcggccttcttc 570144
>emb|AL590464.1|SCO590464 Streptomyces coelicolor plasmid SCP1; segment 2/2 Length = 178073 Score = 46.1 bits (23), Expect = 0.054 Identities = 28/30 (93%) Strand = Plus / Plus Query: 139 gccttcttcgccgngggcttcttggccggc 168 ||||||||||||| || ||||||||||||| Sbjct: 109650 gccttcttcgccgtggccttcttggccggc 109679
>emb|AL590463.1|SCO590463 Streptomyces coelicolor plasmid SCP1; segment 1/2 Length = 178000 Score = 46.1 bits (23), Expect = 0.054 Identities = 28/30 (93%) Strand = Plus / Minus Query: 139 gccttcttcgccgngggcttcttggccggc 168 ||||||||||||| || ||||||||||||| Sbjct: 68424 gccttcttcgccgtggccttcttggccggc 68395
>gb|AC165960.4| Mus musculus BAC clone RP23-395M20 from chromosome 17, complete sequence Length = 192675 Score = 44.1 bits (22), Expect = 0.21 Identities = 22/22 (100%) Strand = Plus / Plus Query: 55 tgacaagcacagaacataaaat 76 |||||||||||||||||||||| Sbjct: 133137 tgacaagcacagaacataaaat 133158
>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence Length = 3510148 Score = 42.1 bits (21), Expect = 0.84 Identities = 35/40 (87%) Strand = Plus / Plus Query: 140 ccttcttcgccgngggcttcttggccggcgcagccttctt 179 |||||||| ||| | |||||||||||| ||||||||||| Sbjct: 2610925 ccttcttcaccgctgccttcttggccggtgcagccttctt 2610964 Score = 40.1 bits (20), Expect = 3.3 Identities = 37/43 (86%) Strand = Plus / Plus Query: 138 ggccttcttcgccgngggcttcttggccggcgcagccttcttc 180 |||||||||||| | | |||||| |||||||| ||||||||| Sbjct: 2610779 ggccttcttcgcggcagccttcttcgccggcgcggccttcttc 2610821 Score = 40.1 bits (20), Expect = 3.3 Identities = 37/43 (86%) Strand = Plus / Plus Query: 138 ggccttcttcgccgngggcttcttggccggcgcagccttcttc 180 |||||||||||| | | |||||| |||||||| ||||||||| Sbjct: 2610746 ggccttcttcgcagcagccttcttcgccggcgcggccttcttc 2610788
>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence Length = 4126292 Score = 42.1 bits (21), Expect = 0.84 Identities = 35/40 (87%) Strand = Plus / Plus Query: 140 ccttcttcgccgngggcttcttggccggcgcagccttctt 179 |||||||| ||| | |||||||||||| ||||||||||| Sbjct: 3823263 ccttcttcaccgctgccttcttggccggtgcagccttctt 3823302 Score = 40.1 bits (20), Expect = 3.3 Identities = 37/43 (86%) Strand = Plus / Plus Query: 138 ggccttcttcgccgngggcttcttggccggcgcagccttcttc 180 |||||||||||| | | |||||| |||||||| ||||||||| Sbjct: 3822952 ggccttcttcgcagcagccttcttcgccggcgcggccttcttc 3822994
>gb|AC132619.3| Mus musculus BAC clone RP23-195N4 from chromosome 7, complete sequence Length = 193890 Score = 42.1 bits (21), Expect = 0.84 Identities = 21/21 (100%) Strand = Plus / Minus Query: 13 accaccacccaaacaccaaat 33 ||||||||||||||||||||| Sbjct: 68079 accaccacccaaacaccaaat 68059
>gb|AF527803.1| Homo sapiens cyclin-dependent kinase inhibitor 2A (CDKN2A) gene, complete cds, alternatively spliced Length = 28770 Score = 42.1 bits (21), Expect = 0.84 Identities = 21/21 (100%) Strand = Plus / Plus Query: 9 gcataccaccacccaaacacc 29 ||||||||||||||||||||| Sbjct: 24154 gcataccaccacccaaacacc 24174
>emb|AL449423.14| Human DNA sequence from clone RP11-149I2 on chromosome 9 Contains the CDKN2A gene for cyclin-dependent kinase inhibitor 2A (melanoma, p16, inhibits CDK4), the gene for susceptibility protein NSG-x (LOC51198), the 5' end of a variant of the MTAP gene for methylthioadenosine phosphorylase (MSAP), the 3' end of the CDKN2B gene for cyclin-dependent kinase inhibitor 2B (p15, inhibits CDK4) and 4 CpG islands, complete sequence Length = 101155 Score = 42.1 bits (21), Expect = 0.84 Identities = 21/21 (100%) Strand = Plus / Minus Query: 9 gcataccaccacccaaacacc 29 ||||||||||||||||||||| Sbjct: 61401 gcataccaccacccaaacacc 61381
>gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete sequence Length = 3806533 Score = 42.1 bits (21), Expect = 0.84 Identities = 35/40 (87%) Strand = Plus / Plus Query: 140 ccttcttcgccgngggcttcttggccggcgcagccttctt 179 |||||||| | | || ||||||||||||||| |||||||| Sbjct: 3145961 ccttcttcactgcggccttcttggccggcgctgccttctt 3146000 Score = 40.1 bits (20), Expect = 3.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 156 cttcttggccggcgcagccttctt 179 |||||||||||| ||||||||||| Sbjct: 3145800 cttcttggccggtgcagccttctt 3145823
>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence Length = 4074542 Score = 42.1 bits (21), Expect = 0.84 Identities = 35/40 (87%) Strand = Plus / Plus Query: 140 ccttcttcgccgngggcttcttggccggcgcagccttctt 179 |||||||| ||| | |||||||||||| ||||||||||| Sbjct: 3563610 ccttcttcaccgctgccttcttggccggtgcagccttctt 3563649 Score = 40.1 bits (20), Expect = 3.3 Identities = 37/43 (86%) Strand = Plus / Plus Query: 138 ggccttcttcgccgngggcttcttggccggcgcagccttcttc 180 |||||||||||| | | |||||| |||||||| ||||||||| Sbjct: 3563299 ggccttcttcgcggcagccttcttcgccggcgcggccttcttc 3563341
>gb|AE005803.1| Caulobacter crescentus CB15 section 129 of 359 of the complete genome Length = 10483 Score = 42.1 bits (21), Expect = 0.84 Identities = 21/21 (100%) Strand = Plus / Minus Query: 162 ggccggcgcagccttcttcac 182 ||||||||||||||||||||| Sbjct: 2866 ggccggcgcagccttcttcac 2846
>gb|AC000048.4| Homo sapiens Chromosome 9p21 Cosmid Clone c66, complete sequence Length = 34669 Score = 42.1 bits (21), Expect = 0.84 Identities = 21/21 (100%) Strand = Plus / Minus Query: 9 gcataccaccacccaaacacc 29 ||||||||||||||||||||| Sbjct: 24574 gcataccaccacccaaacacc 24554
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 42.1 bits (21), Expect = 0.84 Identities = 26/28 (92%) Strand = Plus / Plus Query: 139 gccttcttcgccgngggcttcttggccg 166 ||||||||||||| || ||||||||||| Sbjct: 3289728 gccttcttcgccggggccttcttggccg 3289755 Score = 40.1 bits (20), Expect = 3.3 Identities = 28/31 (90%) Strand = Plus / Plus Query: 140 ccttcttcgccgngggcttcttggccggcgc 170 |||||||||| | || ||||||||||||||| Sbjct: 2310493 ccttcttcgcggcggtcttcttggccggcgc 2310523 Score = 40.1 bits (20), Expect = 3.3 Identities = 31/35 (88%) Strand = Plus / Plus Query: 132 cttcttggccttcttcgccgngggcttcttggccg 166 |||| ||||||||||||||| | ||||||||||| Sbjct: 23519 cttcgtggccttcttcgccgtcgtcttcttggccg 23553
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 42.1 bits (21), Expect = 0.84 Identities = 21/21 (100%) Strand = Plus / Plus Query: 209 tcctggcgacaggcttcttgg 229 ||||||||||||||||||||| Sbjct: 1615906 tcctggcgacaggcttcttgg 1615926
>emb|AJ330315.1|HSA330315 Homo sapiens genomic sequence surrounding NotI site, clone HSJ6P-G4RS Length = 749 Score = 42.1 bits (21), Expect = 0.84 Identities = 24/25 (96%) Strand = Plus / Minus Query: 156 cttcttggccggcgcagccttcttc 180 ||||||||||||||| ||||||||| Sbjct: 305 cttcttggccggcgctgccttcttc 281
>gb|L07947.1|VVCH1IIA Volvox carteri nagariensi histone (H1-II) gene, complete cds Length = 2140 Score = 42.1 bits (21), Expect = 0.84 Identities = 23/24 (95%) Strand = Plus / Minus Query: 141 cttcttcgccgngggcttcttggc 164 ||||||||||| |||||||||||| Sbjct: 1677 cttcttcgccgcgggcttcttggc 1654
>gb|M90411.1|STMHRDB Streptomyces aureofaciens principal sigma- like factor (hrdB) gene, complete cds Length = 2332 Score = 42.1 bits (21), Expect = 0.84 Identities = 35/40 (87%) Strand = Plus / Minus Query: 141 cttcttcgccgngggcttcttggccggcgcagccttcttc 180 ||||||||||| || ||||||||| || || ||||||||| Sbjct: 822 cttcttcgccgcggtcttcttggcgggagcggccttcttc 783
>dbj|AB060808.1| Homo sapiens gene for p16/CDKN2A, complete cds Length = 250000 Score = 42.1 bits (21), Expect = 0.84 Identities = 21/21 (100%) Strand = Plus / Minus Query: 9 gcataccaccacccaaacacc 29 ||||||||||||||||||||| Sbjct: 188048 gcataccaccacccaaacacc 188028
>gb|AE016827.1| Mannheimia succiniciproducens MBEL55E, complete genome Length = 2314078 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 172 gccttcttcaccggggtcgc 191 |||||||||||||||||||| Sbjct: 1935281 gccttcttcaccggggtcgc 1935262
>gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome Length = 4403837 Score = 40.1 bits (20), Expect = 3.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 156 cttcttggccggcgcagccttctt 179 |||||||||||| ||||||||||| Sbjct: 567748 cttcttggccggagcagccttctt 567725
>gb|AC160398.8| Mus musculus 6 BAC RP23-162K3 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 215426 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 19 acccaaacaccaaatttaca 38 |||||||||||||||||||| Sbjct: 12620 acccaaacaccaaatttaca 12601
>emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete genome Length = 5178466 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 153 gggcttcttggccggcgcag 172 |||||||||||||||||||| Sbjct: 292127 gggcttcttggccggcgcag 292146
>gb|AC100383.12| Mus musculus chromosome 6, clone RP23-132E3, complete sequence Length = 241050 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 66 gaacataaaattccactagt 85 |||||||||||||||||||| Sbjct: 123122 gaacataaaattccactagt 123141
>gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, complete sequence Length = 4895836 Score = 40.1 bits (20), Expect = 3.3 Identities = 34/39 (87%) Strand = Plus / Plus Query: 138 ggccttcttcgccgngggcttcttggccggcgcagcctt 176 |||||||||||| | | ||||||||| ||||||||||| Sbjct: 4301513 ggccttcttcgcggcagccttcttggcaggcgcagcctt 4301551
>gb|CP000092.1| Ralstonia eutropha JMP134 megaplasmid, complete sequence Length = 634917 Score = 40.1 bits (20), Expect = 3.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 156 cttcttggccggcgcagccttctt 179 ||||||||||||||| |||||||| Sbjct: 119323 cttcttggccggcgcggccttctt 119346
>gb|CP000091.1| Ralstonia eutropha JMP134 chromosome 2, complete sequence Length = 2726152 Score = 40.1 bits (20), Expect = 3.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 156 cttcttggccggcgcagccttctt 179 ||||||||||||||| |||||||| Sbjct: 692135 cttcttggccggcgcggccttctt 692112
>emb|BX842573.1| Mycobacterium tuberculosis H37Rv complete genome; segment 2/13 Length = 342416 Score = 40.1 bits (20), Expect = 3.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 156 cttcttggccggcgcagccttctt 179 |||||||||||| ||||||||||| Sbjct: 224393 cttcttggccggagcagccttctt 224370
>emb|BX248335.1| Mycobacterium bovis subsp. bovis AF2122/97 complete genome; segment 2/14 Length = 324050 Score = 40.1 bits (20), Expect = 3.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 156 cttcttggccggcgcagccttctt 179 |||||||||||| ||||||||||| Sbjct: 224319 cttcttggccggagcagccttctt 224296
>gb|AE011649.1| Xanthomonas axonopodis pv. citri str. 306, section 27 of 469 of the complete genome Length = 11071 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 153 gggcttcttggccggcgcag 172 |||||||||||||||||||| Sbjct: 4436 gggcttcttggccggcgcag 4455
>gb|AC156400.9| Mus musculus 6 BAC RP24-299B14 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 158629 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 19 acccaaacaccaaatttaca 38 |||||||||||||||||||| Sbjct: 51434 acccaaacaccaaatttaca 51453
>gb|CP000157.1| Erythrobacter litoralis HTCC2594, complete genome Length = 3052398 Score = 40.1 bits (20), Expect = 3.3 Identities = 22/23 (95%) Strand = Plus / Plus Query: 144 cttcgccgngggcttcttggccg 166 |||||||| |||||||||||||| Sbjct: 735863 cttcgccgcgggcttcttggccg 735885
>ref|NM_214555.1| Strongylocentrotus purpuratus late histone H1-gamma (LOC373350), mRNA Length = 654 Score = 40.1 bits (20), Expect = 3.3 Identities = 28/31 (90%) Strand = Plus / Minus Query: 132 cttcttggccttcttcgccgngggcttcttg 162 ||||||||||||||| || | |||||||||| Sbjct: 477 cttcttggccttcttggcggcgggcttcttg 447
>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence Length = 3809201 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 163 gccggcgcagccttcttcac 182 |||||||||||||||||||| Sbjct: 1303878 gccggcgcagccttcttcac 1303859
>gb|AF074390.1|AF074390 Mycobacterium tuberculosis heparin-binding hemagglutinin (hbha) gene, complete cds Length = 1097 Score = 40.1 bits (20), Expect = 3.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 156 cttcttggccggcgcagccttctt 179 |||||||||||| ||||||||||| Sbjct: 834 cttcttggccggagcagccttctt 811
>gb|M16033.1|SUSHISHA1G Sea urchin (S.purpuratus) late histone H1-gamma gene, complete cds Length = 1182 Score = 40.1 bits (20), Expect = 3.3 Identities = 28/31 (90%) Strand = Plus / Minus Query: 132 cttcttggccttcttcgccgngggcttcttg 162 ||||||||||||||| || | |||||||||| Sbjct: 917 cttcttggccttcttggcggcgggcttcttg 887 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,133,607 Number of Sequences: 3902068 Number of extensions: 2133607 Number of successful extensions: 32311 Number of sequences better than 10.0: 46 Number of HSP's better than 10.0 without gapping: 46 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 31993 Number of HSP's gapped (non-prelim): 309 length of query: 256 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 234 effective length of database: 17,147,199,772 effective search space: 4012444746648 effective search space used: 4012444746648 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
