ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags25h06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1UBP7_HUMAN (Q93009) Ubiquitin carboxyl-terminal hydrolase 7 (EC ... 38 0.031
2ERR2_HUMAN (O95718) Steroid hormone receptor ERR2 (Estrogen-rela... 30 8.4

>UBP7_HUMAN (Q93009) Ubiquitin carboxyl-terminal hydrolase 7 (EC 3.1.2.15)|
            (Ubiquitin thioesterase 7) (Ubiquitin-specific-processing
            protease 7) (Deubiquitinating enzyme 7)
            (Herpesvirus-associated ubiquitin-specific protease)
          Length = 1102

 Score = 37.7 bits (86), Expect = 0.031
 Identities = 27/86 (31%), Positives = 42/86 (48%), Gaps = 4/86 (4%)
 Frame = -2

Query: 662  RVQKKLRVPNEEFAKWKAAFISMNRPEYLQDIDAVSARFQRRDVYGAWEQ---YLGLEHT 492
            R+Q  L +  +EF K+K A +   R +Y+ + +            G       +LGL+H 
Sbjct: 1023 RIQSLLDIQEKEFEKFKFAIVMTGRHQYINEDEYEVNLKDFEPQPGNMSHPRPWLGLDHF 1082

Query: 491  DTTPKRSYTANQNRHTY-EKPVKIYN 417
            +  PKRS      R+TY EK +KI+N
Sbjct: 1083 NKAPKRS------RYTYLEKAIKIHN 1102



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>ERR2_HUMAN (O95718) Steroid hormone receptor ERR2 (Estrogen-related receptor,|
           beta) (ERR-beta) (Estrogen receptor-like 2) (ERR beta-2)
          Length = 500

 Score = 29.6 bits (65), Expect = 8.4
 Identities = 14/35 (40%), Positives = 22/35 (62%)
 Frame = -2

Query: 662 RVQKKLRVPNEEFAKWKAAFISMNRPEYLQDIDAV 558
           R  KKL+V  EEF   KA  ++ +   Y++D++AV
Sbjct: 329 RRYKKLKVEKEEFVTLKALALANSDSMYIEDLEAV 363


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 101,428,043
Number of Sequences: 219361
Number of extensions: 2253367
Number of successful extensions: 5089
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 4927
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5088
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6370891296
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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