>MIA40_KLULA (Q6CSA1) Intermembrane space import and assembly protein 40,|
           mitochondrial precursor (Mitochondrial import inner
           membrane translocase TIM40)
          Length = 406

 Score = 35.0 bits (79), Expect = 0.11
 Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
 Frame = -2

Query: 500 CKXEFVGWXKCVEQAEAEGSDVVERCYDATSALRRCMDKFPDYY-EPILRAERAMAE 333
           C  EF     C   +EA+   +   C +  S ++ C  K+PDYY E I   E A AE
Sbjct: 293 CGEEFKSAFSCFVYSEADPKGI--NCVEKFSTMQNCFRKYPDYYAEQIKDEEEASAE 347

>MIA40_XENTR (Q6PBC3) Mitochondrial intermembrane space import and assembly|
           protein 40 (Coiled-coil-helix-coiled-coil-helix
           domain-containing protein 4)
          Length = 139

 Score = 32.0 bits (71), Expect = 0.97
 Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
 Frame = -2

Query: 500 CKXEFVGWXKCVE--QAEAEGSDVVERCYDATSALRRCMDKFPDYY 369
           C  +F     C    Q E +GSD    C D   A++ CM K+PD Y
Sbjct: 64  CGEQFKSAFSCFHYSQEEIKGSD----CLDQFRAMQECMQKYPDIY 105

>MI40B_XENLA (Q63ZK1) Mitochondrial intermembrane space import and assembly|
           protein 40-B (Coiled-coil-helix-coiled-coil-helix
           domain-containing protein 4-B)
          Length = 139

 Score = 30.4 bits (67), Expect = 2.8
 Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
 Frame = -2

Query: 500 CKXEFVGWXKCVE--QAEAEGSDVVERCYDATSALRRCMDKFPDYY 369
           C  +F     C    Q E +GSD    C D   A++ CM K+P+ Y
Sbjct: 64  CGEQFKSAFSCFHYSQEEIKGSD----CLDQFRAMQECMQKYPELY 105

>MI40A_XENLA (Q6NU12) Mitochondrial intermembrane space import and assembly|
           protein 40-A (Coiled-coil-helix-coiled-coil-helix
           domain-containing protein 4-A)
          Length = 139

 Score = 30.4 bits (67), Expect = 2.8
 Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
 Frame = -2

Query: 500 CKXEFVGWXKCVE--QAEAEGSDVVERCYDATSALRRCMDKFPDYY 369
           C  +F     C    Q E +GSD    C D    ++ CM K+PD Y
Sbjct: 64  CGEQFKSAFSCFHYSQEEIKGSD----CLDQFRGMQECMQKYPDLY 105

>MIA40_HUMAN (Q8N4Q1) Mitochondrial intermembrane space import and assembly|
           protein 40 (Coiled-coil-helix-coiled-coil-helix
           domain-containing protein 4)
          Length = 142

 Score = 30.4 bits (67), Expect = 2.8
 Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
 Frame = -2

Query: 500 CKXEFVGWXKCVEQA--EAEGSDVVERCYDATSALRRCMDKFPDYY 369
           C  +F     C   +  E +GSD    C D   A++ CM K+PD Y
Sbjct: 64  CGEQFKSAFSCFHYSTEEIKGSD----CVDQFRAMQECMQKYPDLY 105

>DIML_CAEEL (O17397) Diminuto-like protein|
          Length = 525

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = -2

Query: 467 VEQAEAEGSDVVERC-YDATSALRRCMDKFPDYYEPILRAER 345
           +    AE +++ +R  YD   A  +C+D FPD Y+ I R+ R
Sbjct: 483 IYMTRAEYAEMFDRTLYDWKRASCKCIDAFPDIYDKICRSGR 524

>MIA40_RAT (Q5BJN5) Mitochondrial intermembrane space import and assembly|
           protein 40 (Coiled-coil-helix-coiled-coil-helix
           domain-containing protein 4)
          Length = 139

 Score = 29.6 bits (65), Expect = 4.8
 Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
 Frame = -2

Query: 500 CKXEFVGWXKCVEQA--EAEGSDVVERCYDATSALRRCMDKFPDYYEPILRAERAMAEDI 327
           C  +F     C   +  + +GSD    C D   A++ CM K+PD Y P    E   A+ +
Sbjct: 64  CGEQFKSAFSCFHYSTEDIKGSD----CIDQFRAMQECMQKYPDLY-PQDEEEEEEAKPV 118

Query: 326 E 324
           E
Sbjct: 119 E 119

>MIA40_MOUSE (Q8VEA4) Mitochondrial intermembrane space import and assembly|
           protein 40 (Coiled-coil-helix-coiled-coil-helix
           domain-containing protein 4)
          Length = 139

 Score = 29.6 bits (65), Expect = 4.8
 Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
 Frame = -2

Query: 500 CKXEFVGWXKCVEQA--EAEGSDVVERCYDATSALRRCMDKFPDYYEPILRAERAMAEDI 327
           C  +F     C   +  + +GSD    C D   A++ CM K+PD Y P    E   A+ +
Sbjct: 64  CGEQFKSAFSCFHYSTEDIKGSD----CIDQFRAMQECMQKYPDLY-PQDEEEEEEAKPV 118

Query: 326 E 324
           E
Sbjct: 119 E 119

>MIA40_BOVIN (Q2KHZ4) Mitochondrial intermembrane space import and assembly|
           protein 40 (Coiled-coil-helix-coiled-coil-helix
           domain-containing protein 4)
          Length = 137

 Score = 29.6 bits (65), Expect = 4.8
 Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
 Frame = -2

Query: 500 CKXEFVGWXKCVEQA--EAEGSDVVERCYDATSALRRCMDKFPDYY 369
           C  +F     C   +  + +GSD    C D   A++ CM K+PD Y
Sbjct: 64  CGEQFKAAFSCFHYSKEDVKGSD----CVDQFRAMQECMQKYPDLY 105


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,352,812
Number of Sequences: 219361
Number of extensions: 703691
Number of successful extensions: 2078
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2056
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2078
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3638905326
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)