ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal1e02
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|Y12595.1|OSGOG2 O.sativa mRNA for Fd-GOGAT, partial, clone O... 80 5e-12
2emb|Y12594.1|OSGOG1 O.sativa mRNA for Fd-GOGAT, partial, clone O... 80 5e-12
3dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 80 5e-12
4dbj|AP005184.5| Oryza sativa (japonica cultivar-group) genomic D... 80 5e-12
5dbj|AP003833.3| Oryza sativa (japonica cultivar-group) genomic D... 80 5e-12
6dbj|AK068130.1| Oryza sativa (japonica cultivar-group) cDNA clon... 80 5e-12
7gb|AY109539.1| Zea mays CL2484_1 mRNA sequence 68 2e-08
8gb|M59190.1|MZEFEGLU Zea mays ferredoxin-dependent glutamate syn... 68 2e-08
9gb|DQ127702.1| Emiliania huxleyi virus 163 clone mike215.seq par... 44 0.25
10emb|AJ890364.1| Emiliania huxleyi virus 86 isolate EhV86 44 0.25
11emb|AL929226.7| Mouse DNA sequence from clone RP23-368N20 on chr... 44 0.25
12gb|AY819158.1| Hyla palmeri proopiomelanocortin A (POMC) gene, p... 40 4.0
13emb|BX927394.14| Zebrafish DNA sequence from clone CH211-262I10 ... 40 4.0
14gb|CP000083.1| Colwellia psychrerythraea 34H, complete genome 40 4.0
15gb|AC102448.15| Mus musculus chromosome 3, clone RP24-209L5, com... 40 4.0
16emb|AL833803.8| Mouse DNA sequence from clone RP23-244H7 on chro... 40 4.0 
>emb|Y12595.1|OSGOG2 O.sativa mRNA for Fd-GOGAT, partial, clone OsGog2
          Length = 4120

 Score = 79.8 bits (40), Expect = 5e-12
 Identities = 66/74 (89%), Gaps = 3/74 (4%)
 Strand = Plus / Minus

                                                                        
Query: 28   gcacatgccactcgcatgcctacaccacaggacgggtataaatataagaactaatgtgtc 87
            |||||||| |||||||||||    |||| |||||||||||||| ||||||||||||||||
Sbjct: 3936 gcacatgcgactcgcatgccc---ccactggacgggtataaatgtaagaactaatgtgtc 3880

                          
Query: 88   cagaacaaaaaata 101
            |||||| |||||||
Sbjct: 3879 cagaaccaaaaata 3866



 Score = 60.0 bits (30), Expect = 4e-06
 Identities = 39/42 (92%)
 Strand = Plus / Minus

                                                      
Query: 262  aagatgccttggacagagcttccacaaaattgcagcctttgg 303
            |||||||||||| ||||||||||||||||| |||| ||||||
Sbjct: 3687 aagatgccttgggcagagcttccacaaaatcgcagtctttgg 3646



 Score = 50.1 bits (25), Expect = 0.004
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                         
Query: 169  cctagcgtcagcgaaccaatttacagggg 197
            |||||||||||| ||||||||||||||||
Sbjct: 3790 cctagcgtcagcaaaccaatttacagggg 3762
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>emb|Y12594.1|OSGOG1 O.sativa mRNA for Fd-GOGAT, partial, clone OsGog1
          Length = 2851

 Score = 79.8 bits (40), Expect = 5e-12
 Identities = 66/74 (89%), Gaps = 3/74 (4%)
 Strand = Plus / Minus

                                                                        
Query: 28   gcacatgccactcgcatgcctacaccacaggacgggtataaatataagaactaatgtgtc 87
            |||||||| |||||||||||    |||| |||||||||||||| ||||||||||||||||
Sbjct: 2667 gcacatgcgactcgcatgccc---ccactggacgggtataaatgtaagaactaatgtgtc 2611

                          
Query: 88   cagaacaaaaaata 101
            |||||| |||||||
Sbjct: 2610 cagaaccaaaaata 2597



 Score = 60.0 bits (30), Expect = 4e-06
 Identities = 39/42 (92%)
 Strand = Plus / Minus

                                                      
Query: 262  aagatgccttggacagagcttccacaaaattgcagcctttgg 303
            |||||||||||| ||||||||||||||||| |||| ||||||
Sbjct: 2418 aagatgccttgggcagagcttccacaaaatcgcagtctttgg 2377



 Score = 50.1 bits (25), Expect = 0.004
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                         
Query: 169  cctagcgtcagcgaaccaatttacagggg 197
            |||||||||||| ||||||||||||||||
Sbjct: 2521 cctagcgtcagcaaaccaatttacagggg 2493
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 79.8 bits (40), Expect = 5e-12
 Identities = 66/74 (89%), Gaps = 3/74 (4%)
 Strand = Plus / Plus

                                                                            
Query: 28       gcacatgccactcgcatgcctacaccacaggacgggtataaatataagaactaatgtgtc 87
                |||||||| |||||||||||    |||| |||||||||||||| ||||||||||||||||
Sbjct: 27669553 gcacatgcgactcgcatgccc---ccactggacgggtataaatgtaagaactaatgtgtc 27669609

                              
Query: 88       cagaacaaaaaata 101
                |||||| |||||||
Sbjct: 27669610 cagaaccaaaaata 27669623



 Score = 60.0 bits (30), Expect = 4e-06
 Identities = 39/42 (92%)
 Strand = Plus / Plus

                                                          
Query: 262      aagatgccttggacagagcttccacaaaattgcagcctttgg 303
                |||||||||||| ||||||||||||||||| |||| ||||||
Sbjct: 27669804 aagatgccttgggcagagcttccacaaaatcgcagtctttgg 27669845



 Score = 50.1 bits (25), Expect = 0.004
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                             
Query: 169      cctagcgtcagcgaaccaatttacagggg 197
                |||||||||||| ||||||||||||||||
Sbjct: 27669701 cctagcgtcagcaaaccaatttacagggg 27669729
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>dbj|AP005184.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
              clone:P0047B07
          Length = 157797

 Score = 79.8 bits (40), Expect = 5e-12
 Identities = 66/74 (89%), Gaps = 3/74 (4%)
 Strand = Plus / Plus

                                                                          
Query: 28     gcacatgccactcgcatgcctacaccacaggacgggtataaatataagaactaatgtgtc 87
              |||||||| |||||||||||    |||| |||||||||||||| ||||||||||||||||
Sbjct: 126546 gcacatgcgactcgcatgccc---ccactggacgggtataaatgtaagaactaatgtgtc 126602

                            
Query: 88     cagaacaaaaaata 101
              |||||| |||||||
Sbjct: 126603 cagaaccaaaaata 126616



 Score = 60.0 bits (30), Expect = 4e-06
 Identities = 39/42 (92%)
 Strand = Plus / Plus

                                                        
Query: 262    aagatgccttggacagagcttccacaaaattgcagcctttgg 303
              |||||||||||| ||||||||||||||||| |||| ||||||
Sbjct: 126797 aagatgccttgggcagagcttccacaaaatcgcagtctttgg 126838



 Score = 50.1 bits (25), Expect = 0.004
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                           
Query: 169    cctagcgtcagcgaaccaatttacagggg 197
              |||||||||||| ||||||||||||||||
Sbjct: 126694 cctagcgtcagcaaaccaatttacagggg 126722
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>dbj|AP003833.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1477_F01
          Length = 158792

 Score = 79.8 bits (40), Expect = 5e-12
 Identities = 66/74 (89%), Gaps = 3/74 (4%)
 Strand = Plus / Plus

                                                                         
Query: 28    gcacatgccactcgcatgcctacaccacaggacgggtataaatataagaactaatgtgtc 87
             |||||||| |||||||||||    |||| |||||||||||||| ||||||||||||||||
Sbjct: 48655 gcacatgcgactcgcatgccc---ccactggacgggtataaatgtaagaactaatgtgtc 48711

                           
Query: 88    cagaacaaaaaata 101
             |||||| |||||||
Sbjct: 48712 cagaaccaaaaata 48725



 Score = 60.0 bits (30), Expect = 4e-06
 Identities = 39/42 (92%)
 Strand = Plus / Plus

                                                       
Query: 262   aagatgccttggacagagcttccacaaaattgcagcctttgg 303
             |||||||||||| ||||||||||||||||| |||| ||||||
Sbjct: 48906 aagatgccttgggcagagcttccacaaaatcgcagtctttgg 48947



 Score = 50.1 bits (25), Expect = 0.004
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                          
Query: 169   cctagcgtcagcgaaccaatttacagggg 197
             |||||||||||| ||||||||||||||||
Sbjct: 48803 cctagcgtcagcaaaccaatttacagggg 48831
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>dbj|AK068130.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013132D11, full
            insert sequence
          Length = 3596

 Score = 79.8 bits (40), Expect = 5e-12
 Identities = 66/74 (89%), Gaps = 3/74 (4%)
 Strand = Plus / Minus

                                                                        
Query: 28   gcacatgccactcgcatgcctacaccacaggacgggtataaatataagaactaatgtgtc 87
            |||||||| |||||||||||    |||| |||||||||||||| ||||||||||||||||
Sbjct: 3553 gcacatgcgactcgcatgccc---ccactggacgggtataaatgtaagaactaatgtgtc 3497

                          
Query: 88   cagaacaaaaaata 101
            |||||| |||||||
Sbjct: 3496 cagaaccaaaaata 3483



 Score = 60.0 bits (30), Expect = 4e-06
 Identities = 39/42 (92%)
 Strand = Plus / Minus

                                                      
Query: 262  aagatgccttggacagagcttccacaaaattgcagcctttgg 303
            |||||||||||| ||||||||||||||||| |||| ||||||
Sbjct: 3302 aagatgccttgggcagagcttccacaaaatcgcagtctttgg 3261



 Score = 50.1 bits (25), Expect = 0.004
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                         
Query: 169  cctagcgtcagcgaaccaatttacagggg 197
            |||||||||||| ||||||||||||||||
Sbjct: 3405 cctagcgtcagcaaaccaatttacagggg 3377
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>gb|AY109539.1| Zea mays CL2484_1 mRNA sequence
          Length = 5572

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 37/38 (97%)
 Strand = Plus / Minus

                                                  
Query: 161  ccttgcagcctagcgtcagcgaaccaatttacaggggt 198
            |||||||||||||||||||| |||||||||||||||||
Sbjct: 5431 ccttgcagcctagcgtcagcaaaccaatttacaggggt 5394
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>gb|M59190.1|MZEFEGLU Zea mays ferredoxin-dependent glutamate synthase mRNA, complete cds
          Length = 5617

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 37/38 (97%)
 Strand = Plus / Minus

                                                  
Query: 161  ccttgcagcctagcgtcagcgaaccaatttacaggggt 198
            |||||||||||||||||||| |||||||||||||||||
Sbjct: 5431 ccttgcagcctagcgtcagcaaaccaatttacaggggt 5394
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>gb|DQ127702.1| Emiliania huxleyi virus 163 clone mike215.seq partial sequence
          Length = 645

 Score = 44.1 bits (22), Expect = 0.25
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 88  cagaacaaaaaatataattaca 109
           ||||||||||||||||||||||
Sbjct: 245 cagaacaaaaaatataattaca 224
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>emb|AJ890364.1| Emiliania huxleyi virus 86 isolate EhV86
          Length = 407339

 Score = 44.1 bits (22), Expect = 0.25
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 88     cagaacaaaaaatataattaca 109
              ||||||||||||||||||||||
Sbjct: 268710 cagaacaaaaaatataattaca 268689
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>emb|AL929226.7| Mouse DNA sequence from clone RP23-368N20 on chromosome X, complete
            sequence
          Length = 79248

 Score = 44.1 bits (22), Expect = 0.25
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 60   cgggtataaatataagaactaa 81
            ||||||||||||||||||||||
Sbjct: 7441 cgggtataaatataagaactaa 7420
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>gb|AY819158.1| Hyla palmeri proopiomelanocortin A (POMC) gene, partial cds
          Length = 523

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 260 agaagatgccttggacagag 279
           ||||||||||||||||||||
Sbjct: 229 agaagatgccttggacagag 248
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>emb|BX927394.14| Zebrafish DNA sequence from clone CH211-262I10 in linkage group 21,
              complete sequence
          Length = 164899

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 86     tccagaacaaaaaatataat 105
              ||||||||||||||||||||
Sbjct: 127681 tccagaacaaaaaatataat 127700
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>gb|CP000083.1| Colwellia psychrerythraea 34H, complete genome
          Length = 5373180

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 90      gaacaaaaaatataattaca 109
               ||||||||||||||||||||
Sbjct: 3061037 gaacaaaaaatataattaca 3061056
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>gb|AC102448.15| Mus musculus chromosome 3, clone RP24-209L5, complete sequence
          Length = 159371

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 3      tttatttatactgtactgaa 22
              ||||||||||||||||||||
Sbjct: 127706 tttatttatactgtactgaa 127725
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>emb|AL833803.8| Mouse DNA sequence from clone RP23-244H7 on chromosome 2, complete
             sequence
          Length = 226251

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 33    tgccactcgcatgcctacac 52
             ||||||||||||||||||||
Sbjct: 32275 tgccactcgcatgcctacac 32256


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,419,593
Number of Sequences: 3902068
Number of extensions: 3419593
Number of successful extensions: 59782
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 59705
Number of HSP's gapped (non-prelim): 71
length of query: 303
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 281
effective length of database: 17,147,199,772
effective search space: 4818363135932
effective search space used: 4818363135932
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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