ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags25f22
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_470255.1| Oryza sativa (japonica cultivar-group), predic... 373 e-100
2gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 202 1e-48
3gb|AC099401.2| Oryza sativa (japonica cultivar-group) chromosome... 202 1e-48
4dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 202 1e-48
5gb|AY109552.1| Zea mays CL3912_1 mRNA sequence 174 2e-40
6ref|NM_115171.2| Arabidopsis thaliana LOS4; ATP-dependent helica... 52 0.002
7gb|BT008867.1| Arabidopsis thaliana At3g53110 mRNA, complete cds 52 0.002
8gb|BT002444.1| Arabidopsis thaliana RNA helicase -like protein (... 52 0.002
9ref|XM_500004.1| Yarrowia lipolytica CLIB122, YALI0A12133g predi... 44 0.57
10gb|AY057548.1| Arabidopsis thaliana AT3g53110/T4D2_40 mRNA, comp... 44 0.57
11emb|CR382127.1| Yarrowia lipolytica chromosome A of strain CLIB1... 44 0.57
12gb|AC106595.9| Rattus norvegicus 7 BAC CH230-237N20 (Children's ... 42 2.3
13gb|AC161364.4| Mus musculus BAC clone RP24-353J16 from chromosom... 42 2.3
14gb|AC124582.4| Mus musculus BAC clone RP23-120A15 from 6, comple... 42 2.3
15ref|XM_737405.1| Plasmodium chabaudi chabaudi hypothetical prote... 42 2.3
16ref|XM_671789.1| Plasmodium berghei strain ANKA hypothetical pro... 42 2.3
17emb|BX901919.8| Zebrafish DNA sequence from clone DKEY-30I6 in l... 42 2.3
18gb|AY531136.1| Human poliovirus 1 isolate EGY02-E31-K6745 VP1 pr... 42 2.3
19gb|AC154596.2| Mus musculus BAC clone RP23-354C17 from chromosom... 42 2.3
20emb|AL954383.13| Zebrafish DNA sequence from clone CH211-226M11 ... 42 2.3
21dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.3
22dbj|AP003627.3| Oryza sativa (japonica cultivar-group) genomic D... 42 2.3
23emb|AL935174.11| Zebrafish DNA sequence from clone CH211-195B21 ... 42 2.3
24gb|AC163731.2| Mus musculus BAC clone RP23-380F10 from chromosom... 42 2.3
25gb|CP000110.1| Synechococcus sp. CC9605, complete genome 40 8.9
26gb|BC081601.1| Danio rerio zgc:92124, mRNA (cDNA clone MGC:92124... 40 8.9
27gb|BC079722.1| Xenopus laevis MGC82990 protein, mRNA (cDNA clone... 40 8.9
28ref|XM_370482.1| Magnaporthe grisea 70-15 chromosome II hypothet... 40 8.9
29ref|XM_461305.1| Debaryomyces hansenii CBS767 hypothetical prote... 40 8.9
30gb|AC149479.1| Populus trichocarpa clone Pop1-017N13, complete s... 40 8.9
31gb|AC149428.1| Populus trichocarpa clone Pop1-080J15, complete s... 40 8.9
32gb|AC149297.1| Populus trichocarpa clone Pop1-015H07, complete s... 40 8.9
33gb|AC140212.2| Mus musculus BAC clone RP23-267G14 from chromosom... 40 8.9
34ref|XM_749705.1| Aspergillus fumigatus Af293 eukaryotic translat... 40 8.9
35ref|XM_381137.1| Gibberella zeae PH-1 chromosome 1 hypothetical ... 40 8.9
36ref|XM_572889.1| Cryptococcus neoformans var. neoformans JEC21 A... 40 8.9
37ref|XM_501186.1| Yarrowia lipolytica CLIB122, YALI0B21538g predi... 40 8.9
38emb|CR382138.1| Debaryomyces hansenii chromosome F of strain CBS... 40 8.9
39emb|AL161549.2|ATCHRIV49 Arabidopsis thaliana DNA chromosome 4, ... 40 8.9
40emb|AL132958.1|ATT4D2 Arabidopsis thaliana DNA chromosome 3, BAC... 40 8.9
41emb|AL035526.1|ATF28A21 Arabidopsis thaliana DNA chromosome 4, B... 40 8.9
42emb|CR631123.6| Zebrafish DNA sequence from clone DKEY-189H14 in... 40 8.9
43emb|CR352237.9| Zebrafish DNA sequence from clone CH211-13I11 in... 40 8.9
44ref|NM_001004543.1| Danio rerio zgc:92124 (zgc:92124), mRNA 40 8.9
45emb|BX469906.11| Zebrafish DNA sequence from clone DKEY-127K9 in... 40 8.9
46emb|BX942820.7| Zebrafish DNA sequence from clone CH211-222L23 i... 40 8.9
47gb|AC091811.7| Oryza sativa chromosome 3 BAC OSJNBa0069E14 genom... 40 8.9
48ref|XM_686030.1| PREDICTED: Danio rerio similar to Tyrosine-prot... 40 8.9
49emb|BX663499.5| Zebrafish DNA sequence from clone CH211-160I2 in... 40 8.9
50emb|BX323874.4| Zebrafish DNA sequence from clone DKEY-104N21 in... 40 8.9
51gb|AE016816.1| Ashbya gossypii (= Eremothecium gossypii) ATCC 10... 40 8.9
52emb|BX571853.4| Zebrafish DNA sequence from clone DKEY-29H14 in ... 40 8.9
53dbj|AP003390.1| Homo sapiens genomic DNA, chromosome 11q clone:C... 40 8.9
54dbj|AP006878.1| Thermococcus kodakarensis KOD1 DNA, complete genome 40 8.9
55gb|AC069333.8| Homo sapiens BAC clone RP11-634D21 from 2, comple... 40 8.9
56gb|AF539527.1| Mus musculus strain C57BL/6 O-linked GlcNAc trans... 40 8.9
57emb|BX005342.14| Zebrafish DNA sequence from clone DKEY-81P7, co... 40 8.9
58gb|AF269968.1|AF269968 Staphylococcus epidermidis strain SR1 clo... 40 8.9
59gb|AF269932.1|AF269932 Staphylococcus epidermidis strain SR1 clo... 40 8.9
60dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome 40 8.9
61emb|BX323086.4| Zebrafish DNA sequence from clone DKEY-170I11 in... 40 8.9
62gb|CP000029.1| Staphylococcus epidermidis RP62A, complete genome 40 8.9
63emb|AL929006.3| Zebrafish DNA sequence from clone CH211-198G19 i... 40 8.9
64ref|NM_209008.1| Eremothecium gossypii ACR253Cp (ACR253C), mRNA 40 8.9
65emb|BX255893.5| Zebrafish DNA sequence from clone CH211-272H10 i... 40 8.9
66emb|CR854847.7| Zebrafish DNA sequence from clone DKEY-266L9 in ... 40 8.9
67emb|BX323850.16| Zebrafish DNA sequence from clone DKEY-156A5 in... 40 8.9
68emb|CR377211.7| Zebrafish DNA sequence from clone DKEYP-13A3 in ... 40 8.9
69dbj|AP001994.4| Homo sapiens genomic DNA, chromosome 11q, clone:... 40 8.9
70emb|CR382128.1| Yarrowia lipolytica chromosome B of strain CLIB1... 40 8.9
71emb|AL806534.3| Mouse DNA sequence from clone RP23-334A11 on chr... 40 8.9 
>ref|XM_470255.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1635

 Score =  373 bits (188), Expect = e-100
 Identities = 335/384 (87%)
 Strand = Plus / Minus

                                                                        
Query: 272  gcatccttgagagcagtctcaaaattgtcctcgcttttccagttggggacctcgggcact 331
            |||||||| |||||  | |||||||  |||||||||| ||| ||  | ||||| || || 
Sbjct: 1619 gcatccttcagagctctttcaaaatcttcctcgctttgccaattacgaacctcaggaaca 1560

                                                                        
Query: 332  ttgtgctggaagtagtcctcgatctttgtcatcacaacttcatcagtttgaccacatagc 391
            |||||||||||||||  ||| |||||| ||||||||   | ||| ||||  || ||||||
Sbjct: 1559 ttgtgctggaagtaggtctcaatctttctcatcacagtgttatctgtttcgccgcatagc 1500

                                                                        
Query: 392  aggttgaacacggctccttttcggccaaatcgcccagctctgccgattctgtgcaggtac 451
            | |||||| || ||||||||||||||||| || ||||||||||| |||||||||||||||
Sbjct: 1499 aagttgaaaacagctccttttcggccaaagcgaccagctctgccaattctgtgcaggtac 1440

                                                                        
Query: 452  acctcataatcaggttcatctctcgtgttatacttgattggcatgtcgtagttgatgacc 511
            || |||||||||||||||||||| |||  | |||||||||||||||| || |||||||| 
Sbjct: 1439 acttcataatcaggttcatctcttgtgccaaacttgattggcatgtcataattgatgacg 1380

                                                                        
Query: 512  aggttaacctgtgcttggtcaaaaccacgagcaagaacatcagttgatataagaaccttg 571
            |||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct: 1379 aggttaacctgtgcttggtcgaaacctcgagcaagaacatcagttgatataagaaccttg 1320

                                                                        
Query: 572  gtgtacccatctttgaattcctgaattactttttccctctctgcttggtcaagggatcct 631
            |||||||||| |||||||||||| ||||  ||||||||||||| ||||||||||||||||
Sbjct: 1319 gtgtacccatttttgaattcctgtattatcttttccctctctgattggtcaagggatcct 1260

                                    
Query: 632  tgaattgaggagcacacatagtcc 655
            ||||| |||||||| |||||||||
Sbjct: 1259 tgaatcgaggagcatacatagtcc 1236
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  202 bits (102), Expect = 1e-48
 Identities = 129/138 (93%)
 Strand = Plus / Minus

                                                                           
Query: 518     acctgtgcttggtcaaaaccacgagcaagaacatcagttgatataagaaccttggtgtac 577
               |||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 3100597 acctgtgcttggtcgaaacctcgagcaagaacatcagttgatataagaaccttggtgtac 3100538

                                                                           
Query: 578     ccatctttgaattcctgaattactttttccctctctgcttggtcaagggatccttgaatt 637
               |||| |||||||||||| ||||  ||||||||||||| ||||||||||||||||||||| 
Sbjct: 3100537 ccatttttgaattcctgtattatcttttccctctctgattggtcaagggatccttgaatc 3100478

                                 
Query: 638     gaggagcacacatagtcc 655
               |||||||| |||||||||
Sbjct: 3100477 gaggagcatacatagtcc 3100460



 Score =  141 bits (71), Expect = 3e-30
 Identities = 104/115 (90%)
 Strand = Plus / Minus

                                                                           
Query: 407     ccttttcggccaaatcgcccagctctgccgattctgtgcaggtacacctcataatcaggt 466
               |||||||||||||| || ||||||||||| ||||||||||||||||| ||||||||||||
Sbjct: 3100778 ccttttcggccaaagcgaccagctctgccaattctgtgcaggtacacttcataatcaggt 3100719

                                                                      
Query: 467     tcatctctcgtgttatacttgattggcatgtcgtagttgatgaccaggttaacct 521
               |||||||| |||  | |||||||||||||||| || |||||||| ||||||||||
Sbjct: 3100718 tcatctcttgtgccaaacttgattggcatgtcataattgatgacgaggttaacct 3100664



 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 478      gttatacttgattggcatgt 497
                ||||||||||||||||||||
Sbjct: 30518459 gttatacttgattggcatgt 30518478



 Score = 40.1 bits (20), Expect = 8.9
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                                   
Query: 332     ttgtgctggaagtagtcctcgatctttgtcatcaca 367
               |||||||||||||||  ||| |||||| ||||||||
Sbjct: 3101409 ttgtgctggaagtaggtctcaatctttctcatcaca 3101374
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>gb|AC099401.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1134F05,
             complete sequence
          Length = 101799

 Score =  202 bits (102), Expect = 1e-48
 Identities = 129/138 (93%)
 Strand = Plus / Minus

                                                                         
Query: 518   acctgtgcttggtcaaaaccacgagcaagaacatcagttgatataagaaccttggtgtac 577
             |||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 23610 acctgtgcttggtcgaaacctcgagcaagaacatcagttgatataagaaccttggtgtac 23551

                                                                         
Query: 578   ccatctttgaattcctgaattactttttccctctctgcttggtcaagggatccttgaatt 637
             |||| |||||||||||| ||||  ||||||||||||| ||||||||||||||||||||| 
Sbjct: 23550 ccatttttgaattcctgtattatcttttccctctctgattggtcaagggatccttgaatc 23491

                               
Query: 638   gaggagcacacatagtcc 655
             |||||||| |||||||||
Sbjct: 23490 gaggagcatacatagtcc 23473



 Score =  141 bits (71), Expect = 3e-30
 Identities = 104/115 (90%)
 Strand = Plus / Minus

                                                                         
Query: 407   ccttttcggccaaatcgcccagctctgccgattctgtgcaggtacacctcataatcaggt 466
             |||||||||||||| || ||||||||||| ||||||||||||||||| ||||||||||||
Sbjct: 23791 ccttttcggccaaagcgaccagctctgccaattctgtgcaggtacacttcataatcaggt 23732

                                                                    
Query: 467   tcatctctcgtgttatacttgattggcatgtcgtagttgatgaccaggttaacct 521
             |||||||| |||  | |||||||||||||||| || |||||||| ||||||||||
Sbjct: 23731 tcatctcttgtgccaaacttgattggcatgtcataattgatgacgaggttaacct 23677



 Score = 40.1 bits (20), Expect = 8.9
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                                 
Query: 332   ttgtgctggaagtagtcctcgatctttgtcatcaca 367
             |||||||||||||||  ||| |||||| ||||||||
Sbjct: 24422 ttgtgctggaagtaggtctcaatctttctcatcaca 24387
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score =  202 bits (102), Expect = 1e-48
 Identities = 129/138 (93%)
 Strand = Plus / Minus

                                                                           
Query: 518     acctgtgcttggtcaaaaccacgagcaagaacatcagttgatataagaaccttggtgtac 577
               |||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 3100708 acctgtgcttggtcgaaacctcgagcaagaacatcagttgatataagaaccttggtgtac 3100649

                                                                           
Query: 578     ccatctttgaattcctgaattactttttccctctctgcttggtcaagggatccttgaatt 637
               |||| |||||||||||| ||||  ||||||||||||| ||||||||||||||||||||| 
Sbjct: 3100648 ccatttttgaattcctgtattatcttttccctctctgattggtcaagggatccttgaatc 3100589

                                 
Query: 638     gaggagcacacatagtcc 655
               |||||||| |||||||||
Sbjct: 3100588 gaggagcatacatagtcc 3100571



 Score =  141 bits (71), Expect = 3e-30
 Identities = 104/115 (90%)
 Strand = Plus / Minus

                                                                           
Query: 407     ccttttcggccaaatcgcccagctctgccgattctgtgcaggtacacctcataatcaggt 466
               |||||||||||||| || ||||||||||| ||||||||||||||||| ||||||||||||
Sbjct: 3100889 ccttttcggccaaagcgaccagctctgccaattctgtgcaggtacacttcataatcaggt 3100830

                                                                      
Query: 467     tcatctctcgtgttatacttgattggcatgtcgtagttgatgaccaggttaacct 521
               |||||||| |||  | |||||||||||||||| || |||||||| ||||||||||
Sbjct: 3100829 tcatctcttgtgccaaacttgattggcatgtcataattgatgacgaggttaacct 3100775



 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 478      gttatacttgattggcatgt 497
                ||||||||||||||||||||
Sbjct: 30609881 gttatacttgattggcatgt 30609900



 Score = 40.1 bits (20), Expect = 8.9
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                                   
Query: 332     ttgtgctggaagtagtcctcgatctttgtcatcaca 367
               |||||||||||||||  ||| |||||| ||||||||
Sbjct: 3101520 ttgtgctggaagtaggtctcaatctttctcatcaca 3101485
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>gb|AY109552.1| Zea mays CL3912_1 mRNA sequence
          Length = 1308

 Score =  174 bits (88), Expect = 2e-40
 Identities = 182/212 (85%), Gaps = 1/212 (0%)
 Strand = Plus / Plus

                                                                        
Query: 263  agtaaacccgcatccttgagagcagtctcaaaattgtcctcgcttttccagttggggacc 322
            |||||||| |||||||||||||||| ||||||||  || || | || ||| ||  | |||
Sbjct: 1094 agtaaacctgcatccttgagagcagcctcaaaatcttcttcacgttgccaattccgaacc 1153

                                                                        
Query: 323  tcgggcactttgtgctggaagtagtcctcgatctttgtcatcacaacttcatcagtttga 382
            || |||||  |||||||||| ||||||||||||||  |||||||||| | ||| ||||||
Sbjct: 1154 tcaggcacactgtgctggaaatagtcctcgatcttcttcatcacaacattatcggtttga 1213

                                                                        
Query: 383  ccacatagcaggttgaacacggctccttttcggccaaatcgcccagctctgccgattctg 442
            ||||| |||| ||||||||| || ||||| |||||||| |||||||||||||| ||||||
Sbjct: 1214 ccacacagcaagttgaacacagcacctttccggccaaagcgcccagctctgccaattctg 1273

                                            
Query: 443  tgcaggtacacctcataatcaggttcatctct 474
            |||| |||||||||| ||||||||||||||||
Sbjct: 1274 tgcaagtacacctca-aatcaggttcatctct 1304
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>ref|NM_115171.2| Arabidopsis thaliana LOS4; ATP-dependent helicase AT3G53110 (LOS4)
            mRNA, complete cds
          Length = 1813

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 62/74 (83%)
 Strand = Plus / Minus

                                                                        
Query: 389  agcaggttgaacacggctccttttcggccaaatcgcccagctctgccgattctgtgcagg 448
            |||| |||||| || |||||||| || ||||| || |||||||| || |  ||||| |||
Sbjct: 1436 agcaagttgaaaaccgctcctttgcgaccaaaccggccagctctcccaaccctgtgaagg 1377

                          
Query: 449  tacacctcataatc 462
            ||||||||||||||
Sbjct: 1376 tacacctcataatc 1363
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>gb|BT008867.1| Arabidopsis thaliana At3g53110 mRNA, complete cds
          Length = 1491

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 62/74 (83%)
 Strand = Plus / Minus

                                                                        
Query: 389  agcaggttgaacacggctccttttcggccaaatcgcccagctctgccgattctgtgcagg 448
            |||| |||||| || |||||||| || ||||| || |||||||| || |  ||||| |||
Sbjct: 1352 agcaagttgaaaaccgctcctttgcgaccaaaccggccagctctcccaaccctgtgaagg 1293

                          
Query: 449  tacacctcataatc 462
            ||||||||||||||
Sbjct: 1292 tacacctcataatc 1279
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>gb|BT002444.1| Arabidopsis thaliana RNA helicase -like protein (At3g53110) mRNA,
            complete cds
          Length = 1756

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 62/74 (83%)
 Strand = Plus / Minus

                                                                        
Query: 389  agcaggttgaacacggctccttttcggccaaatcgcccagctctgccgattctgtgcagg 448
            |||| |||||| || |||||||| || ||||| || |||||||| || |  ||||| |||
Sbjct: 1434 agcaagttgaaaaccgctcctttgcgaccaaaccggccagctctcccaaccctgtgaagg 1375

                          
Query: 449  tacacctcataatc 462
            ||||||||||||||
Sbjct: 1374 tacacctcataatc 1361
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>ref|XM_500004.1| Yarrowia lipolytica CLIB122, YALI0A12133g predicted mRNA
          Length = 1443

 Score = 44.1 bits (22), Expect = 0.57
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 494  atgtcgtagttgatgaccaggt 515
            ||||||||||||||||||||||
Sbjct: 1139 atgtcgtagttgatgaccaggt 1118
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>gb|AY057548.1| Arabidopsis thaliana AT3g53110/T4D2_40 mRNA, complete cds
          Length = 1754

 Score = 44.1 bits (22), Expect = 0.57
 Identities = 61/74 (82%)
 Strand = Plus / Minus

                                                                        
Query: 389  agcaggttgaacacggctccttttcggccaaatcgcccagctctgccgattctgtgcagg 448
            |||| |||||| || |||||||| || ||||| || |||||| | || |  ||||| |||
Sbjct: 1436 agcaagttgaaaaccgctcctttgcgaccaaaccggccagctatcccaaccctgtgaagg 1377

                          
Query: 449  tacacctcataatc 462
            ||||||||||||||
Sbjct: 1376 tacacctcataatc 1363
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>emb|CR382127.1| Yarrowia lipolytica chromosome A of strain CLIB122 of Yarrowia lipolytica
          Length = 2303261

 Score = 44.1 bits (22), Expect = 0.57
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 494     atgtcgtagttgatgaccaggt 515
               ||||||||||||||||||||||
Sbjct: 1273573 atgtcgtagttgatgaccaggt 1273594
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>gb|AC106595.9| Rattus norvegicus 7 BAC CH230-237N20 (Children's Hospital Oakland
              Research Institute) complete sequence
          Length = 214961

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 597    ttactttttccctctctgctt 617
              |||||||||||||||||||||
Sbjct: 113437 ttactttttccctctctgctt 113457
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>gb|AC161364.4| Mus musculus BAC clone RP24-353J16 from chromosome 6, complete sequence
          Length = 182872

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 94    cttttgaaaataacaagcataagaatgta 122
             ||||| ||||||||| |||||||||||||
Sbjct: 43977 cttttaaaaataacatgcataagaatgta 43949
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>gb|AC124582.4| Mus musculus BAC clone RP23-120A15 from 6, complete sequence
          Length = 183555

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 7      tacagtgtacatacagatgaa 27
              |||||||||||||||||||||
Sbjct: 103390 tacagtgtacatacagatgaa 103410
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>ref|XM_737405.1| Plasmodium chabaudi chabaudi hypothetical protein (PC301184.00.0)
            partial mRNA
          Length = 2649

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 23   atgaattctcaagaagattac 43
            |||||||||||||||||||||
Sbjct: 2095 atgaattctcaagaagattac 2075
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>ref|XM_671789.1| Plasmodium berghei strain ANKA hypothetical protein (PB001077.01.0)
            partial mRNA
          Length = 3624

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 23   atgaattctcaagaagattac 43
            |||||||||||||||||||||
Sbjct: 2350 atgaattctcaagaagattac 2330
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>emb|BX901919.8| Zebrafish DNA sequence from clone DKEY-30I6 in linkage group 25,
             complete sequence
          Length = 233401

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 409   ttttcggccaaatcgcccagc 429
             |||||||||||||||||||||
Sbjct: 91164 ttttcggccaaatcgcccagc 91184
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>gb|AY531136.1| Human poliovirus 1 isolate EGY02-E31-K6745 VP1 protein (VP1) mRNA,
           partial cds
          Length = 906

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 419 aatcgcccagctctgccgatt 439
           |||||||||||||||||||||
Sbjct: 679 aatcgcccagctctgccgatt 659
to top
>gb|AC154596.2| Mus musculus BAC clone RP23-354C17 from chromosome 17, complete sequence
          Length = 208266

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 80     aaaaggaagttatgcttttga 100
              |||||||||||||||||||||
Sbjct: 126851 aaaaggaagttatgcttttga 126871
to top
>emb|AL954383.13| Zebrafish DNA sequence from clone CH211-226M11 in linkage group 17,
             complete sequence
          Length = 206679

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 378   tttgaccacatagcaggttga 398
             |||||||||||||||||||||
Sbjct: 21113 tttgaccacatagcaggttga 21133
to top
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 272      gcatccttgagagcagtctca 292
                |||||||||||||||||||||
Sbjct: 43064215 gcatccttgagagcagtctca 43064195
to top
>dbj|AP003627.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0459B04
          Length = 142475

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 272   gcatccttgagagcagtctca 292
             |||||||||||||||||||||
Sbjct: 61244 gcatccttgagagcagtctca 61224
to top
>emb|AL935174.11| Zebrafish DNA sequence from clone CH211-195B21 in linkage group 17,
              complete sequence
          Length = 195606

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 378    tttgaccacatagcaggttga 398
              |||||||||||||||||||||
Sbjct: 171542 tttgaccacatagcaggttga 171522
to top
>gb|AC163731.2| Mus musculus BAC clone RP23-380F10 from chromosome 17, complete sequence
          Length = 185201

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 80     aaaaggaagttatgcttttga 100
              |||||||||||||||||||||
Sbjct: 182649 aaaaggaagttatgcttttga 182629
to top
>gb|CP000110.1| Synechococcus sp. CC9605, complete genome
          Length = 2510659

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 491     ggcatgtcgtagttgatgaccagg 514
               ||||||||||||||||| ||||||
Sbjct: 1516311 ggcatgtcgtagttgatcaccagg 1516334
to top
>gb|BC081601.1| Danio rerio zgc:92124, mRNA (cDNA clone MGC:92124 IMAGE:7048624),
           complete cds
          Length = 3323

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 73  aaacctcaaaaggaagttat 92
           ||||||||||||||||||||
Sbjct: 615 aaacctcaaaaggaagttat 634
to top
>gb|BC079722.1| Xenopus laevis MGC82990 protein, mRNA (cDNA clone MGC:82990
           IMAGE:5516058), complete cds
          Length = 2908

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 168 ataactccagacacaatcat 187
           ||||||||||||||||||||
Sbjct: 743 ataactccagacacaatcat 724
to top
>ref|XM_370482.1| Magnaporthe grisea 70-15 chromosome II hypothetical protein
           (MG06979.4) partial mRNA
          Length = 2547

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 340 gaagtagtcctcgatctttg 359
           ||||||||||||||||||||
Sbjct: 684 gaagtagtcctcgatctttg 665
to top
>ref|XM_461305.1| Debaryomyces hansenii CBS767 hypothetical protein (DEHA0F23529g)
           partial mRNA
          Length = 888

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 20  cagatgaattctcaagaaga 39
           ||||||||||||||||||||
Sbjct: 538 cagatgaattctcaagaaga 557
to top
>gb|AC149479.1| Populus trichocarpa clone Pop1-017N13, complete sequence
          Length = 129742

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 22     gatgaattctcaagaagatt 41
              ||||||||||||||||||||
Sbjct: 102814 gatgaattctcaagaagatt 102795
to top
>gb|AC149428.1| Populus trichocarpa clone Pop1-080J15, complete sequence
          Length = 98246

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 22    gatgaattctcaagaagatt 41
             ||||||||||||||||||||
Sbjct: 78186 gatgaattctcaagaagatt 78167
to top
>gb|AC149297.1| Populus trichocarpa clone Pop1-015H07, complete sequence
          Length = 131790

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 22     gatgaattctcaagaagatt 41
              ||||||||||||||||||||
Sbjct: 121669 gatgaattctcaagaagatt 121688
to top
>gb|AC140212.2| Mus musculus BAC clone RP23-267G14 from chromosome 15, complete
             sequence
          Length = 177379

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 438   ttctgtgcaggtacacctcataat 461
             ||||||||||| ||||||||||||
Sbjct: 81912 ttctgtgcaggaacacctcataat 81889
to top
>ref|XM_749705.1| Aspergillus fumigatus Af293 eukaryotic translation initiation factor
            eIF4A (Afu3g08160) partial mRNA
          Length = 1221

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 491  ggcatgtcgtagttgatgaccagg 514
            |||| |||||||||||||||||||
Sbjct: 1025 ggcaagtcgtagttgatgaccagg 1002
to top
>ref|XM_381137.1| Gibberella zeae PH-1 chromosome 1 hypothetical protein (FG00961.1)
            partial mRNA
          Length = 2721

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 491  ggcatgtcgtagttgatgac 510
            ||||||||||||||||||||
Sbjct: 2480 ggcatgtcgtagttgatgac 2461
to top
>ref|XM_572889.1| Cryptococcus neoformans var. neoformans JEC21 ATP-dependent RNA
            helicase (CNI02850) partial mRNA
          Length = 1504

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 491  ggcatgtcgtagttgatgac 510
            ||||||||||||||||||||
Sbjct: 1113 ggcatgtcgtagttgatgac 1094
to top
>ref|XM_501186.1| Yarrowia lipolytica CLIB122, YALI0B21538g predicted mRNA
          Length = 1644

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 497  tcgtagttgatgaccaggtt 516
            ||||||||||||||||||||
Sbjct: 1319 tcgtagttgatgaccaggtt 1300
to top
>emb|CR382138.1| Debaryomyces hansenii chromosome F of strain CBS767 of Debaryomyces
               hansenii
          Length = 2336804

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 20      cagatgaattctcaagaaga 39
               ||||||||||||||||||||
Sbjct: 1867889 cagatgaattctcaagaaga 1867870
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>emb|AL161549.2|ATCHRIV49 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 49
          Length = 199075

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 57    tgtgaagaagactcgaaaac 76
             ||||||||||||||||||||
Sbjct: 44615 tgtgaagaagactcgaaaac 44634
to top
>emb|AL132958.1|ATT4D2 Arabidopsis thaliana DNA chromosome 3, BAC clone T4D2
          Length = 92611

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 47/56 (83%)
 Strand = Plus / Minus

                                                                     
Query: 407   ccttttcggccaaatcgcccagctctgccgattctgtgcaggtacacctcataatc 462
             ||||| || ||||| || |||||||| || |  ||||| |||||||||||||||||
Sbjct: 14168 cctttgcgaccaaaccggccagctctcccaaccctgtgaaggtacacctcataatc 14113
to top
>emb|AL035526.1|ATF28A21 Arabidopsis thaliana DNA chromosome 4, BAC clone F28A21 (ESSA project)
          Length = 94301

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 57    tgtgaagaagactcgaaaac 76
             ||||||||||||||||||||
Sbjct: 25334 tgtgaagaagactcgaaaac 25353
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>emb|CR631123.6| Zebrafish DNA sequence from clone DKEY-189H14 in linkage group 19,
             complete sequence
          Length = 138519

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 409   ttttcggccaaatcgcccagctct 432
             |||| |||||||||||||||||||
Sbjct: 15255 ttttaggccaaatcgcccagctct 15278
to top
>emb|CR352237.9| Zebrafish DNA sequence from clone CH211-13I11 in linkage group 11,
             complete sequence
          Length = 193648

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 409   ttttcggccaaatcgcccagctct 432
             |||| |||||||||||||||||||
Sbjct: 40041 ttttaggccaaatcgcccagctct 40064
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>ref|NM_001004543.1| Danio rerio zgc:92124 (zgc:92124), mRNA
          Length = 3323

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 73  aaacctcaaaaggaagttat 92
           ||||||||||||||||||||
Sbjct: 615 aaacctcaaaaggaagttat 634
to top
>emb|BX469906.11| Zebrafish DNA sequence from clone DKEY-127K9 in linkage group 2,
             complete sequence
          Length = 170409

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 409   ttttcggccaaatcgcccagctct 432
             ||||||||||||| ||||||||||
Sbjct: 81765 ttttcggccaaattgcccagctct 81788
to top
>emb|BX942820.7| Zebrafish DNA sequence from clone CH211-222L23 in linkage group 18,
             complete sequence
          Length = 114084

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 409   ttttcggccaaatcgcccagctct 432
             |||| |||||||||||||||||||
Sbjct: 21608 tttttggccaaatcgcccagctct 21631
to top
>gb|AC091811.7| Oryza sativa chromosome 3 BAC OSJNBa0069E14 genomic sequence, complete
             sequence
          Length = 139872

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 478   gttatacttgattggcatgt 497
             ||||||||||||||||||||
Sbjct: 50032 gttatacttgattggcatgt 50051
to top
>ref|XM_686030.1| PREDICTED: Danio rerio similar to Tyrosine-protein kinase Lyn
           (LOC573218), partial mRNA
          Length = 879

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 73  aaacctcaaaaggaagttat 92
           ||||||||||||||||||||
Sbjct: 565 aaacctcaaaaggaagttat 584
to top
>emb|BX663499.5| Zebrafish DNA sequence from clone CH211-160I2 in linkage group 2,
              complete sequence
          Length = 195369

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 409    ttttcggccaaatcgcccagctct 432
              |||| |||||||||||||||||||
Sbjct: 120219 ttttaggccaaatcgcccagctct 120242
to top
>emb|BX323874.4| Zebrafish DNA sequence from clone DKEY-104N21 in linkage group 16,
             complete sequence
          Length = 256605

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 86    aagttatgcttttgaaaata 105
             ||||||||||||||||||||
Sbjct: 51280 aagttatgcttttgaaaata 51261
to top
>gb|AE016816.1| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome III,
              complete sequence
          Length = 907057

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 489    ttggcatgtcgtagttgatgacca 512
              |||||| |||||||||||||||||
Sbjct: 802409 ttggcaggtcgtagttgatgacca 802432
to top
>emb|BX571853.4| Zebrafish DNA sequence from clone DKEY-29H14 in linkage group 16,
             complete sequence
          Length = 191052

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 86    aagttatgcttttgaaaata 105
             ||||||||||||||||||||
Sbjct: 56532 aagttatgcttttgaaaata 56513
to top
>dbj|AP003390.1| Homo sapiens genomic DNA, chromosome 11q clone:CTD-2523D13, complete
              sequences
          Length = 221091

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 603    tttccctctctgcttggtca 622
              ||||||||||||||||||||
Sbjct: 207042 tttccctctctgcttggtca 207061
to top
>dbj|AP006878.1| Thermococcus kodakarensis KOD1 DNA, complete genome
          Length = 2088737

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 452     acctcataatcaggttcatc 471
               ||||||||||||||||||||
Sbjct: 1043012 acctcataatcaggttcatc 1043031
to top
>gb|AC069333.8| Homo sapiens BAC clone RP11-634D21 from 2, complete sequence
          Length = 87829

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 578   ccatctttgaattcctgaat 597
             ||||||||||||||||||||
Sbjct: 52427 ccatctttgaattcctgaat 52446
to top
>gb|AF539527.1| Mus musculus strain C57BL/6 O-linked GlcNAc transferase gene, complete
             cds
          Length = 46067

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 238   acctatttctgagaatgttt 257
             ||||||||||||||||||||
Sbjct: 31130 acctatttctgagaatgttt 31149
to top
>emb|BX005342.14| Zebrafish DNA sequence from clone DKEY-81P7, complete sequence
          Length = 257502

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 209    caagtggcaacataatcacc 228
              ||||||||||||||||||||
Sbjct: 217035 caagtggcaacataatcacc 217054
to top
>gb|AF269968.1|AF269968 Staphylococcus epidermidis strain SR1 clone step.1036e04 genomic
           sequence
          Length = 3561

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 587 aattcctgaattactttttc 606
           ||||||||||||||||||||
Sbjct: 946 aattcctgaattactttttc 927
to top
>gb|AF269932.1|AF269932 Staphylococcus epidermidis strain SR1 clone step.1032g11 genomic
            sequence
          Length = 3488

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 587  aattcctgaattactttttc 606
            ||||||||||||||||||||
Sbjct: 1601 aattcctgaattactttttc 1620
to top
>dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome
          Length = 4659019

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 491     ggcatgtcgtagttgatgac 510
               ||||||||||||||||||||
Sbjct: 2667446 ggcatgtcgtagttgatgac 2667465
to top
>emb|BX323086.4| Zebrafish DNA sequence from clone DKEY-170I11 in linkage group 20,
              complete sequence
          Length = 183026

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 409    ttttcggccaaatcgcccagctct 432
              |||| |||||||||||||||||||
Sbjct: 178662 ttttaggccaaatcgcccagctct 178639
to top
>gb|CP000029.1| Staphylococcus epidermidis RP62A, complete genome
          Length = 2616530

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 587     aattcctgaattactttttc 606
               ||||||||||||||||||||
Sbjct: 1184603 aattcctgaattactttttc 1184622
to top
>emb|AL929006.3| Zebrafish DNA sequence from clone CH211-198G19 in linkage group 18,
            complete sequence
          Length = 193154

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 409  ttttcggccaaatcgcccagctct 432
            |||| |||||||||||||||||||
Sbjct: 4052 ttttaggccaaatcgcccagctct 4075
to top
>ref|NM_209008.1| Eremothecium gossypii ACR253Cp (ACR253C), mRNA
          Length = 1191

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 489  ttggcatgtcgtagttgatgacca 512
            |||||| |||||||||||||||||
Sbjct: 1018 ttggcaggtcgtagttgatgacca 995
to top
>emb|BX255893.5| Zebrafish DNA sequence from clone CH211-272H10 in linkage group 4,
             complete sequence
          Length = 99176

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 409   ttttcggccaaatcgcccagctct 432
             |||| |||||||||||||||||||
Sbjct: 80696 ttttaggccaaatcgcccagctct 80719
to top
>emb|CR854847.7| Zebrafish DNA sequence from clone DKEY-266L9 in linkage group 11,
             complete sequence
          Length = 48855

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 409   ttttcggccaaatcgcccagctct 432
             |||| |||||||||||||||||||
Sbjct: 16036 ttttaggccaaatcgcccagctct 16013
to top
>emb|BX323850.16| Zebrafish DNA sequence from clone DKEY-156A5 in linkage group 11,
             complete sequence
          Length = 156989

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 409   ttttcggccaaatcgcccagctct 432
             |||| |||||||||||||||||||
Sbjct: 76922 ttttaggccaaatcgcccagctct 76945
to top
>emb|CR377211.7| Zebrafish DNA sequence from clone DKEYP-13A3 in linkage group 2,
             complete sequence
          Length = 186342

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 409   ttttcggccaaatcgcccagctct 432
             ||||||||||||| ||||||||||
Sbjct: 48504 ttttcggccaaattgcccagctct 48527
to top
>dbj|AP001994.4| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-215D10, complete
             sequence
          Length = 167376

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 603   tttccctctctgcttggtca 622
             ||||||||||||||||||||
Sbjct: 83756 tttccctctctgcttggtca 83775
to top
>emb|CR382128.1| Yarrowia lipolytica chromosome B of strain CLIB122 of Yarrowia lipolytica
          Length = 3066374

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 497     tcgtagttgatgaccaggtt 516
               ||||||||||||||||||||
Sbjct: 2825432 tcgtagttgatgaccaggtt 2825451
to top
>emb|AL806534.3| Mouse DNA sequence from clone RP23-334A11 on chromosome X, complete
              sequence
          Length = 130689

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 238    acctatttctgagaatgttt 257
              ||||||||||||||||||||
Sbjct: 128580 acctatttctgagaatgttt 128599


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,603,578
Number of Sequences: 3902068
Number of extensions: 5603578
Number of successful extensions: 107059
Number of sequences better than 10.0: 71
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 106659
Number of HSP's gapped (non-prelim): 398
length of query: 655
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 632
effective length of database: 17,143,297,704
effective search space: 10834564148928
effective search space used: 10834564148928
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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