Clone Information

BLAST Search Result

Clone Name	rbags25f19
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	gb\|AF031231.1\|AF031231 Triticum aestivum S222 (S222) mRNA, compl...	327	2e-86
2	ref\|XM_466452.1\| Oryza sativa (japonica cultivar-group), mRNA	54	5e-04
3	ref\|XM_506842.1\| PREDICTED Oryza sativa (japonica cultivar-group...	54	5e-04
4	dbj\|AP008208.1\| Oryza sativa (japonica cultivar-group) genomic D...	54	5e-04
5	dbj\|AP005643.3\| Oryza sativa (japonica cultivar-group) genomic D...	54	5e-04
6	dbj\|AK100542.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	54	5e-04
7	dbj\|AK100170.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	54	5e-04
8	ref\|XM_472836.1\| Oryza sativa (japonica cultivar-group), predic...	48	0.028
9	emb\|AL606447.3\|OSJN00011 Oryza sativa genomic DNA, chromosome 4,...	48	0.028
10	dbj\|AP008210.1\| Oryza sativa (japonica cultivar-group) genomic D...	48	0.028
11	dbj\|AK070339.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	48	0.028
12	dbj\|AK070336.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	48	0.028
13	gb\|AC164568.1\| Mus musculus BAC clone RP23-7A23 from chromosome ...	46	0.11
14	gb\|AC154664.2\| Mus musculus BAC clone RP24-284G3 from chromosome...	46	0.11
15	gb\|AC005611.1\| Homo sapiens chromosome 5, BAC clone 259m9 (LBNL ...	44	0.44
16	gb\|BC017066.1\| Homo sapiens hypothetical protein MGC12103, mRNA ...	44	0.44
17	emb\|AJ515158.1\|HSA515158 Homo sapiens mRNA for hypothetical prot...	44	0.44
18	emb\|AJ441110.3\|HSA441110 Homo sapiens mRNA for hypothetical prot...	44	0.44
19	emb\|AJ515429.1\|HSA515429 Homo sapiens mRNA for hypothetical prot...	44	0.44
20	emb\|AJ515428.1\|HSA515428 Homo sapiens mRNA for hypothetical prot...	44	0.44
21	emb\|AJ496322.1\|HSA496322 Homo sapiens partial mRNA for hypotheti...	44	0.44
22	emb\|AJ427339.1\|HSA427339 Homo sapiens mRNA for hypothetical prot...	44	0.44
23	emb\|AL832600.2\|HSM803910 Homo sapiens mRNA; cDNA DKFZp451C1217 (...	44	0.44
24	gb\|AC010424.9\| Homo sapiens chromosome 5 clone CTD-2195M15, comp...	44	0.44
25	dbj\|AK057437.1\| Homo sapiens cDNA FLJ32875 fis, clone TESTI2004031	44	0.44
26	ref\|NM_130809.2\| Homo sapiens hypothetical protein MGC12103 (LOC...	44	0.44
27	emb\|AL832056.1\|HSM803363 Homo sapiens mRNA; cDNA DKFZp313P0510 (...	44	0.44
28	emb\|AL831963.1\|HSM803269 Homo sapiens mRNA; cDNA DKFZp451D162 (f...	44	0.44
29	dbj\|AK090486.1\| Homo sapiens mRNA for FLJ00410 protein	44	0.44
30	gb\|CP000148.1\| Geobacter metallireducens GS-15, complete genome	42	1.7
31	gb\|AC165950.1\| Mus musculus BAC clone RP24-235L20 from chromosom...	42	1.7
32	dbj\|BA000040.2\| Bradyrhizobium japonicum USDA 110 DNA, complete ...	42	1.7
33	emb\|AL590328.2\|CNS07EG5 Human chromosome 14 DNA sequence BAC R-8...	42	1.7
34	emb\|AL646053.1\| Ralstonia solanacearum GMI1000 megaplasmid compl...	42	1.7
35	emb\|AL121839.3\|CNS01DSQ Human chromosome 14 DNA sequence BAC R-7...	42	1.7
36	gb\|AE016825.1\| Chromobacterium violaceum ATCC 12472, complete ge...	42	1.7
37	gb\|AC154216.1\| Mus musculus BAC clone RP24-354I21 from 13, compl...	42	1.7
38	gb\|AY842481.1\| Homo sapiens growth associated protein 43 (GAP43)...	40	6.9
39	gb\|AE010334.1\| Methanopyrus kandleri AV19 section 33 of 157 of t...	40	6.9
40	gb\|AC132485.2\| Oryza sativa (japonica cultivar-group) chromosome...	40	6.9
41	gb\|AC183547.2\| Pan troglodytes BAC clone CH251-213F19 from chrom...	40	6.9
42	gb\|AF024498.1\| Caenorhabditis elegans cosmid F40H7, complete seq...	40	6.9
43	emb\|AL450324.10\| Human DNA sequence from clone RP11-307F22 on ch...	40	6.9
44	emb\|AL354735.14\| Human DNA sequence from clone RP11-738I14 on ch...	40	6.9
45	emb\|AL161532.2\|ATCHRIV32 Arabidopsis thaliana DNA chromosome 4, ...	40	6.9
46	emb\|AL078606.1\|ATT26M18 Arabidopsis thaliana DNA chromosome 4, B...	40	6.9
47	emb\|AL049500.1\|ATT5C23 Arabidopsis thaliana DNA chromosome 4, BA...	40	6.9
48	emb\|BX901956.4\| Zebrafish DNA sequence from clone CH211-284C12 i...	40	6.9
49	gb\|AC182636.3\| Pan troglodytes BAC clone CH251-519F5 from chromo...	40	6.9
50	gb\|AC182427.3\| Pan troglodytes BAC clone CH251-692F19 from chrom...	40	6.9
51	gb\|AC092468.9\| Homo sapiens 3 BAC RP11-326J18 (Roswell Park Canc...	40	6.9
52	gb\|AC099501.2\| Homo sapiens chromosome 5 clone RP11-20O13, compl...	40	6.9
53	gb\|AC096915.2\| Homo sapiens chromosome 3 clone RP11-24H1, comple...	40	6.9
54	dbj\|AP008211.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	6.9
55	gb\|AC154854.2\| Mus musculus BAC clone RP23-23O4 from chromosome ...	40	6.9
56	gb\|AC099778.2\| Homo sapiens chromosome 3 clone RP11-708J19, comp...	40	6.9
57	emb\|CR376851.5\| Zebrafish DNA sequence from clone DKEY-48N5 in l...	40	6.9
58	dbj\|AK062293.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	40	6.9
59	emb\|AL139317.5\|CNS01DXI Human chromosome 14 DNA sequence BAC R-5...	40	6.9
60	emb\|AL663067.14\| Mouse DNA sequence from clone RP23-23G3 on chro...	40	6.9
61	gb\|M58579.1\|RABACE Rabbit angiotensin-converting enzyme (ACE-P) ...	40	6.9
62	gb\|L23202.1\|RABANTENIS Rabbit angiotensin-converting isozyme gene	40	6.9

>gb|AF031231.1|AF031231 Triticum aestivum S222 (S222) mRNA, complete cds
          Length = 1748

 Score =  327 bits (165), Expect = 2e-86
 Identities = 202/213 (94%), Gaps = 1/213 (0%)
 Strand = Plus / Minus

                                                                        
Query: 278  ggcggcgtgggagggcgccggacctgtggtgttgctcacaggaggaaggggcggctccgc 337
            |||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||
Sbjct: 1488 ggcggcgtgggagggcgctggagctgtggtgttgctcacaggaggaaggggcggctccgc 1429

                                                                        
Query: 338  cacgtccgagtccgtcaacaccggcattggggccattgctggtggcaatgctgctttatc 397
            |||||| ||| | ||||||||||||  |||||||||||||||||||||||||||||||||
Sbjct: 1428 cacgtcggagacagtcaacaccggctctggggccattgctggtggcaatgctgctttatc 1369

                                                                        
Query: 398  cggtatgaccccaaggaggccgccgcgctggggaggcagcatgtagtagggcgtcttgtc 457
            | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 1368 ctgtatgaccccaaggaggccgccgcgctggggaggcagcatgtagtagggcgtcttgt- 1310

                                             
Query: 458  ccccatcttcctgcacgagttcagtttgtatct 490
            |||||| |||||||||||||||| |||||||||
Sbjct: 1309 ccccatgttcctgcacgagttcaatttgtatct 1277



 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 84/97 (86%), Gaps = 6/97 (6%)
 Strand = Plus / Minus

                                                                        
Query: 89   atccaggcatgaatcatcattcaacctcaacgtccaccacccccaaatacttgtacagcc 148
            ||||||||||||||||||||| ||||||||| ||||||| ||||||||      | | ||
Sbjct: 1685 atccaggcatgaatcatcatttaacctcaacatccacca-ccccaaat-----gagaccc 1632

                                                 
Query: 149  aaaccaaaaggaaaaatgaatcgctcgctacatagaa 185
            ||| |||||||||||| ||||||||||||||||||||
Sbjct: 1631 aaagcaaaaggaaaaacgaatcgctcgctacatagaa 1595



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 32/33 (96%)
 Strand = Plus / Minus

                                             
Query: 214  ctcagataagcagagaagcgcatagcaccagca 246
            |||||||||||||||||||||||||||| ||||
Sbjct: 1558 ctcagataagcagagaagcgcatagcactagca 1526

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>ref|XM_466452.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2783

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 45/51 (88%)
 Strand = Plus / Minus

                                                               
Query: 333  tccgccacgtccgagtccgtcaacaccggcattggggccattgctggtggc 383
            ||||| ||||| ||||||||||| |  |||||||| |||||||||||||||
Sbjct: 2383 tccgcgacgtcggagtccgtcaagagaggcattggcgccattgctggtggc 2333



 Score = 50.1 bits (25), Expect = 0.007
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                     
Query: 224  cagagaagcgcatagcaccagcagc 248
            |||||||||||||||||||||||||
Sbjct: 2501 cagagaagcgcatagcaccagcagc 2477

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>ref|XM_506842.1| PREDICTED Oryza sativa (japonica cultivar-group), OSJNBb0046O12.21
            mRNA
          Length = 2827

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 45/51 (88%)
 Strand = Plus / Minus

                                                               
Query: 333  tccgccacgtccgagtccgtcaacaccggcattggggccattgctggtggc 383
            ||||| ||||| ||||||||||| |  |||||||| |||||||||||||||
Sbjct: 2395 tccgcgacgtcggagtccgtcaagagaggcattggcgccattgctggtggc 2345



 Score = 50.1 bits (25), Expect = 0.007
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                     
Query: 224  cagagaagcgcatagcaccagcagc 248
            |||||||||||||||||||||||||
Sbjct: 2513 cagagaagcgcatagcaccagcagc 2489

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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 45/51 (88%)
 Strand = Plus / Minus

                                                                   
Query: 333      tccgccacgtccgagtccgtcaacaccggcattggggccattgctggtggc 383
                ||||| ||||| ||||||||||| |  |||||||| |||||||||||||||
Sbjct: 22711229 tccgcgacgtcggagtccgtcaagagaggcattggcgccattgctggtggc 22711179



 Score = 50.1 bits (25), Expect = 0.007
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                         
Query: 224      cagagaagcgcatagcaccagcagc 248
                |||||||||||||||||||||||||
Sbjct: 22711347 cagagaagcgcatagcaccagcagc 22711323

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>dbj|AP005643.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OSJNBb0046O12
          Length = 128223

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 45/51 (88%)
 Strand = Plus / Minus

                                                                
Query: 333   tccgccacgtccgagtccgtcaacaccggcattggggccattgctggtggc 383
             ||||| ||||| ||||||||||| |  |||||||| |||||||||||||||
Sbjct: 70025 tccgcgacgtcggagtccgtcaagagaggcattggcgccattgctggtggc 69975



 Score = 50.1 bits (25), Expect = 0.007
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                      
Query: 224   cagagaagcgcatagcaccagcagc 248
             |||||||||||||||||||||||||
Sbjct: 70143 cagagaagcgcatagcaccagcagc 70119

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>dbj|AK100542.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023102L08, full
            insert sequence
          Length = 2782

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 45/51 (88%)
 Strand = Plus / Minus

                                                               
Query: 333  tccgccacgtccgagtccgtcaacaccggcattggggccattgctggtggc 383
            ||||| ||||| ||||||||||| |  |||||||| |||||||||||||||
Sbjct: 2382 tccgcgacgtcggagtccgtcaagagaggcattggcgccattgctggtggc 2332



 Score = 50.1 bits (25), Expect = 0.007
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                     
Query: 224  cagagaagcgcatagcaccagcagc 248
            |||||||||||||||||||||||||
Sbjct: 2500 cagagaagcgcatagcaccagcagc 2476

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>dbj|AK100170.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023025E23, full
            insert sequence
          Length = 2824

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 45/51 (88%)
 Strand = Plus / Minus

                                                               
Query: 333  tccgccacgtccgagtccgtcaacaccggcattggggccattgctggtggc 383
            ||||| ||||| ||||||||||| |  |||||||| |||||||||||||||
Sbjct: 2392 tccgcgacgtcggagtccgtcaagagaggcattggcgccattgctggtggc 2342



 Score = 50.1 bits (25), Expect = 0.007
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                     
Query: 224  cagagaagcgcatagcaccagcagc 248
            |||||||||||||||||||||||||
Sbjct: 2510 cagagaagcgcatagcaccagcagc 2486

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>ref|XM_472836.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2223

 Score = 48.1 bits (24), Expect = 0.028
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                        
Query: 327  ggcggctccgccacgtccgagtccgtca 354
            ||||||||||||||||||||| ||||||
Sbjct: 2111 ggcggctccgccacgtccgagcccgtca 2084

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>emb|AL606447.3|OSJN00011 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0022F23,
             complete sequence
          Length = 130273

 Score = 48.1 bits (24), Expect = 0.028
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                         
Query: 327   ggcggctccgccacgtccgagtccgtca 354
             ||||||||||||||||||||| ||||||
Sbjct: 28659 ggcggctccgccacgtccgagcccgtca 28632

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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 48.1 bits (24), Expect = 0.028
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                            
Query: 327      ggcggctccgccacgtccgagtccgtca 354
                ||||||||||||||||||||| ||||||
Sbjct: 23585978 ggcggctccgccacgtccgagcccgtca 23585951

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>dbj|AK070339.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023048K03, full
            insert sequence
          Length = 2493

 Score = 48.1 bits (24), Expect = 0.028
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                        
Query: 327  ggcggctccgccacgtccgagtccgtca 354
            ||||||||||||||||||||| ||||||
Sbjct: 2229 ggcggctccgccacgtccgagcccgtca 2202

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>dbj|AK070336.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023047B14, full
            insert sequence
          Length = 1581

 Score = 48.1 bits (24), Expect = 0.028
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                        
Query: 327  ggcggctccgccacgtccgagtccgtca 354
            ||||||||||||||||||||| ||||||
Sbjct: 1204 ggcggctccgccacgtccgagcccgtca 1177

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>gb|AC164568.1| Mus musculus BAC clone RP23-7A23 from chromosome 14, complete sequence
          Length = 227675

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 192   gcagaaaagaatggtcctcagtc 214
             |||||||||||||||||||||||
Sbjct: 19829 gcagaaaagaatggtcctcagtc 19851

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>gb|AC154664.2| Mus musculus BAC clone RP24-284G3 from chromosome 14, complete sequence
          Length = 157658

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 192   gcagaaaagaatggtcctcagtc 214
             |||||||||||||||||||||||
Sbjct: 38640 gcagaaaagaatggtcctcagtc 38618

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>gb|AC005611.1| Homo sapiens chromosome 5, BAC clone 259m9 (LBNL H193), complete
             sequence
          Length = 107190

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 312   ctcacaggaggaaggggcggct 333
             ||||||||||||||||||||||
Sbjct: 33192 ctcacaggaggaaggggcggct 33171

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>gb|BC017066.1| Homo sapiens hypothetical protein MGC12103, mRNA (cDNA clone
           MGC:9628 IMAGE:3913311), complete cds
          Length = 1702

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 312 ctcacaggaggaaggggcggct 333
           ||||||||||||||||||||||
Sbjct: 325 ctcacaggaggaaggggcggct 304

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>emb|AJ515158.1|HSA515158 Homo sapiens mRNA for hypothetical protein (ORF1), splice variant 4
          Length = 2750

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 312 ctcacaggaggaaggggcggct 333
           ||||||||||||||||||||||
Sbjct: 341 ctcacaggaggaaggggcggct 320

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>emb|AJ441110.3|HSA441110 Homo sapiens mRNA for hypothetical protein, splice variant 1
          Length = 2724

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 312 ctcacaggaggaaggggcggct 333
           ||||||||||||||||||||||
Sbjct: 341 ctcacaggaggaaggggcggct 320

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>emb|AJ515429.1|HSA515429 Homo sapiens mRNA for hypothetical protein (ORF1), splice variant 6
          Length = 4732

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 312 ctcacaggaggaaggggcggct 333
           ||||||||||||||||||||||
Sbjct: 341 ctcacaggaggaaggggcggct 320

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>emb|AJ515428.1|HSA515428 Homo sapiens mRNA for hypothetical protein (ORF1), splice variant 5
          Length = 4685

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 312 ctcacaggaggaaggggcggct 333
           ||||||||||||||||||||||
Sbjct: 341 ctcacaggaggaaggggcggct 320

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>emb|AJ496322.1|HSA496322 Homo sapiens partial mRNA for hypothetical protein, splice variant
           2
          Length = 1189

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 312 ctcacaggaggaaggggcggct 333
           ||||||||||||||||||||||
Sbjct: 341 ctcacaggaggaaggggcggct 320

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>emb|AJ427339.1|HSA427339 Homo sapiens mRNA for hypothetical protein, splice variant 3
          Length = 1895

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 312 ctcacaggaggaaggggcggct 333
           ||||||||||||||||||||||
Sbjct: 341 ctcacaggaggaaggggcggct 320

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>emb|AL832600.2|HSM803910 Homo sapiens mRNA; cDNA DKFZp451C1217 (from clone DKFZp451C1217)
          Length = 5502

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 312 ctcacaggaggaaggggcggct 333
           ||||||||||||||||||||||
Sbjct: 347 ctcacaggaggaaggggcggct 326

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>gb|AC010424.9| Homo sapiens chromosome 5 clone CTD-2195M15, complete sequence
          Length = 192282

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 312   ctcacaggaggaaggggcggct 333
             ||||||||||||||||||||||
Sbjct: 93545 ctcacaggaggaaggggcggct 93524

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>dbj|AK057437.1| Homo sapiens cDNA FLJ32875 fis, clone TESTI2004031
          Length = 1687

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 312 ctcacaggaggaaggggcggct 333
           ||||||||||||||||||||||
Sbjct: 325 ctcacaggaggaaggggcggct 304

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>ref|NM_130809.2| Homo sapiens hypothetical protein MGC12103 (LOC133619), mRNA
          Length = 4732

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 312 ctcacaggaggaaggggcggct 333
           ||||||||||||||||||||||
Sbjct: 341 ctcacaggaggaaggggcggct 320

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>emb|AL832056.1|HSM803363 Homo sapiens mRNA; cDNA DKFZp313P0510 (from clone DKFZp313P0510)
          Length = 4689

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 312 ctcacaggaggaaggggcggct 333
           ||||||||||||||||||||||
Sbjct: 351 ctcacaggaggaaggggcggct 330

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>emb|AL831963.1|HSM803269 Homo sapiens mRNA; cDNA DKFZp451D162 (from clone DKFZp451D162);
           complete cds
          Length = 4723

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 312 ctcacaggaggaaggggcggct 333
           ||||||||||||||||||||||
Sbjct: 350 ctcacaggaggaaggggcggct 329

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>dbj|AK090486.1| Homo sapiens mRNA for FLJ00410 protein
          Length = 4515

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 312 ctcacaggaggaaggggcggct 333
           ||||||||||||||||||||||
Sbjct: 214 ctcacaggaggaaggggcggct 193

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>gb|CP000148.1| Geobacter metallireducens GS-15, complete genome
          Length = 3997420

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 243   agcagcatcacgccggcgtccgtgc 267
             ||||||||||||||| |||||||||
Sbjct: 94277 agcagcatcacgccgtcgtccgtgc 94301

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>gb|AC165950.1| Mus musculus BAC clone RP24-235L20 from chromosome 13, complete sequence
          Length = 178927

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 39     gtatttaccagaatgttttaa 59
              |||||||||||||||||||||
Sbjct: 164089 gtatttaccagaatgttttaa 164109

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>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 237     agcaccagcagcatcacgccg 257
               |||||||||||||||||||||
Sbjct: 4214913 agcaccagcagcatcacgccg 4214893

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>emb|AL590328.2|CNS07EG5 Human chromosome 14 DNA sequence BAC R-818K5 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 175210

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 21     agacatagagtagtactagta 41
              |||||||||||||||||||||
Sbjct: 155089 agacatagagtagtactagta 155109

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>emb|AL646053.1| Ralstonia solanacearum GMI1000 megaplasmid complete sequence
          Length = 2094509

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 239     caccagcagcatcacgccggc 259
               |||||||||||||||||||||
Sbjct: 1756855 caccagcagcatcacgccggc 1756875

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>emb|AL121839.3|CNS01DSQ Human chromosome 14 DNA sequence BAC R-747H7 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 200853

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 21    agacatagagtagtactagta 41
             |||||||||||||||||||||
Sbjct: 51071 agacatagagtagtactagta 51091

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>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome
          Length = 4751080

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 241     ccagcagcatcacgccggcgt 261
               |||||||||||||||||||||
Sbjct: 2767004 ccagcagcatcacgccggcgt 2767024

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>gb|AC154216.1| Mus musculus BAC clone RP24-354I21 from 13, complete sequence
          Length = 209934

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 39    gtatttaccagaatgttttaa 59
             |||||||||||||||||||||
Sbjct: 30348 gtatttaccagaatgttttaa 30368

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>gb|AY842481.1| Homo sapiens growth associated protein 43 (GAP43) gene, complete cds
          Length = 100848

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 150   aaccaaaaggaaaaatgaat 169
             ||||||||||||||||||||
Sbjct: 11075 aaccaaaaggaaaaatgaat 11056

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>gb|AE010334.1| Methanopyrus kandleri AV19 section 33 of 157 of the complete genome
          Length = 7181

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 412  ggaggccgccgcgctgggga 431
            ||||||||||||||||||||
Sbjct: 4547 ggaggccgccgcgctgggga 4528

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>gb|AC132485.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0022D06,
             complete sequence
          Length = 142068

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 276   gaggcggcgtgggagggcgc 295
             ||||||||||||||||||||
Sbjct: 78914 gaggcggcgtgggagggcgc 78933

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>gb|AC183547.2| Pan troglodytes BAC clone CH251-213F19 from chromosome 6, complete
             sequence
          Length = 190731

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 149   aaaccaaaaggaaaaatgaa 168
             ||||||||||||||||||||
Sbjct: 53820 aaaccaaaaggaaaaatgaa 53801

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>gb|AF024498.1| Caenorhabditis elegans cosmid F40H7, complete sequence
          Length = 22795

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 148  caaaccaaaaggaaaaatga 167
            ||||||||||||||||||||
Sbjct: 4284 caaaccaaaaggaaaaatga 4265

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>emb|AL450324.10| Human DNA sequence from clone RP11-307F22 on chromosome 6, complete
             sequence
          Length = 101846

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 149   aaaccaaaaggaaaaatgaa 168
             ||||||||||||||||||||
Sbjct: 72119 aaaccaaaaggaaaaatgaa 72100

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>emb|AL354735.14| Human DNA sequence from clone RP11-738I14 on chromosome 9 Contains the 3'
              end of the DDX31 gene for DEAD/H box polypeptide 31, the
              BARHL1 gene for BarH-like 1 (Drosophila) protein, two novel
              genes and three CpG islands, complete sequence
          Length = 189821

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 282    gcgtgggagggcgccggacc 301
              ||||||||||||||||||||
Sbjct: 104620 gcgtgggagggcgccggacc 104639

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>emb|AL161532.2|ATCHRIV32 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 32
          Length = 198788

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 37     tagtatttaccagaatgttt 56
              ||||||||||||||||||||
Sbjct: 142364 tagtatttaccagaatgttt 142345

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>emb|AL078606.1|ATT26M18 Arabidopsis thaliana DNA chromosome 4, BAC clone T26M18 (ESSA
            project)
          Length = 90824

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 37   tagtatttaccagaatgttt 56
            ||||||||||||||||||||
Sbjct: 5064 tagtatttaccagaatgttt 5045

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>emb|AL049500.1|ATT5C23 Arabidopsis thaliana DNA chromosome 4, BAC clone T5C23 (ESSA project)
          Length = 87104

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 37    tagtatttaccagaatgttt 56
             ||||||||||||||||||||
Sbjct: 85200 tagtatttaccagaatgttt 85181

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>emb|BX901956.4| Zebrafish DNA sequence from clone CH211-284C12 in linkage group 3,
             complete sequence
          Length = 197042

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 40    tatttaccagaatgttttaa 59
             ||||||||||||||||||||
Sbjct: 32606 tatttaccagaatgttttaa 32625

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>gb|AC182636.3| Pan troglodytes BAC clone CH251-519F5 from chromosome 6, complete
             sequence
          Length = 197430

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 149   aaaccaaaaggaaaaatgaa 168
             ||||||||||||||||||||
Sbjct: 86415 aaaccaaaaggaaaaatgaa 86396

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>gb|AC182427.3| Pan troglodytes BAC clone CH251-692F19 from chromosome 6, complete
              sequence
          Length = 168190

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 149    aaaccaaaaggaaaaatgaa 168
              ||||||||||||||||||||
Sbjct: 158669 aaaccaaaaggaaaaatgaa 158650

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>gb|AC092468.9| Homo sapiens 3 BAC RP11-326J18 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 114428

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 150   aaccaaaaggaaaaatgaat 169
             ||||||||||||||||||||
Sbjct: 42351 aaccaaaaggaaaaatgaat 42370

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>gb|AC099501.2| Homo sapiens chromosome 5 clone RP11-20O13, complete sequence
          Length = 43953

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 449   cgtcttgtcccccatcttcc 468
             ||||||||||||||||||||
Sbjct: 32535 cgtcttgtcccccatcttcc 32516

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>gb|AC096915.2| Homo sapiens chromosome 3 clone RP11-24H1, complete sequence
          Length = 170162

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 370    ccattgctggtggcaatgctgctt 393
              ||||| ||||||||||||||||||
Sbjct: 108452 ccatttctggtggcaatgctgctt 108429

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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 276      gaggcggcgtgggagggcgc 295
                ||||||||||||||||||||
Sbjct: 25344310 gaggcggcgtgggagggcgc 25344329

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>gb|AC154854.2| Mus musculus BAC clone RP23-23O4 from chromosome 16, complete sequence
          Length = 209970

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 22     gacatagagtagtactagta 41
              ||||||||||||||||||||
Sbjct: 128147 gacatagagtagtactagta 128128

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>gb|AC099778.2| Homo sapiens chromosome 3 clone RP11-708J19, complete sequence
          Length = 212775

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 137   acttgtacagccaaaccaaaagga 160
             ||||||||||||||||| ||||||
Sbjct: 84681 acttgtacagccaaacccaaagga 84658

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>emb|CR376851.5| Zebrafish DNA sequence from clone DKEY-48N5 in linkage group 22,
             complete sequence
          Length = 51574

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 41    atttaccagaatgttttaactact 64
             |||||||| |||||||||||||||
Sbjct: 40672 atttaccaaaatgttttaactact 40649

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>dbj|AK062293.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-100-F01, full
            insert sequence
          Length = 2395

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 276  gaggcggcgtgggagggcgc 295
            ||||||||||||||||||||
Sbjct: 1316 gaggcggcgtgggagggcgc 1335

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>emb|AL139317.5|CNS01DXI Human chromosome 14 DNA sequence BAC R-589M4 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 190648

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 121    tccaccacccccaaatactt 140
              ||||||||||||||||||||
Sbjct: 133014 tccaccacccccaaatactt 133033

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>emb|AL663067.14| Mouse DNA sequence from clone RP23-23G3 on chromosome 2, complete
            sequence
          Length = 193057

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 304  tggtgttgctcacaggagga 323
            ||||||||||||||||||||
Sbjct: 6173 tggtgttgctcacaggagga 6192

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>gb|M58579.1|RABACE Rabbit angiotensin-converting enzyme (ACE-P) gene, 5' end
          Length = 583

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 314 cacaggaggaaggggcggct 333
           ||||||||||||||||||||
Sbjct: 97  cacaggaggaaggggcggct 116

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>gb|L23202.1|RABANTENIS Rabbit angiotensin-converting isozyme gene
          Length = 1232

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 314  cacaggaggaaggggcggct 333
            ||||||||||||||||||||
Sbjct: 1008 cacaggaggaaggggcggct 1027


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,718,280
Number of Sequences: 3902068
Number of extensions: 4718280
Number of successful extensions: 91779
Number of sequences better than 10.0: 62
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 91367
Number of HSP's gapped (non-prelim): 411
length of query: 506
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 484
effective length of database: 17,147,199,772
effective search space: 8299244689648
effective search space used: 8299244689648
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result