ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags25f17
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1TDP_DROME (Q24318) Transcription factor dp 31 0.88
2GPR39_HUMAN (O43194) Probable G-protein coupled receptor 39 28 4.3
3PROML_DROME (P82295) Prominin-like protein 28 7.4
4GLMU_PROMT (Q46LT9) Bifunctional protein glmU [Includes: UDP-N-a... 28 7.4
5DNJC5_HUMAN (Q9H3Z4) DnaJ homolog subfamily C member 5 (Cysteine... 27 9.7

>TDP_DROME (Q24318) Transcription factor dp|
          Length = 445

 Score = 30.8 bits (68), Expect = 0.88
 Identities = 19/63 (30%), Positives = 30/63 (47%)
 Frame = -2

Query: 237 LVEIGKAWDGEGAECKPSHDISAICLPV*AHQYTRFVCSL*NDQMPGEFQFRASFSLRHQ 58
           LVE  K  + +G    P+  I    + V  H+ T+  CS+ ND+    F+F  +F +   
Sbjct: 286 LVERNKRNESQGVVPSPNASIQLPFIIVNTHKSTKINCSVTNDKSEYIFKFDKTFEMHDD 345

Query: 57  IYV 49
           I V
Sbjct: 346 IEV 348



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>GPR39_HUMAN (O43194) Probable G-protein coupled receptor 39|
          Length = 453

 Score = 28.5 bits (62), Expect = 4.3
 Identities = 22/73 (30%), Positives = 37/73 (50%)
 Frame = +1

Query: 28  NQARIRVNINLMSQRKGSTKLKFTRHLVIL**TDKSSVLMGLDRQAYC*YIM*RLTLCSF 207
           N A IRV    + Q+KG  + + T H+V L  +D    L+G+  + Y   I   LT  S+
Sbjct: 48  NSATIRVT--QVLQKKGYLQKEVTDHMVSLACSDILVFLIGMPMEFYS-IIWNPLTTSSY 104

Query: 208 TIPCLAYFYKYSS 246
           T+ C  + + + +
Sbjct: 105 TLSCKLHTFLFEA 117



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>PROML_DROME (P82295) Prominin-like protein|
          Length = 1013

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = -1

Query: 289 LLFVYIVLVTCYPCHCCTCRNRQG 218
           L+ V   +  CY C CC  R RQG
Sbjct: 176 LIIVIPFIAVCYCCFCCCRRCRQG 199



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>GLMU_PROMT (Q46LT9) Bifunctional protein glmU [Includes:|
           UDP-N-acetylglucosamine pyrophosphorylase (EC 2.7.7.23)
           (N-acetylglucosamine-1-phosphate uridyltransferase);
           Glucosamine-1-phosphate N-acetyltransferase (EC
           2.3.1.157)]
          Length = 446

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +3

Query: 72  KRKHETEIHQAFGHSIMNRQIECTDGLRPAGILLI 176
           K K    +H   G S+++R + CT GL+P   L++
Sbjct: 16  KSKLPKVLHPLAGKSLIDRVLSCTHGLKPNRRLIV 50



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>DNJC5_HUMAN (Q9H3Z4) DnaJ homolog subfamily C member 5 (Cysteine string|
           protein) (CSP)
          Length = 198

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -1

Query: 286 LFVYIVLVTCYPCHCCTC 233
           LFV+  L+TC  C CC C
Sbjct: 109 LFVFCGLLTCCYCCCCLC 126


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,372,031
Number of Sequences: 219361
Number of extensions: 870995
Number of successful extensions: 2185
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2183
length of database: 80,573,946
effective HSP length: 87
effective length of database: 61,489,539
effective search space used: 1475748936
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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