ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags25f13
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1KE4_PONPY (Q5RFD5) Zinc transporter SLC39A7 (Solute carrier fami... 30 1.3
2KE4_HUMAN (Q92504) Zinc transporter SLC39A7 (Solute carrier fami... 30 1.3
3ZIP1_ARATH (O81123) Zinc transporter 1 precursor (ZRT/IRT-like p... 29 2.9
4SRCH_HUMAN (P23327) Sarcoplasmic reticulum histidine-rich calciu... 29 2.9
5HNF1B_XENLA (Q91910) Hepatocyte nuclear factor 1-beta (HNF-1B) (... 29 2.9
6KE4_MOUSE (Q31125) Zinc transporter SLC39A7 (Solute carrier fami... 29 3.8
7ENGC_PROMA (Q7VEJ4) Probable GTPase engC (EC 3.6.1.-) 29 3.8
8KE4_CANFA (Q5TJF6) Zinc transporter SLC39A7 (Solute carrier fami... 28 5.0
9BUD3_ASHGO (Q9HF61) Bud site selection protein BUD3 28 6.5

>KE4_PONPY (Q5RFD5) Zinc transporter SLC39A7 (Solute carrier family 39 member|
           7) (Histidine-rich membrane protein Ke4)
          Length = 469

 Score = 30.4 bits (67), Expect = 1.3
 Identities = 14/27 (51%), Positives = 14/27 (51%)
 Frame = +3

Query: 24  HIHSHRQHSHTSMFSRAMLVHEHGHTH 104
           H HSHR HSH          H HGHTH
Sbjct: 43  HGHSHR-HSHEDFHHGHSHAHGHGHTH 68



 Score = 28.1 bits (61), Expect = 6.5
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +3

Query: 9   YXAYVHIHSHRQHSHTSMFSRAMLVHEHGHTH 104
           +  + H H H  H+H S++      H+HGH+H
Sbjct: 55  HHGHSHAHGHG-HTHESIWHGHTHGHDHGHSH 85



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>KE4_HUMAN (Q92504) Zinc transporter SLC39A7 (Solute carrier family 39 member|
           7) (Histidine-rich membrane protein Ke4)
          Length = 469

 Score = 30.4 bits (67), Expect = 1.3
 Identities = 14/27 (51%), Positives = 14/27 (51%)
 Frame = +3

Query: 24  HIHSHRQHSHTSMFSRAMLVHEHGHTH 104
           H HSHR HSH          H HGHTH
Sbjct: 43  HGHSHR-HSHEDFHHGHSHAHGHGHTH 68



 Score = 28.1 bits (61), Expect = 6.5
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +3

Query: 9   YXAYVHIHSHRQHSHTSMFSRAMLVHEHGHTH 104
           +  + H H H  H+H S++      H+HGH+H
Sbjct: 55  HHGHSHAHGHG-HTHESIWHGHTHDHDHGHSH 85



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>ZIP1_ARATH (O81123) Zinc transporter 1 precursor (ZRT/IRT-like protein 1)|
          Length = 355

 Score = 29.3 bits (64), Expect = 2.9
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = +3

Query: 9   YXAYVHIHSHRQHSHTSMFSRAMLVHEHGHTHILRNK 119
           +  +VHIH+H  H HT           HG T ++R +
Sbjct: 173 HAGHVHIHTHASHGHT-----------HGSTELIRRR 198



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>SRCH_HUMAN (P23327) Sarcoplasmic reticulum histidine-rich calcium-binding|
           protein precursor
          Length = 699

 Score = 29.3 bits (64), Expect = 2.9
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = +3

Query: 24  HIHSHRQHSHTSMFSRAMLVHEHGHTHILRN 116
           H+ SHR HSH       ++  EH H HILR+
Sbjct: 151 HLPSHRSHSHQDEDEDEVVSSEH-HHHILRH 180



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>HNF1B_XENLA (Q91910) Hepatocyte nuclear factor 1-beta (HNF-1B) (LFB3) (XLFB3)|
          Length = 561

 Score = 29.3 bits (64), Expect = 2.9
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = +3

Query: 18  YVHIHSHRQHSHTSMFSRAMLVHEHGHTHILRN 116
           Y H H   Q+SHTS F  AM+V +      L N
Sbjct: 517 YAHKHEPPQYSHTSRFPSAMVVTDTSSISTLSN 549



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>KE4_MOUSE (Q31125) Zinc transporter SLC39A7 (Solute carrier family 39 member|
           7) (Histidine-rich membrane protein Ke4)
          Length = 476

 Score = 28.9 bits (63), Expect = 3.8
 Identities = 13/34 (38%), Positives = 16/34 (47%), Gaps = 2/34 (5%)
 Frame = +3

Query: 9   YXAYVHIHSHRQ--HSHTSMFSRAMLVHEHGHTH 104
           +  + H HSH    H H+   S     H HGHTH
Sbjct: 42  FHGHSHGHSHEDFHHGHSHGHSHEDFHHGHGHTH 75



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>ENGC_PROMA (Q7VEJ4) Probable GTPase engC (EC 3.6.1.-)|
          Length = 309

 Score = 28.9 bits (63), Expect = 3.8
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +2

Query: 95  TYTYS*EQIRKINGEGKPKAMSELTKLQWHFICGPSSV 208
           T+ Y    I  +NGEG  K  + L  ++   +CGPS V
Sbjct: 156 TWGYQPIPISIVNGEGIQKLSARLKSMKLGVLCGPSGV 193



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>KE4_CANFA (Q5TJF6) Zinc transporter SLC39A7 (Solute carrier family 39 member|
           7) (Histidine-rich membrane protein Ke4)
          Length = 469

 Score = 28.5 bits (62), Expect = 5.0
 Identities = 13/27 (48%), Positives = 14/27 (51%)
 Frame = +3

Query: 24  HIHSHRQHSHTSMFSRAMLVHEHGHTH 104
           H HSHR+ SH          H HGHTH
Sbjct: 43  HGHSHRR-SHEDFHHGHSYAHGHGHTH 68



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>BUD3_ASHGO (Q9HF61) Bud site selection protein BUD3|
          Length = 1478

 Score = 28.1 bits (61), Expect = 6.5
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = +3

Query: 24  HIHSHRQHSHTSMFSRAMLVHEHGHTHILRNK*ER*MEKENPKQ 155
           H    +++   S+ S     H++G  HILRN      E E+P+Q
Sbjct: 818 HKKDKKENKRNSVGSDTRNRHDNGSVHILRNSSSSFRELESPRQ 861


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,754,736
Number of Sequences: 219361
Number of extensions: 514756
Number of successful extensions: 1376
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1295
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1365
length of database: 80,573,946
effective HSP length: 46
effective length of database: 70,483,340
effective search space used: 1691600160
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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