ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags25f13
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|K02324.1|WHTRBCC Wheat (T. aestivum) chloroplast ribulosebisp... 327 8e-87
2emb|AJ131738.1|SCE131738 Secale cereale mRNA for hypothetical pr... 327 8e-87
3emb|X00235.1|TARUB2 Wheat mRNA fragment for small subunit precur... 319 2e-84
4emb|X83095.1|ASRBCSSS A.squarrosa mRNA for ribulose-1,5-bisphosp... 319 2e-84
5emb|X00234.1|TARUB1 Wheat mRNA fragment for small subunit precur... 285 3e-74
6gb|U43493.1|HVU43493 Hordeum vulgare ribulose-1,5-bisphosphate c... 170 1e-39
7gb|AC113171.3| Homo sapiens chromosome 3 clone RP11-696A14, comp... 52 7e-04
8ref|NM_144845.2| Mus musculus UDP glycosyltransferases 3 family,... 44 0.17
9gb|BC022134.1| Mus musculus UDP glycosyltransferases 3 family, p... 44 0.17
10gb|BC034837.1| Mus musculus UDP glycosyltransferases 3 family, p... 44 0.17
11dbj|AK143815.1| Mus musculus 6 days neonate spleen cDNA, RIKEN f... 44 0.17
12dbj|AK052644.1| Mus musculus 0 day neonate kidney cDNA, RIKEN fu... 44 0.17
13dbj|AK050128.1| Mus musculus adult male liver tumor cDNA, RIKEN ... 44 0.17
14dbj|AK041045.1| Mus musculus adult male aorta and vein cDNA, RIK... 44 0.17
15gb|AC108919.7| Mus musculus chromosome 6, clone RP23-52O21, comp... 42 0.69
16emb|AL022345.2|HSY738F9 Human DNA sequence from clone XX-Y738F9 ... 42 0.69
17gb|AC153916.2| Mus musculus 6 BAC RP23-93D20 (Roswell Park Cance... 42 0.69
18gb|L11243.1|RATRSKM2X Rat skeletal muscle voltage-sensitive sodi... 42 0.69
19gb|AE017349.1| Cryptococcus neoformans var. neoformans JEC21 chr... 40 2.7
20gb|AC113454.8| Mus musculus chromosome 3, clone RP24-176I19, com... 40 2.7
21ref|XM_572904.1| Cryptococcus neoformans var. neoformans JEC21 p... 40 2.7
22emb|AL513485.10| Human DNA sequence from clone RP11-48O20 on chr... 40 2.7
23emb|AL356534.12| Human DNA sequence from clone RP11-629P13 on ch... 40 2.7
24emb|AL354883.14| Human DNA sequence from clone RP1-67N4 on chrom... 40 2.7
25gb|AC073617.16| Homo sapiens Xp BAC RP11-413F15 (Roswell Park Ca... 40 2.7
26gb|AC112800.6| Rattus norvegicus X BAC CH230-275F1 (Children's H... 40 2.7
27gb|AC163014.5| Mus musculus chromosome 8, clone RP23-216D14, com... 40 2.7
28emb|BX572625.7| Zebrafish DNA sequence from clone CH211-192O15 i... 40 2.7
29gb|AC010377.7| Homo sapiens chromosome 5 clone CTD-2060J20, comp... 40 2.7
30dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 40 2.7
31dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 2.7
32emb|AL713953.3|CNS07YPY Oryza sativa chromosome 12, . BAC OJ1134... 40 2.7
33dbj|AP004886.3| Oryza sativa (japonica cultivar-group) genomic D... 40 2.7
34gb|AC108915.12| Mus musculus chromosome 8, clone RP23-444O13, co... 40 2.7
35gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 40 2.7
36emb|BX536967.2|CNS09SBH Oryza sativa chromosome 12, . BAC OSJNBa... 40 2.7
37emb|AL671901.14| Mouse DNA sequence from clone RP23-238B14 on ch... 40 2.7 
>gb|K02324.1|WHTRBCC Wheat (T. aestivum) chloroplast ribulosebisphosphate carboxylase
           small subunit mRNA, clone pTS406, 3' end
          Length = 317

 Score =  327 bits (165), Expect = 8e-87
 Identities = 201/214 (93%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttgtataatatcntgcgtacgtgcatatacatagccaccgacagcattcacatacaagca 60
           |||||||||||  ||||| |||||||||||||||||||||| ||||||||||||| ||||
Sbjct: 281 ttgtataatattatgcgtccgtgcatatacatagccaccgatagcattcacatacgagca 222

                                                                       
Query: 61  tgttttctcgagccatgttggtncatgaacatggacatacacatattcttaggaacaaat 120
           || |||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct: 221 tgctttctcgagccatgttcgtacatgaacatggacatacacatattcttaggaacaaat 162

                                                                       
Query: 121 aagaaagataaatggagaaggaaaacccaaagcaatgtcagagttgacaaaactgcaatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 161 aagaaagataaatggagaaggaaaacccaaagcaatgtcagagttgacaaaactgcaatg 102

                                             
Query: 181 gcactttatatgtggcccatcntcagtgagctgt 214
           ||||||||||| |||||  || | ||||||||||
Sbjct: 101 gcactttatatatggcctgtcgtgagtgagctgt 68
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>emb|AJ131738.1|SCE131738 Secale cereale mRNA for hypothetical protein, clone 9
          Length = 875

 Score =  327 bits (165), Expect = 8e-87
 Identities = 201/214 (93%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttgtataatatcntgcgtacgtgcatatacatagccaccgacagcattcacatacaagca 60
           |||||||||||  ||||| |||||||||||||||||||||| ||||||||||||| ||||
Sbjct: 828 ttgtataatattatgcgtccgtgcatatacatagccaccgatagcattcacatacgagca 769

                                                                       
Query: 61  tgttttctcgagccatgttggtncatgaacatggacatacacatattcttaggaacaaat 120
           || ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 768 tgctttctcgagccatgttggtacatgaacatggacatacacatattcttaggaacaaat 709

                                                                       
Query: 121 aagaaagataaatggagaaggaaaacccaaagcaatgtcagagttgacaaaactgcaatg 180
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 708 aagaaagataaatggacaaggaaaacccaaagcaatgtcagagttgacaaaactgcaatg 649

                                             
Query: 181 gcactttatatgtggcccatcntcagtgagctgt 214
           |||||||||||| ||||| |  | ||||||||||
Sbjct: 648 gcactttatatgcggcccgtggtgagtgagctgt 615
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>emb|X00235.1|TARUB2 Wheat mRNA fragment for small subunit precursor of RuBPCase (EC
           4.1.1.39 ribulosebisphosphate carboxylase) clones 234
           and 406
          Length = 743

 Score =  319 bits (161), Expect = 2e-84
 Identities = 200/214 (93%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttgtataatatcntgcgtacgtgcatatacatagccaccgacagcattcacatacaagca 60
           |||||||||||  ||||| ||| |||||||||||||||||| ||||||| ||||| ||||
Sbjct: 707 ttgtataatattatgcgtccgttcatatacatagccaccgatagcattctcatacgagca 648

                                                                       
Query: 61  tgttttctcgagccatgttggtncatgaacatggacatacacatattcttaggaacaaat 120
           || ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 647 tgctttctcgagccatgttggtacatgaacatggacatacacatattcttaggaacaaat 588

                                                                       
Query: 121 aagaaagataaatggagaaggaaaacccaaagcaatgtcagagttgacaaaactgcaatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 587 aagaaagataaatggagaaggaaaacccaaagcaatgtcagagttgacaaaactgcaatg 528

                                             
Query: 181 gcactttatatgtggcccatcntcagtgagctgt 214
           ||||||||||| |||||  || | ||||||||||
Sbjct: 527 gcactttatatatggcctgtcgtgagtgagctgt 494
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>emb|X83095.1|ASRBCSSS A.squarrosa mRNA for ribulose-1,5-bisphosphate
           carboxylase/oxygenase, small subunit
          Length = 837

 Score =  319 bits (161), Expect = 2e-84
 Identities = 180/187 (96%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttgtataatatcntgcgtacgtgcatatacatagccaccgacagcattcacatacaagca 60
           |||||||||||  ||||| |||||||||||||||||||||| ||||||||||||| ||||
Sbjct: 788 ttgtataatattatgcgtccgtgcatatacatagccaccgatagcattcacatacgagca 729

                                                                       
Query: 61  tgttttctcgagccatgttggtncatgaacatggacatacacatattcttaggaacaaat 120
           || ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 728 tgctttctcgagccatgttggtacatgaacatggacatacacatattcttaggaacaaat 669

                                                                       
Query: 121 aagaaagataaatggagaaggaaaacccaaagcaatgtcagagttgacaaaactgcaatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 aagaaagataaatggagaaggaaaacccaaagcaatgtcagagttgacaaaactgcaatg 609

                  
Query: 181 gcacttt 187
           |||||||
Sbjct: 608 gcacttt 602
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>emb|X00234.1|TARUB1 Wheat mRNA fragment for small subunit precursor of RuBPCase (EC
           4.1.1.39) (ribulosebisphosphate carboxylase, clone 512)
          Length = 611

 Score =  285 bits (144), Expect = 3e-74
 Identities = 181/194 (93%)
 Strand = Plus / Minus

                                                                       
Query: 21  gtgcatatacatagccaccgacagcattcacatacaagcatgttttctcgagccatgttg 80
           |||||||||||||||||||||  |||||||||||| |||| | |||||||||||||||||
Sbjct: 536 gtgcatatacatagccaccgattgcattcacatacgagcacgctttctcgagccatgttg 477

                                                                       
Query: 81  gtncatgaacatggacatacacatattcttaggaacaaataagaaagataaatggagaag 140
            | ||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||
Sbjct: 476 ttacatgaacatggacatacacatattcttaggaacaagtaagaaagacaaatggagaag 417

                                                                       
Query: 141 gaaaacccaaagcaatgtcagagttgacaaaactgcaatggcactttatatgtggcccat 200
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 416 gaaaacccaaagcaatgtcagagttgacaaaactgcaatggcactttatatgtggcccgt 357

                         
Query: 201 cntcagtgagctgt 214
             | ||||||||||
Sbjct: 356 ggtgagtgagctgt 343
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>gb|U43493.1|HVU43493 Hordeum vulgare ribulose-1,5-bisphosphate carboxylase small subunit
           mRNA, complete cds
          Length = 816

 Score =  170 bits (86), Expect = 1e-39
 Identities = 190/214 (88%), Gaps = 10/214 (4%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttgtataatatcntgcgtacgtgcatatacatagccaccgacagcattcacatacaagca 60
           |||||||||||  || | | ||||||||||||||||||||| ||||||||||||| ||||
Sbjct: 752 ttgtataatattatgtgcatgtgcatatacatagccaccgatagcattcacatacgagca 693

                                                                       
Query: 61  tgttttctcgagccatgttggtncatgaacatggacatacacatattcttaggaacaaat 120
           || ||||||||| ||||||||| |||||||||||   |||||| ||| |||||||| |||
Sbjct: 692 tgctttctcgag-catgttggtacatgaacatgggactacacacatt-ttaggaac-aat 636

                                                                       
Query: 121 aagaaagataaatggagaaggaaaacccaaagcaatgtcagagttgacaaaactgcaatg 180
           ||||||||| |||||||||||||||||  |||| |||||||||||||| |||||||||||
Sbjct: 635 aagaaagat-aatggagaaggaaaacc--aagc-atgtcagagttgac-aaactgcaatg 581

                                             
Query: 181 gcactttatatgtggcccatcntcagtgagctgt 214
           |||| |||||||| ||||||| ||||||||||||
Sbjct: 580 gcac-ttatatgt-gcccatcgtcagtgagctgt 549
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>gb|AC113171.3| Homo sapiens chromosome 3 clone RP11-696A14, complete sequence
          Length = 183599

 Score = 52.0 bits (26), Expect = 7e-04
 Identities = 29/30 (96%)
 Strand = Plus / Minus

                                           
Query: 116   caaataagaaagataaatggagaaggaaaa 145
             ||||||||||||| ||||||||||||||||
Sbjct: 97466 caaataagaaagaaaaatggagaaggaaaa 97437
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>ref|NM_144845.2| Mus musculus UDP glycosyltransferases 3 family, polypeptide A2
           (Ugt3a2), mRNA
          Length = 2197

 Score = 44.1 bits (22), Expect = 0.17
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                         
Query: 142 aaaacccaaagcaatgtcagagttgacaaa 171
           |||| ||||||||| |||||||||||||||
Sbjct: 869 aaaatccaaagcaaagtcagagttgacaaa 840
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>gb|BC022134.1| Mus musculus UDP glycosyltransferases 3 family, polypeptide A2,
           transcript variant 1, mRNA (cDNA clone MGC:37820
           IMAGE:5098754), complete cds
          Length = 2196

 Score = 44.1 bits (22), Expect = 0.17
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                         
Query: 142 aaaacccaaagcaatgtcagagttgacaaa 171
           |||| ||||||||| |||||||||||||||
Sbjct: 853 aaaatccaaagcaaagtcagagttgacaaa 824
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>gb|BC034837.1| Mus musculus UDP glycosyltransferases 3 family, polypeptide A2,
           transcript variant 1, mRNA (cDNA clone MGC:37957
           IMAGE:5134131), complete cds
          Length = 2192

 Score = 44.1 bits (22), Expect = 0.17
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                         
Query: 142 aaaacccaaagcaatgtcagagttgacaaa 171
           |||| ||||||||| |||||||||||||||
Sbjct: 849 aaaatccaaagcaaagtcagagttgacaaa 820
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>dbj|AK143815.1| Mus musculus 6 days neonate spleen cDNA, RIKEN full-length enriched
           library, clone:F430112M20 product:Hypothetical protein
           (Hypothetical UDP-glucoronosyl and UDP-glucosyl
           transferase containing protein), full insert sequence
          Length = 2284

 Score = 44.1 bits (22), Expect = 0.17
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                         
Query: 142 aaaacccaaagcaatgtcagagttgacaaa 171
           |||| ||||||||| |||||||||||||||
Sbjct: 883 aaaatccaaagcaaagtcagagttgacaaa 854
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>dbj|AK052644.1| Mus musculus 0 day neonate kidney cDNA, RIKEN full-length enriched
           library, clone:D630011D02 product:HYPOTHETICAL 59.7 KDA
           PROTEIN [Mus musculus]; weakly similar to
           UDP-Glycosyltransferase/glycogen phosphorylase, full
           insert sequence
          Length = 1723

 Score = 44.1 bits (22), Expect = 0.17
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                         
Query: 142 aaaacccaaagcaatgtcagagttgacaaa 171
           |||| ||||||||| |||||||||||||||
Sbjct: 878 aaaatccaaagcaaagtcagagttgacaaa 849
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>dbj|AK050128.1| Mus musculus adult male liver tumor cDNA, RIKEN full-length
           enriched library, clone:C730018P11 product:hypothetical
           UDP-glucoronosyl and UDP-glucosyl transferase containing
           protein, full insert sequence
          Length = 2197

 Score = 44.1 bits (22), Expect = 0.17
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                         
Query: 142 aaaacccaaagcaatgtcagagttgacaaa 171
           |||| ||||||||| |||||||||||||||
Sbjct: 869 aaaatccaaagcaaagtcagagttgacaaa 840
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>dbj|AK041045.1| Mus musculus adult male aorta and vein cDNA, RIKEN full-length
           enriched library, clone:A530069C13 product:hypothetical
           UDP-Glycosyltransferase/glycogen phosphorylase structure
           containing protein, full insert sequence
          Length = 1353

 Score = 44.1 bits (22), Expect = 0.17
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                         
Query: 142 aaaacccaaagcaatgtcagagttgacaaa 171
           |||| ||||||||| |||||||||||||||
Sbjct: 853 aaaatccaaagcaaagtcagagttgacaaa 824
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>gb|AC108919.7| Mus musculus chromosome 6, clone RP23-52O21, complete sequence
          Length = 141653

 Score = 42.1 bits (21), Expect = 0.69
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 105    attcttaggaacaaataagaaagat 129
              ||||||||||||||| |||||||||
Sbjct: 131901 attcttaggaacaaaaaagaaagat 131877
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>emb|AL022345.2|HSY738F9 Human DNA sequence from clone XX-Y738F9 on chromosome 10 Contains the
              ZNF37B pseudogene for zinc finger protein 37b (KOX 21), a
              eukaryotic translation initiation factor 3 subunit 6
              interacting protein (EIF3S6IP) pseudogene, the 3' end of
              the ZNF11B gene for zinc finger protein 11b (KOX 2), a
              novel gene (FLJ23327) and two CpG Islands, complete
              sequence
          Length = 146328

 Score = 42.1 bits (21), Expect = 0.69
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 151    agcaatgtcagagttgacaaa 171
              |||||||||||||||||||||
Sbjct: 137861 agcaatgtcagagttgacaaa 137841
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>gb|AC153916.2| Mus musculus 6 BAC RP23-93D20 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 221540

 Score = 42.1 bits (21), Expect = 0.69
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 105    attcttaggaacaaataagaaagat 129
              ||||||||||||||| |||||||||
Sbjct: 193767 attcttaggaacaaaaaagaaagat 193791
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>gb|L11243.1|RATRSKM2X Rat skeletal muscle voltage-sensitive sodium channel subtype 2
            (rSkM2) gene
          Length = 2825

 Score = 42.1 bits (21), Expect = 0.69
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 85   atgaacatggacatacacata 105
            |||||||||||||||||||||
Sbjct: 1420 atgaacatggacatacacata 1400
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>gb|AE017349.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 9, complete
               sequence
          Length = 1178688

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 143     aaacccaaagcaatgtcaga 162
               ||||||||||||||||||||
Sbjct: 1130897 aaacccaaagcaatgtcaga 1130916
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>gb|AC113454.8| Mus musculus chromosome 3, clone RP24-176I19, complete sequence
          Length = 171480

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 117   aaataagaaagataaatgga 136
             ||||||||||||||||||||
Sbjct: 75761 aaataagaaagataaatgga 75742
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>ref|XM_572904.1| Cryptococcus neoformans var. neoformans JEC21 protein phosphatase
           (CNI04270) partial mRNA
          Length = 3071

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 143 aaacccaaagcaatgtcaga 162
           ||||||||||||||||||||
Sbjct: 80  aaacccaaagcaatgtcaga 99
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>emb|AL513485.10| Human DNA sequence from clone RP11-48O20 on chromosome 1 Contains the
             TAGLN2 gene for transgelin 2, the IGSF9 gene for
             immunoglobulin superfamily member 9, the SLAMF9 gene for
             SLAM family member 9, a novel gene and three CpG islands,
             complete sequence
          Length = 80398

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 124   aaagataaatggagaaggaa 143
             ||||||||||||||||||||
Sbjct: 46055 aaagataaatggagaaggaa 46074
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>emb|AL356534.12| Human DNA sequence from clone RP11-629P13 on chromosome 6, complete
              sequence
          Length = 175757

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 169    aaaactgcaatggcacttta 188
              ||||||||||||||||||||
Sbjct: 166594 aaaactgcaatggcacttta 166575
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>emb|AL354883.14| Human DNA sequence from clone RP1-67N4 on chromosome 1 Contains part of
             the DAB1 gene for disabled homolog 1 (Drosophila),
             complete sequence
          Length = 134011

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 159   cagagttgacaaaactgcaatggc 182
             |||||||||||||||| |||||||
Sbjct: 88758 cagagttgacaaaactacaatggc 88735
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>gb|AC073617.16| Homo sapiens Xp BAC RP11-413F15 (Roswell Park Cancer Institute Human
            BAC Library) complete sequence
          Length = 151302

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 99   acacatattcttaggaacaaataagaaa 126
            |||||||||||||| |||||| ||||||
Sbjct: 9178 acacatattcttagtaacaaaaaagaaa 9151
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>gb|AC112800.6| Rattus norvegicus X BAC CH230-275F1 (Children's Hospital Oakland
             Research Institute) complete sequence
          Length = 147560

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 113   gaacaaataagaaagataaa 132
             ||||||||||||||||||||
Sbjct: 45388 gaacaaataagaaagataaa 45407
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>gb|AC163014.5| Mus musculus chromosome 8, clone RP23-216D14, complete sequence
          Length = 208407

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 125    aagataaatggagaaggaaa 144
              ||||||||||||||||||||
Sbjct: 190875 aagataaatggagaaggaaa 190894
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>emb|BX572625.7| Zebrafish DNA sequence from clone CH211-192O15 in linkage group 12,
              complete sequence
          Length = 155592

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 84     catgaacatggacatacaca 103
              ||||||||||||||||||||
Sbjct: 152155 catgaacatggacatacaca 152136
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>gb|AC010377.7| Homo sapiens chromosome 5 clone CTD-2060J20, complete sequence
          Length = 139476

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 85    atgaacatggacatacacatattc 108
             |||||||||| |||||||||||||
Sbjct: 31202 atgaacatgggcatacacatattc 31225
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 127     gataaatggagaaggaaaac 146
               ||||||||||||||||||||
Sbjct: 4847879 gataaatggagaaggaaaac 4847860
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 136     agaaggaaaacccaaagcaa 155
               ||||||||||||||||||||
Sbjct: 1491873 agaaggaaaacccaaagcaa 1491854
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>emb|AL713953.3|CNS07YPY Oryza sativa chromosome 12, . BAC OJ1134_A05 of library Monsanto from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 120825

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 127   gataaatggagaaggaaaac 146
             ||||||||||||||||||||
Sbjct: 90543 gataaatggagaaggaaaac 90562
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>dbj|AP004886.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0576F08
          Length = 135314

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 136   agaaggaaaacccaaagcaa 155
             ||||||||||||||||||||
Sbjct: 55294 agaaggaaaacccaaagcaa 55275
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>gb|AC108915.12| Mus musculus chromosome 8, clone RP23-444O13, complete sequence
          Length = 178228

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 125    aagataaatggagaaggaaa 144
              ||||||||||||||||||||
Sbjct: 104567 aagataaatggagaaggaaa 104586
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 127     gataaatggagaaggaaaac 146
               ||||||||||||||||||||
Sbjct: 4847860 gataaatggagaaggaaaac 4847841
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>emb|BX536967.2|CNS09SBH Oryza sativa chromosome 12, . BAC OSJNBa0029N15 of library OSJNBa from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 141053

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 127    gataaatggagaaggaaaac 146
              ||||||||||||||||||||
Sbjct: 112081 gataaatggagaaggaaaac 112100
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>emb|AL671901.14| Mouse DNA sequence from clone RP23-238B14 on chromosome X, complete
             sequence
          Length = 201821

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 85    atgaacatggacatacacat 104
             ||||||||||||||||||||
Sbjct: 17489 atgaacatggacatacacat 17470


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,366,077
Number of Sequences: 3902068
Number of extensions: 2366077
Number of successful extensions: 166750
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 166520
Number of HSP's gapped (non-prelim): 224
length of query: 214
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 192
effective length of database: 17,147,199,772
effective search space: 3292262356224
effective search space used: 3292262356224
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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