ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal1d24
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1NLTP3_HORVU (Q43766) Nonspecific lipid-transfer protein 3 precur... 39 0.015
2DXS_THEMA (Q9X291) 1-deoxy-D-xylulose-5-phosphate synthase (EC 2... 32 1.9
3WT1_PIG (O62651) Wilms' tumor protein homolog 30 4.2
4NLTP3_ARATH (Q9LLR7) Nonspecific lipid-transfer protein 3 precur... 30 7.2
5SCA_LILLO (Q9SW93) Stigma/stylar cysteine-rich adhesin precursor... 29 9.4

>NLTP3_HORVU (Q43766) Nonspecific lipid-transfer protein 3 precursor (LTP 3)|
           (CW20) (CW-20) (CW-19)
          Length = 118

 Score = 38.5 bits (88), Expect = 0.015
 Identities = 16/16 (100%), Positives = 16/16 (100%)
 Frame = -3

Query: 608 SVPFPISMSTDCNKVH 561
           SVPFPISMSTDCNKVH
Sbjct: 103 SVPFPISMSTDCNKVH 118



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>DXS_THEMA (Q9X291) 1-deoxy-D-xylulose-5-phosphate synthase (EC 2.2.1.7)|
           (1-deoxyxylulose-5-phosphate synthase) (DXP synthase)
           (DXPS)
          Length = 608

 Score = 31.6 bits (70), Expect = 1.9
 Identities = 11/17 (64%), Positives = 15/17 (88%)
 Frame = -1

Query: 172 ALYRCFEPQEDACVWDS 122
           ALYR F+P+EDA +WD+
Sbjct: 48  ALYRVFDPREDAIIWDT 64



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>WT1_PIG (O62651) Wilms' tumor protein homolog|
          Length = 449

 Score = 30.4 bits (67), Expect = 4.2
 Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
 Frame = +3

Query: 69  TSGDFVHLEHKSGHGALHESQTHASS--CGSKHRYSAH 176
           TS      E +S HGA +ES +HA+   CG+++R   H
Sbjct: 254 TSSSMKWTEGQSNHGAGYESDSHATPILCGAQYRIHTH 291



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>NLTP3_ARATH (Q9LLR7) Nonspecific lipid-transfer protein 3 precursor (LTP 3)|
          Length = 115

 Score = 29.6 bits (65), Expect = 7.2
 Identities = 10/15 (66%), Positives = 14/15 (93%)
 Frame = -3

Query: 608 SVPFPISMSTDCNKV 564
           S+P+PISMST+CN +
Sbjct: 100 SIPYPISMSTNCNNI 114



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>SCA_LILLO (Q9SW93) Stigma/stylar cysteine-rich adhesin precursor (Lipid|
           transfer protein)
          Length = 113

 Score = 29.3 bits (64), Expect = 9.4
 Identities = 10/15 (66%), Positives = 13/15 (86%)
 Frame = -3

Query: 608 SVPFPISMSTDCNKV 564
           ++P+PI M TDCNKV
Sbjct: 98  NIPYPIRMQTDCNKV 112


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 91,671,304
Number of Sequences: 219361
Number of extensions: 1947921
Number of successful extensions: 4023
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3860
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4020
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5424720305
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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