ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags24p18
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC146257.3| Pan troglodytes BAC clone CH251-113A6 from Y, com... 38 8.2
2dbj|BS000583.2| Pan troglodytes chromosome Y clone:PTB-614F22, c... 38 8.2
3dbj|BS000591.1| Pan troglodytes chromosome Y clone:PTB-113D22, c... 38 8.2
4gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence 38 8.2
5dbj|AK143984.1| Mus musculus adult male kidney cDNA, RIKEN full-... 38 8.2
6dbj|AK159109.1| Mus musculus osteoclast-like cell cDNA, RIKEN fu... 38 8.2
7dbj|AK159976.1| Mus musculus osteoclast-like cell cDNA, RIKEN fu... 38 8.2
8dbj|AK159954.1| Mus musculus osteoclast-like cell cDNA, RIKEN fu... 38 8.2
9dbj|AK159852.1| Mus musculus osteoclast-like cell cDNA, RIKEN fu... 38 8.2
10dbj|AK159481.1| Mus musculus osteoclast-like cell cDNA, RIKEN fu... 38 8.2
11gb|AC156631.2| Mus musculus BAC clone RP24-501O22 from chromosom... 38 8.2
12dbj|AK016668.1| Mus musculus adult male testis cDNA, RIKEN full-... 38 8.2
13gb|AC007043.3|AC007043 Homo sapiens BAC clone RP11-507E21 from Y... 38 8.2
14emb|BX248104.5| Zebrafish DNA sequence from clone DKEY-77P13 in ... 38 8.2
15emb|AL935134.10| Mouse DNA sequence from clone RP23-321D1 on chr... 38 8.2
16ref|NM_009996.2| Mus musculus cytochrome P450, family 24, subfam... 38 8.2
17dbj|D89669.1| Mus musculus mRNA for vitamin D-24-hydroxylase, co... 38 8.2 
>gb|AC146257.3| Pan troglodytes BAC clone CH251-113A6 from Y, complete sequence
          Length = 174522

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 63     tgggagatcaccatgttgg 81
              |||||||||||||||||||
Sbjct: 105202 tgggagatcaccatgttgg 105220
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>dbj|BS000583.2| Pan troglodytes chromosome Y clone:PTB-614F22, complete sequence
          Length = 158476

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 63    tgggagatcaccatgttgg 81
             |||||||||||||||||||
Sbjct: 40716 tgggagatcaccatgttgg 40698
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>dbj|BS000591.1| Pan troglodytes chromosome Y clone:PTB-113D22, complete sequence
          Length = 188847

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 63     tgggagatcaccatgttgg 81
              |||||||||||||||||||
Sbjct: 138740 tgggagatcaccatgttgg 138722
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>gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence
          Length = 23952694

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                   
Query: 63       tgggagatcaccatgttgg 81
                |||||||||||||||||||
Sbjct: 16931290 tgggagatcaccatgttgg 16931308
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>dbj|AK143984.1| Mus musculus adult male kidney cDNA, RIKEN full-length enriched
            library, clone:F530013B12 product:cytochrome P450, family
            24, subfamily a, polypeptide 1, full insert sequence
          Length = 3562

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 116  atattgaacaaaaccgagt 134
            |||||||||||||||||||
Sbjct: 2393 atattgaacaaaaccgagt 2375
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>dbj|AK159109.1| Mus musculus osteoclast-like cell cDNA, RIKEN full-length enriched
            library, clone:I420001O06 product:cytochrome P450, family
            24, subfamily a, polypeptide 1, full insert sequence
          Length = 3312

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 116  atattgaacaaaaccgagt 134
            |||||||||||||||||||
Sbjct: 2393 atattgaacaaaaccgagt 2375
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>dbj|AK159976.1| Mus musculus osteoclast-like cell cDNA, RIKEN full-length enriched
            library, clone:I420041M03 product:cytochrome P450, family
            24, subfamily a, polypeptide 1, full insert sequence
          Length = 3336

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 116  atattgaacaaaaccgagt 134
            |||||||||||||||||||
Sbjct: 2393 atattgaacaaaaccgagt 2375
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>dbj|AK159954.1| Mus musculus osteoclast-like cell cDNA, RIKEN full-length enriched
            library, clone:I420039M20 product:cytochrome P450, family
            24, subfamily a, polypeptide 1, full insert sequence
          Length = 3307

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 116  atattgaacaaaaccgagt 134
            |||||||||||||||||||
Sbjct: 2393 atattgaacaaaaccgagt 2375
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>dbj|AK159852.1| Mus musculus osteoclast-like cell cDNA, RIKEN full-length enriched
            library, clone:I420034F10 product:cytochrome P450, family
            24, subfamily a, polypeptide 1, full insert sequence
          Length = 3312

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 116  atattgaacaaaaccgagt 134
            |||||||||||||||||||
Sbjct: 2393 atattgaacaaaaccgagt 2375
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>dbj|AK159481.1| Mus musculus osteoclast-like cell cDNA, RIKEN full-length enriched
            library, clone:I420020N11 product:cytochrome P450, family
            24, subfamily a, polypeptide 1, full insert sequence
          Length = 3303

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 116  atattgaacaaaaccgagt 134
            |||||||||||||||||||
Sbjct: 2392 atattgaacaaaaccgagt 2374
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>gb|AC156631.2| Mus musculus BAC clone RP24-501O22 from chromosome 9, complete sequence
          Length = 165660

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 111   acggcatattgaacaaaac 129
             |||||||||||||||||||
Sbjct: 79715 acggcatattgaacaaaac 79697
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>dbj|AK016668.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched
           library, clone:4933405K06 product:cytochrome P450, 24,
           full insert sequence
          Length = 1048

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 116 atattgaacaaaaccgagt 134
           |||||||||||||||||||
Sbjct: 129 atattgaacaaaaccgagt 111
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>gb|AC007043.3|AC007043 Homo sapiens BAC clone RP11-507E21 from Y, complete sequence
          Length = 107402

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 63    tgggagatcaccatgttgg 81
             |||||||||||||||||||
Sbjct: 34405 tgggagatcaccatgttgg 34387
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>emb|BX248104.5| Zebrafish DNA sequence from clone DKEY-77P13 in linkage group 20,
             complete sequence
          Length = 139851

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 92    tgcttttgtgcccttgccc 110
             |||||||||||||||||||
Sbjct: 44887 tgcttttgtgcccttgccc 44869
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>emb|AL935134.10| Mouse DNA sequence from clone RP23-321D1 on chromosome 2, complete
             sequence
          Length = 105616

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 116   atattgaacaaaaccgagt 134
             |||||||||||||||||||
Sbjct: 86106 atattgaacaaaaccgagt 86124
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>ref|NM_009996.2| Mus musculus cytochrome P450, family 24, subfamily a, polypeptide 1
            (Cyp24a1), mRNA
          Length = 3295

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 116  atattgaacaaaaccgagt 134
            |||||||||||||||||||
Sbjct: 2385 atattgaacaaaaccgagt 2367
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>dbj|D89669.1| Mus musculus mRNA for vitamin D-24-hydroxylase, complete cds
          Length = 3295

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 116  atattgaacaaaaccgagt 134
            |||||||||||||||||||
Sbjct: 2385 atattgaacaaaaccgagt 2367


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,116,877
Number of Sequences: 3902068
Number of extensions: 1116877
Number of successful extensions: 53389
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 53354
Number of HSP's gapped (non-prelim): 35
length of query: 168
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 146
effective length of database: 17,147,199,772
effective search space: 2503491166712
effective search space used: 2503491166712
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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