ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags24p10
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK067236.1| Oryza sativa (japonica cultivar-group) cDNA clon... 149 1e-32
2dbj|AK062173.1| Oryza sativa (japonica cultivar-group) cDNA clon... 149 1e-32
3dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 117 4e-23
4dbj|AP003616.4| Oryza sativa (japonica cultivar-group) genomic D... 117 4e-23
5emb|BX465840.13| Zebrafish DNA sequence from clone DKEY-239J18 i... 48 0.031
6gb|AC153132.4| Mus musculus BAC clone RP24-362N19 from chromosom... 44 0.49
7emb|AJ289864.1|NTA289864 Nicotiana tabacum mRNA for microtubule-... 44 0.49
8gb|AC115691.8| Mus musculus chromosome 18, clone RP24-286B14, co... 42 1.9
9ref|NM_008738.1| Mus musculus neurturin (Nrtn), mRNA 42 1.9
10gb|AC158155.4| Mus musculus chromosome 3, clone RP23-167L9, comp... 42 1.9
11gb|AC099033.2| Drosophila melanogaster clone BACR14N05, complete... 42 1.9
12gb|AC125157.4| Mus musculus BAC clone RP24-390G17 from chromosom... 42 1.9
13gb|AC051638.24| Mus musculus chromosome 6, clone RP23-177J17, co... 42 1.9
14dbj|AK002508.1| Mus musculus adult male kidney cDNA, RIKEN full-... 42 1.9
15dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.9
16dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.9
17gb|AC101510.12| Mus musculus chromosome 3, clone RP23-190B7, com... 42 1.9
18dbj|AP004231.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.9
19dbj|AP004636.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.9
20dbj|AP003872.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.9
21gb|BC057993.1| Mus musculus neurturin, mRNA (cDNA clone MGC:6823... 42 1.9
22gb|AE003800.4| Drosophila melanogaster chromosome 2R, section 50... 42 1.9
23gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. ... 42 1.9
24gb|U78109.1|MMU78109 Mus musculus prepro-neurturin mRNA, complet... 42 1.9
25emb|CT010491.8| Mouse DNA sequence from clone RP23-308D12 on chr... 42 1.9
26gb|AC004309.1|AC004309 Drosophila melanogaster (P1 DS02561 (D201... 42 1.9
27gb|AC163032.5| Mus musculus BAC clone RP24-144G20 from chromosom... 40 7.6
28gb|AC117585.8| Mus musculus chromosome 5, clone RP23-155F13, com... 40 7.6
29ref|XM_367954.1| Magnaporthe grisea 70-15 chromosome III hypothe... 40 7.6
30gb|AE017180.1| Geobacter sulfurreducens PCA, complete genome 40 7.6
31gb|AC140269.3| Mus musculus BAC clone RP23-322I5 from chromosome... 40 7.6
32gb|AC091257.13| Mus musculus chromosome 6, clone RP23-154A4, com... 40 7.6
33ref|XM_652571.1| Aspergillus nidulans FGSC A4 hypothetical prote... 40 7.6
34gb|AC149058.7| Mus musculus BAC clone RP23-338G5 from chromosome... 40 7.6
35gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 7.6
36gb|AC163682.3| Mus musculus BAC clone RP24-124O15 from chromosom... 40 7.6
37gb|AC123866.4| Mus musculus BAC clone RP23-124I3 from chromosome... 40 7.6
38gb|AF040570.3| Amycolatopsis mediterranei rifamycin biosynthetic... 40 7.6
39gb|AC090683.7| Oryza sativa chromosome 3 BAC OSJNBa0035I24 genom... 40 7.6
40gb|AC130843.3| Mus musculus BAC clone RP24-501N9 from chromosome... 40 7.6
41gb|AC123951.3| Mus musculus BAC clone RP23-166M23 from 18, compl... 40 7.6
42gb|AC107661.10| Mus musculus chromosome 10, clone RP23-174M1, co... 40 7.6
43gb|AC152347.14| Medicago truncatula clone mth2-28c12, complete s... 40 7.6
44emb|AL590381.4| Human DNA sequence from clone RP11-373O10 on chr... 40 7.6
45emb|AL356492.10| Human DNA sequence from clone RP11-593I21 on ch... 40 7.6
46emb|AL356127.8| Human DNA sequence from clone RP11-368P1 on chro... 40 7.6
47emb|AL353133.7| Human DNA sequence from clone RP1-253B10 on chro... 40 7.6
48emb|AL138969.16| Human DNA sequence from clone RP1-110C15 on chr... 40 7.6
49emb|AL136107.12| Human DNA sequence from clone RP1-157N22 on chr... 40 7.6
50gb|AC087887.11| Homo sapiens 12 BAC RP11-27M21 (Roswell Park Can... 40 7.6
51emb|AL118523.18|HSJ1031J8 Human DNA sequence from clone RP5-1031... 40 7.6
52emb|CR388143.6| Zebrafish DNA sequence from clone DKEY-189O20 in... 40 7.6
53emb|BX571657.1| Wolinella succinogenes, complete genome; segment... 40 7.6
54emb|AJ842615.1| Vibrio gallicus partial rpoA gene for RNA polyme... 40 7.6
55emb|BX927212.11| Zebrafish DNA sequence from clone CH211-262A5 i... 40 7.6
56gb|AC150683.3| Mus musculus BAC clone RP23-435E16 from chromosom... 40 7.6
57gb|DQ090809.1| Palaeacarus sp. KD-2005 heat shock protein 82 (hs... 40 7.6
58gb|U35892.1|NHU35892 Nectria haematococca maackiain detoxificati... 40 7.6
59gb|AC012433.7| Homo sapiens, clone RP11-10I6, complete sequence 40 7.6
60gb|AC116369.5| Oryza sativa chromosome 3 BAC OSJNBb0113I20 genom... 40 7.6
61gb|AC008446.5| Homo sapiens chromosome 5 clone CTC-340A15, compl... 40 7.6
62dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.6
63gb|AC108479.5| Homo sapiens BAC clone RP11-1378G18 from 2, compl... 40 7.6
64gb|AC009426.8|AC009426 Homo sapiens, clone RP11-45H19, complete ... 40 7.6
65ref|XM_218795.3| PREDICTED: Rattus norvegicus similar to multipl... 40 7.6
66emb|AL833793.10| Mouse DNA sequence from clone RP23-366F22 on ch... 40 7.6
67emb|CR545466.9| Zebrafish DNA sequence from clone DKEYP-115A10 i... 40 7.6
68emb|BX537358.5| Zebrafish DNA sequence from clone DKEY-98L9 in l... 40 7.6
69emb|CT737308.2| Pan troglodytes chromosome X clone CH251-63C08 m... 40 7.6
70gb|AC100386.29| Mus musculus chromosome 10, clone RP23-132J19, c... 40 7.6
71emb|AL954867.12| Zebrafish DNA sequence from clone DKEY-1G17 in ... 40 7.6
72gb|AC150659.3| Mus musculus BAC clone RP24-147D24 from Y, comple... 40 7.6
73gb|AC132328.3| Mus musculus BAC clone RP24-195C6 from 10, comple... 40 7.6
74emb|AL845366.6| Zebrafish DNA sequence from clone CH211-167C22 i... 40 7.6
75gb|AC167979.3| Mus musculus BAC clone CH36-45M24 from chromosome... 40 7.6 
>dbj|AK067236.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013095H11, full
            insert sequence
          Length = 2168

 Score =  149 bits (75), Expect = 1e-32
 Identities = 150/175 (85%)
 Strand = Plus / Minus

                                                                        
Query: 295  ccgacagcctccggtttggcgtgccgttcaccgcgccgccattgacccgagggccaggca 354
            |||| ||||||||||| || ||||| || || ||||| || ||| |||| ||||||||| 
Sbjct: 1763 ccgagagcctccggttcggtgtgccattgactgcgccaccgttggcccgcgggccaggcg 1704

                                                                        
Query: 355  acttctttgcagactggggccgggccgggctcggctttgacccaaacagcttctcctgct 414
             |||| |||  || ||||||||||| |||||||| || || || || |||||||||||||
Sbjct: 1703 ccttccttgaggattggggccgggctgggctcggtttcgagccgaagagcttctcctgct 1644

                                                                   
Query: 415  cggcggctagctggtcgtttatcttcttctggtccctcattcttcgcttctcttc 469
            | || ||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 1643 ctgcagctagctggtcgtttatcttcttctggtccctcattcgtcgcttctcttc 1589
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>dbj|AK062173.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-046-C10, full
            insert sequence
          Length = 1508

 Score =  149 bits (75), Expect = 1e-32
 Identities = 150/175 (85%)
 Strand = Plus / Minus

                                                                        
Query: 295  ccgacagcctccggtttggcgtgccgttcaccgcgccgccattgacccgagggccaggca 354
            |||| ||||||||||| || ||||| || || ||||| || ||| |||| ||||||||| 
Sbjct: 1196 ccgagagcctccggttcggtgtgccattgactgcgccaccgttggcccgcgggccaggcg 1137

                                                                        
Query: 355  acttctttgcagactggggccgggccgggctcggctttgacccaaacagcttctcctgct 414
             |||| |||  || ||||||||||| |||||||| || || || || |||||||||||||
Sbjct: 1136 ccttccttgaggattggggccgggctgggctcggtttcgagccgaagagcttctcctgct 1077

                                                                   
Query: 415  cggcggctagctggtcgtttatcttcttctggtccctcattcttcgcttctcttc 469
            | || ||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 1076 ctgcagctagctggtcgtttatcttcttctggtccctcattcgtcgcttctcttc 1022
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score =  117 bits (59), Expect = 4e-23
 Identities = 131/155 (84%)
 Strand = Plus / Minus

                                                                            
Query: 295      ccgacagcctccggtttggcgtgccgttcaccgcgccgccattgacccgagggccaggca 354
                |||| ||||||||||| || ||||| || || ||||| || ||| |||| ||||||||| 
Sbjct: 23979618 ccgagagcctccggttcggtgtgccattgactgcgccaccgttggcccgcgggccaggcg 23979559

                                                                            
Query: 355      acttctttgcagactggggccgggccgggctcggctttgacccaaacagcttctcctgct 414
                 |||| |||  || ||||||||||| |||||||| || || || || |||||||||||||
Sbjct: 23979558 ccttccttgaggattggggccgggctgggctcggtttcgagccgaagagcttctcctgct 23979499

                                                   
Query: 415      cggcggctagctggtcgtttatcttcttctggtcc 449
                | || ||||||||||||||||||||||||||||||
Sbjct: 23979498 ctgcagctagctggtcgtttatcttcttctggtcc 23979464
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>dbj|AP003616.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0490F09
          Length = 149542

 Score =  117 bits (59), Expect = 4e-23
 Identities = 131/155 (84%)
 Strand = Plus / Minus

                                                                          
Query: 295    ccgacagcctccggtttggcgtgccgttcaccgcgccgccattgacccgagggccaggca 354
              |||| ||||||||||| || ||||| || || ||||| || ||| |||| ||||||||| 
Sbjct: 109229 ccgagagcctccggttcggtgtgccattgactgcgccaccgttggcccgcgggccaggcg 109170

                                                                          
Query: 355    acttctttgcagactggggccgggccgggctcggctttgacccaaacagcttctcctgct 414
               |||| |||  || ||||||||||| |||||||| || || || || |||||||||||||
Sbjct: 109169 ccttccttgaggattggggccgggctgggctcggtttcgagccgaagagcttctcctgct 109110

                                                 
Query: 415    cggcggctagctggtcgtttatcttcttctggtcc 449
              | || ||||||||||||||||||||||||||||||
Sbjct: 109109 ctgcagctagctggtcgtttatcttcttctggtcc 109075
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>emb|BX465840.13| Zebrafish DNA sequence from clone DKEY-239J18 in linkage group 12,
             complete sequence
          Length = 108855

 Score = 48.1 bits (24), Expect = 0.031
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                     
Query: 461   cttctcttcctctttctcttgtct 484
             ||||||||||||||||||||||||
Sbjct: 75835 cttctcttcctctttctcttgtct 75812
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>gb|AC153132.4| Mus musculus BAC clone RP24-362N19 from chromosome 13, complete sequence
          Length = 178970

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                            
Query: 451    tcattcttcgcttctcttcctctttctctt 480
              ||||||||| |||||||||||||| |||||
Sbjct: 142265 tcattcttctcttctcttcctcttcctctt 142294
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>emb|AJ289864.1|NTA289864 Nicotiana tabacum mRNA for microtubule-associated protein MAP65-1c
            (map65-1c gene)
          Length = 2040

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 82/102 (80%)
 Strand = Plus / Minus

                                                                        
Query: 437  cttcttctggtccctcattcttcgcttctcttcctctttctcttgtctcaggattctgta 496
            |||||||||||||| ||  ||||| |||||||| ||| | || || || || ||  | ||
Sbjct: 1597 cttcttctggtcccgcaaccttcgtttctcttcttctctatcgtgcctgagcatcatata 1538

                                                      
Query: 497  ttcgtccagcatcgcaagaagtgcgacaccgtcataggtgaa 538
            |||||| ||||| ||||| ||||  ||||||||||| |||||
Sbjct: 1537 ttcgtctagcatggcaagcagtggaacaccgtcatatgtgaa 1496
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>gb|AC115691.8| Mus musculus chromosome 18, clone RP24-286B14, complete sequence
          Length = 175016

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 436   tcttcttctggtccctcattc 456
             |||||||||||||||||||||
Sbjct: 63789 tcttcttctggtccctcattc 63809
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>ref|NM_008738.1| Mus musculus neurturin (Nrtn), mRNA
          Length = 1023

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 368 ctggggccgggccgggctcgg 388
           |||||||||||||||||||||
Sbjct: 267 ctggggccgggccgggctcgg 287
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>gb|AC158155.4| Mus musculus chromosome 3, clone RP23-167L9, complete sequence
          Length = 205345

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 460   gcttctcttcctctttctctt 480
             |||||||||||||||||||||
Sbjct: 56505 gcttctcttcctctttctctt 56525
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>gb|AC099033.2| Drosophila melanogaster clone BACR14N05, complete sequence
          Length = 170313

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 456   cttcgcttctcttcctctttc 476
             |||||||||||||||||||||
Sbjct: 89904 cttcgcttctcttcctctttc 89884
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>gb|AC125157.4| Mus musculus BAC clone RP24-390G17 from chromosome 18, complete sequence
          Length = 207265

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 436    tcttcttctggtccctcattc 456
              |||||||||||||||||||||
Sbjct: 116657 tcttcttctggtccctcattc 116677
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>gb|AC051638.24| Mus musculus chromosome 6, clone RP23-177J17, complete sequence
          Length = 231841

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 455    tcttcgcttctcttcctctttctct 479
              ||||| |||||||||||||||||||
Sbjct: 184211 tcttctcttctcttcctctttctct 184235
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>dbj|AK002508.1| Mus musculus adult male kidney cDNA, RIKEN full-length enriched
           library, clone:0610010N14 product:NEURTURIN PRECURSOR,
           full insert sequence
          Length = 1160

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 368 ctggggccgggccgggctcgg 388
           |||||||||||||||||||||
Sbjct: 407 ctggggccgggccgggctcgg 427
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 84       aagctaagctaagcttaagct 104
                |||||||||||||||||||||
Sbjct: 19336821 aagctaagctaagcttaagct 19336801
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 84       aagctaagctaagcttaagct 104
                |||||||||||||||||||||
Sbjct: 20338269 aagctaagctaagcttaagct 20338289
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>gb|AC101510.12| Mus musculus chromosome 3, clone RP23-190B7, complete sequence
          Length = 235744

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 460   gcttctcttcctctttctctt 480
             |||||||||||||||||||||
Sbjct: 80132 gcttctcttcctctttctctt 80112
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>dbj|AP004231.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:OSJNBa0026J14
          Length = 163496

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 84     aagctaagctaagcttaagct 104
              |||||||||||||||||||||
Sbjct: 104302 aagctaagctaagcttaagct 104322
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>dbj|AP004636.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0685B10
          Length = 148544

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 84    aagctaagctaagcttaagct 104
             |||||||||||||||||||||
Sbjct: 66264 aagctaagctaagcttaagct 66244
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>dbj|AP003872.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
              clone:OJ1118_A03
          Length = 109873

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 84     aagctaagctaagcttaagct 104
              |||||||||||||||||||||
Sbjct: 109834 aagctaagctaagcttaagct 109814
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>gb|BC057993.1| Mus musculus neurturin, mRNA (cDNA clone MGC:68236 IMAGE:5345262),
           complete cds
          Length = 1064

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 368 ctggggccgggccgggctcgg 388
           |||||||||||||||||||||
Sbjct: 248 ctggggccgggccgggctcgg 268
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>gb|AE003800.4| Drosophila melanogaster chromosome 2R, section 50 of 73 of the complete
              sequence
          Length = 255380

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 456    cttcgcttctcttcctctttc 476
              |||||||||||||||||||||
Sbjct: 250386 cttcgcttctcttcctctttc 250406
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>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome
          Length = 4829781

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                            
Query: 404     cttctcctgctcggcggctagctggtcgt 432
               |||||| ||||||||||| ||||||||||
Sbjct: 2207888 cttctcgtgctcggcggccagctggtcgt 2207860
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>gb|U78109.1|MMU78109 Mus musculus prepro-neurturin mRNA, complete cds
          Length = 1023

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 368 ctggggccgggccgggctcgg 388
           |||||||||||||||||||||
Sbjct: 267 ctggggccgggccgggctcgg 287
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>emb|CT010491.8| Mouse DNA sequence from clone RP23-308D12 on chromosome 17, complete
              sequence
          Length = 208070

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 368    ctggggccgggccgggctcgg 388
              |||||||||||||||||||||
Sbjct: 112018 ctggggccgggccgggctcgg 111998
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>gb|AC004309.1|AC004309 Drosophila melanogaster (P1 DS02561 (D201)) DNA sequence, complete
             sequence
          Length = 34721

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 456   cttcgcttctcttcctctttc 476
             |||||||||||||||||||||
Sbjct: 14760 cttcgcttctcttcctctttc 14780
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>gb|AC163032.5| Mus musculus BAC clone RP24-144G20 from chromosome 12, complete sequence
          Length = 186416

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 461    cttctcttcctctttctctt 480
              ||||||||||||||||||||
Sbjct: 183412 cttctcttcctctttctctt 183393
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>gb|AC117585.8| Mus musculus chromosome 5, clone RP23-155F13, complete sequence
          Length = 215745

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 465   tcttcctctttctcttgtct 484
             ||||||||||||||||||||
Sbjct: 68233 tcttcctctttctcttgtct 68252
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>ref|XM_367954.1| Magnaporthe grisea 70-15 chromosome III hypothetical protein
             (MG07858.4) partial mRNA
          Length = 13932

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 245   ctccctgcgcccatccctgc 264
             ||||||||||||||||||||
Sbjct: 13033 ctccctgcgcccatccctgc 13052
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>gb|AE017180.1| Geobacter sulfurreducens PCA, complete genome
          Length = 3814139

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 367     actggggccgggccgggctc 386
               ||||||||||||||||||||
Sbjct: 3230274 actggggccgggccgggctc 3230293
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>gb|AC140269.3| Mus musculus BAC clone RP23-322I5 from chromosome 3, complete sequence
          Length = 205887

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 461    cttctcttcctctttctctt 480
              ||||||||||||||||||||
Sbjct: 123337 cttctcttcctctttctctt 123356
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>gb|AC091257.13| Mus musculus chromosome 6, clone RP23-154A4, complete sequence
          Length = 193889

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 461   cttctcttcctctttctctt 480
             ||||||||||||||||||||
Sbjct: 34618 cttctcttcctctttctctt 34637
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>ref|XM_652571.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN0059.2), mRNA
          Length = 1308

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 459 cgcttctcttcctctttctcttgt 482
           |||||||||||||||| |||||||
Sbjct: 548 cgcttctcttcctcttcctcttgt 525
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>gb|AC149058.7| Mus musculus BAC clone RP23-338G5 from chromosome 7, complete
            sequence
          Length = 219369

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 461  cttctcttcctctttctctt 480
            ||||||||||||||||||||
Sbjct: 1566 cttctcttcctctttctctt 1547
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 461      cttctcttcctctttctctt 480
                ||||||||||||||||||||
Sbjct: 26266177 cttctcttcctctttctctt 26266158
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>gb|AC163682.3| Mus musculus BAC clone RP24-124O15 from chromosome 6, complete sequence
          Length = 178990

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 461    cttctcttcctctttctctt 480
              ||||||||||||||||||||
Sbjct: 119204 cttctcttcctctttctctt 119223
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>gb|AC123866.4| Mus musculus BAC clone RP23-124I3 from chromosome 8, complete sequence
          Length = 217446

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 461    cttctcttcctctttctctt 480
              ||||||||||||||||||||
Sbjct: 172010 cttctcttcctctttctctt 171991
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>gb|AF040570.3| Amycolatopsis mediterranei rifamycin biosynthetic gene cluster
          Length = 109528

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 134    acttctccgacaccggcacc 153
              ||||||||||||||||||||
Sbjct: 100427 acttctccgacaccggcacc 100408
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>gb|AC090683.7| Oryza sativa chromosome 3 BAC OSJNBa0035I24 genomic sequence, complete
              sequence
          Length = 134728

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 461    cttctcttcctctttctctt 480
              ||||||||||||||||||||
Sbjct: 124503 cttctcttcctctttctctt 124522
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>gb|AC130843.3| Mus musculus BAC clone RP24-501N9 from chromosome 1, complete sequence
          Length = 141921

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 454   ttcttcgcttctcttcctctttctcttg 481
             ||||| ||||||||||||||| ||||||
Sbjct: 81388 ttcttagcttctcttcctcttgctcttg 81415
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>gb|AC123951.3| Mus musculus BAC clone RP23-166M23 from 18, complete sequence
          Length = 220088

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 461    cttctcttcctctttctctt 480
              ||||||||||||||||||||
Sbjct: 136529 cttctcttcctctttctctt 136510
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>gb|AC107661.10| Mus musculus chromosome 10, clone RP23-174M1, complete sequence
          Length = 187233

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 461   cttctcttcctctttctctt 480
             ||||||||||||||||||||
Sbjct: 30417 cttctcttcctctttctctt 30398
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>gb|AC152347.14| Medicago truncatula clone mth2-28c12, complete sequence
          Length = 112461

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 461   cttctcttcctctttctctt 480
             ||||||||||||||||||||
Sbjct: 85128 cttctcttcctctttctctt 85147
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>emb|AL590381.4| Human DNA sequence from clone RP11-373O10 on chromosome 9, complete
             sequence
          Length = 182430

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 461   cttctcttcctctttctctt 480
             ||||||||||||||||||||
Sbjct: 80777 cttctcttcctctttctctt 80758
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>emb|AL356492.10| Human DNA sequence from clone RP11-593I21 on chromosome 6, complete
             sequence
          Length = 40479

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 460   gcttctcttcctctttctct 479
             ||||||||||||||||||||
Sbjct: 20298 gcttctcttcctctttctct 20279
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>emb|AL356127.8| Human DNA sequence from clone RP11-368P1 on chromosome 6, complete
              sequence
          Length = 139086

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 461    cttctcttcctctttctctt 480
              ||||||||||||||||||||
Sbjct: 109558 cttctcttcctctttctctt 109539
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>emb|AL353133.7| Human DNA sequence from clone RP1-253B10 on chromosome 6q14.3-16.1
             Contains a ribosomal protein L29 (RPL29) pseudogene and a
             novel pseudogene, complete sequence
          Length = 125527

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 461   cttctcttcctctttctctt 480
             ||||||||||||||||||||
Sbjct: 72816 cttctcttcctctttctctt 72835
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>emb|AL138969.16| Human DNA sequence from clone RP1-110C15 on chromosome X, complete
             sequence
          Length = 144658

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 461   cttctcttcctctttctctt 480
             ||||||||||||||||||||
Sbjct: 30196 cttctcttcctctttctctt 30177
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>emb|AL136107.12| Human DNA sequence from clone RP1-157N22 on chromosome 6q22.32-23.2
             Contains the 3' end of a variant of the TCBA1 gene for
             T-cell lymphoma breakpoint associated target 1, complete
             sequence
          Length = 73886

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 462   ttctcttcctctttctcttg 481
             ||||||||||||||||||||
Sbjct: 11019 ttctcttcctctttctcttg 11000
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>gb|AC087887.11| Homo sapiens 12 BAC RP11-27M21 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 104526

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 461   cttctcttcctctttctctt 480
             ||||||||||||||||||||
Sbjct: 38832 cttctcttcctctttctctt 38813
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>emb|AL118523.18|HSJ1031J8 Human DNA sequence from clone RP5-1031J8 on chromosome 20 Contains a
              putative novel gene, STSs and GSSs, complete sequence
          Length = 155213

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 461    cttctcttcctctttctctt 480
              ||||||||||||||||||||
Sbjct: 101088 cttctcttcctctttctctt 101069
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>emb|CR388143.6| Zebrafish DNA sequence from clone DKEY-189O20 in linkage group 21,
              complete sequence
          Length = 243457

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 461    cttctcttcctctttctcttgtct 484
              |||||||||||||| |||||||||
Sbjct: 230814 cttctcttcctcttcctcttgtct 230837
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>emb|BX571657.1| Wolinella succinogenes, complete genome; segment 1/7
          Length = 347961

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 238    tgacgctctccctgcgcccatccctgct 265
              |||| ||| |||||||||||||||||||
Sbjct: 191510 tgacactccccctgcgcccatccctgct 191483
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>emb|AJ842615.1| Vibrio gallicus partial rpoA gene for RNA polymerase alpha-subunit,
           strain LMG 21330T
          Length = 931

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 460 gcttctcttcctctttctct 479
           ||||||||||||||||||||
Sbjct: 723 gcttctcttcctctttctct 704
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>emb|BX927212.11| Zebrafish DNA sequence from clone CH211-262A5 in linkage group 5,
             complete sequence
          Length = 157791

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 82    ctaagctaagctaagcttaa 101
             ||||||||||||||||||||
Sbjct: 61828 ctaagctaagctaagcttaa 61847
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>gb|AC150683.3| Mus musculus BAC clone RP23-435E16 from chromosome 7, complete sequence
          Length = 198646

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 461   cttctcttcctctttctctt 480
             ||||||||||||||||||||
Sbjct: 13501 cttctcttcctctttctctt 13520
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>gb|DQ090809.1| Palaeacarus sp. KD-2005 heat shock protein 82 (hsp82) gene, partial
           cds
          Length = 513

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 461 cttctcttcctctttctctt 480
           ||||||||||||||||||||
Sbjct: 306 cttctcttcctctttctctt 287
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>gb|U35892.1|NHU35892 Nectria haematococca maackiain detoxification (MAK1) gene, complete
           cds
          Length = 2730

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 192 gcgtcgtccttggcgatggc 211
           ||||||||||||||||||||
Sbjct: 910 gcgtcgtccttggcgatggc 929
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>gb|AC012433.7| Homo sapiens, clone RP11-10I6, complete sequence
          Length = 144804

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 461   cttctcttcctctttctctt 480
             ||||||||||||||||||||
Sbjct: 33302 cttctcttcctctttctctt 33321
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>gb|AC116369.5| Oryza sativa chromosome 3 BAC OSJNBb0113I20 genomic sequence, complete
             sequence
          Length = 122939

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 461   cttctcttcctctttctctt 480
             ||||||||||||||||||||
Sbjct: 95636 cttctcttcctctttctctt 95617
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>gb|AC008446.5| Homo sapiens chromosome 5 clone CTC-340A15, complete sequence
          Length = 152232

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 461   cttctcttcctctttctctt 480
             ||||||||||||||||||||
Sbjct: 20896 cttctcttcctctttctctt 20877
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 461      cttctcttcctctttctctt 480
                ||||||||||||||||||||
Sbjct: 26357486 cttctcttcctctttctctt 26357467
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>gb|AC108479.5| Homo sapiens BAC clone RP11-1378G18 from 2, complete sequence
          Length = 184433

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 461   cttctcttcctctttctctt 480
             ||||||||||||||||||||
Sbjct: 22749 cttctcttcctctttctctt 22768
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>gb|AC009426.8|AC009426 Homo sapiens, clone RP11-45H19, complete sequence
          Length = 154313

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 462    ttctcttcctctttctcttg 481
              ||||||||||||||||||||
Sbjct: 133767 ttctcttcctctttctcttg 133786
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>ref|XM_218795.3| PREDICTED: Rattus norvegicus similar to multiple C2-domains with two
            transmembrane regions 2 (LOC308742), mRNA
          Length = 3666

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 461  cttctcttcctctttctctt 480
            ||||||||||||||||||||
Sbjct: 2952 cttctcttcctctttctctt 2933
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>emb|AL833793.10| Mouse DNA sequence from clone RP23-366F22 on chromosome 2, complete
             sequence
          Length = 124256

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 467   ttcctctttctcttgtctca 486
             ||||||||||||||||||||
Sbjct: 47538 ttcctctttctcttgtctca 47519
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>emb|CR545466.9| Zebrafish DNA sequence from clone DKEYP-115A10 in linkage group 20,
             complete sequence
          Length = 84525

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 82    ctaagctaagctaagcttaa 101
             ||||||||||||||||||||
Sbjct: 83484 ctaagctaagctaagcttaa 83503
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>emb|BX537358.5| Zebrafish DNA sequence from clone DKEY-98L9 in linkage group 4, complete
              sequence
          Length = 230105

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 463    tctcttcctctttctcttgt 482
              ||||||||||||||||||||
Sbjct: 166419 tctcttcctctttctcttgt 166438
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>emb|CT737308.2| Pan troglodytes chromosome X clone CH251-63C08 map Xq28, complete
             sequence
          Length = 166183

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 461   cttctcttcctctttctctt 480
             ||||||||||||||||||||
Sbjct: 92907 cttctcttcctctttctctt 92888
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>gb|AC100386.29| Mus musculus chromosome 10, clone RP23-132J19, complete sequence
          Length = 216928

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 463   tctcttcctctttctcttgt 482
             ||||||||||||||||||||
Sbjct: 42740 tctcttcctctttctcttgt 42721
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>emb|AL954867.12| Zebrafish DNA sequence from clone DKEY-1G17 in linkage group 6,
             complete sequence
          Length = 222787

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 457   ttcgcttctcttcctctttctctt 480
             ||||||||||||| ||||||||||
Sbjct: 67734 ttcgcttctcttcatctttctctt 67757
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>gb|AC150659.3| Mus musculus BAC clone RP24-147D24 from Y, complete sequence
          Length = 145892

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 461    cttctcttcctctttctctt 480
              ||||||||||||||||||||
Sbjct: 141817 cttctcttcctctttctctt 141798
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>gb|AC132328.3| Mus musculus BAC clone RP24-195C6 from 10, complete sequence
          Length = 146064

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 461   cttctcttcctctttctctt 480
             ||||||||||||||||||||
Sbjct: 21824 cttctcttcctctttctctt 21843
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>emb|AL845366.6| Zebrafish DNA sequence from clone CH211-167C22 in linkage group 20,
              complete sequence
          Length = 149189

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 82     ctaagctaagctaagcttaa 101
              ||||||||||||||||||||
Sbjct: 129713 ctaagctaagctaagcttaa 129694
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>gb|AC167979.3| Mus musculus BAC clone CH36-45M24 from chromosome 12, complete sequence
          Length = 173138

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 461    cttctcttcctctttctctt 480
              ||||||||||||||||||||
Sbjct: 110396 cttctcttcctctttctctt 110415


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,091,842
Number of Sequences: 3902068
Number of extensions: 4091842
Number of successful extensions: 111511
Number of sequences better than 10.0: 75
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 111044
Number of HSP's gapped (non-prelim): 466
length of query: 561
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 538
effective length of database: 17,143,297,704
effective search space: 9223094164752
effective search space used: 9223094164752
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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