| Clone Name | rbags25e14 |
|---|---|
| Clone Library Name | barley_pub |
| No. | Definition | Score (bits) |
E Value |
1 | PF21B_HUMAN (Q96EK2) PHD finger protein 21B | 29 | 2.8 | 2 | RPGF6_HUMAN (Q8TEU7) Rap guanine nucleotide exchange factor 6 (P... | 28 | 8.3 | 3 | PF21B_MOUSE (Q8C966) PHD finger protein 21B | 28 | 8.3 |
|---|
>PF21B_HUMAN (Q96EK2) PHD finger protein 21B| Length = 531 Score = 29.3 bits (64), Expect = 2.8 Identities = 14/33 (42%), Positives = 19/33 (57%) Frame = -1 Query: 139 CRQ*LLKXGDDGVNWKALLVVIQSYCN*KAVSE 41 C+Q LK D+GV W +L ++ SY K V E Sbjct: 396 CQQKALKK-DEGVPWTGMLAIVHSYVTHKTVKE 427
>RPGF6_HUMAN (Q8TEU7) Rap guanine nucleotide exchange factor 6 (PDZ| domain-containing guanine nucleotide exchange factor 2) (PDZ-GEF2) (RA-GEF-2) Length = 1601 Score = 27.7 bits (60), Expect = 8.3 Identities = 13/30 (43%), Positives = 18/30 (60%) Frame = +1 Query: 64 SMIVSPPTKPSNSLHRLLTLVATACKDHLS 153 S+ SPP P S H+ TL+ +A D+LS Sbjct: 1233 SLHSSPPASPQGSPHKGYTLIPSAKSDNLS 1262
>PF21B_MOUSE (Q8C966) PHD finger protein 21B| Length = 487 Score = 27.7 bits (60), Expect = 8.3 Identities = 13/33 (39%), Positives = 19/33 (57%) Frame = -1 Query: 139 CRQ*LLKXGDDGVNWKALLVVIQSYCN*KAVSE 41 C++ LK D+GV W +L ++ SY K V E Sbjct: 351 CQRKALKK-DEGVPWTGMLAIVHSYVTHKTVKE 382 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 21,620,944 Number of Sequences: 219361 Number of extensions: 268648 Number of successful extensions: 734 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 728 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 734 length of database: 80,573,946 effective HSP length: 55 effective length of database: 68,509,091 effective search space used: 1644218184 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)