ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags25e14
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PF21B_HUMAN (Q96EK2) PHD finger protein 21B 29 2.8
2RPGF6_HUMAN (Q8TEU7) Rap guanine nucleotide exchange factor 6 (P... 28 8.3
3PF21B_MOUSE (Q8C966) PHD finger protein 21B 28 8.3

>PF21B_HUMAN (Q96EK2) PHD finger protein 21B|
          Length = 531

 Score = 29.3 bits (64), Expect = 2.8
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = -1

Query: 139 CRQ*LLKXGDDGVNWKALLVVIQSYCN*KAVSE 41
           C+Q  LK  D+GV W  +L ++ SY   K V E
Sbjct: 396 CQQKALKK-DEGVPWTGMLAIVHSYVTHKTVKE 427



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>RPGF6_HUMAN (Q8TEU7) Rap guanine nucleotide exchange factor 6 (PDZ|
            domain-containing guanine nucleotide exchange factor 2)
            (PDZ-GEF2) (RA-GEF-2)
          Length = 1601

 Score = 27.7 bits (60), Expect = 8.3
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +1

Query: 64   SMIVSPPTKPSNSLHRLLTLVATACKDHLS 153
            S+  SPP  P  S H+  TL+ +A  D+LS
Sbjct: 1233 SLHSSPPASPQGSPHKGYTLIPSAKSDNLS 1262



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>PF21B_MOUSE (Q8C966) PHD finger protein 21B|
          Length = 487

 Score = 27.7 bits (60), Expect = 8.3
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -1

Query: 139 CRQ*LLKXGDDGVNWKALLVVIQSYCN*KAVSE 41
           C++  LK  D+GV W  +L ++ SY   K V E
Sbjct: 351 CQRKALKK-DEGVPWTGMLAIVHSYVTHKTVKE 382


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,620,944
Number of Sequences: 219361
Number of extensions: 268648
Number of successful extensions: 734
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 728
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 734
length of database: 80,573,946
effective HSP length: 55
effective length of database: 68,509,091
effective search space used: 1644218184
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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