ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags25e13
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC123842.4| Mus musculus BAC clone RP23-400N18 from chromosom... 40 2.4
2emb|BX649634.8| Zebrafish DNA sequence from clone CH211-284G18 i... 40 2.4
3gb|AC116309.2| Homo sapiens chromosome 5 clone RP11-106J9, compl... 40 2.4
4gb|AC124476.5| Mus musculus BAC clone RP24-93F9 from chromosome ... 40 2.4
5gb|AC008268.3|AC008268 Homo sapiens BAC clone RP11-34G16 from 2,... 40 2.4
6emb|AL935291.6| Zebrafish DNA sequence from clone CH211-226M23 i... 40 2.4
7emb|AL929546.8| Mouse DNA sequence from clone RP23-402K10 on chr... 40 2.4
8gb|AC116758.11| Mus musculus chromosome 8, clone RP23-383A10, co... 38 9.4
9ref|NM_001033642.1| Gallus gallus similar to complement componen... 38 9.4
10gb|DQ188033.1| Homo sapiens lipase, hormone-sensitive (LIPE) gen... 38 9.4
11gb|AC122246.5| Mus musculus BAC clone RP23-152K13 from 1, comple... 38 9.4
12gb|AC105951.9| Mus musculus chromosome 5, clone RP23-475D21, com... 38 9.4
13emb|AL583808.6| Human DNA sequence from clone RP11-262K1 on chro... 38 9.4
14emb|AL354796.21| Human DNA sequence from clone RP11-145E17 on ch... 38 9.4
15emb|AL049610.9|HS1055C14 Human DNA sequence from clone RP5-1055C... 38 9.4
16gb|AC156994.8| Mus musculus chromosome 5, clone RP23-312N12, com... 38 9.4
17gb|AC011497.6| Homo sapiens chromosome 19 clone CTB-50E14, compl... 38 9.4
18emb|BX677664.9| Zebrafish DNA sequence from clone DKEYP-122B11 i... 38 9.4
19emb|BX663501.9| Zebrafish DNA sequence from clone DKEY-117G20 in... 38 9.4
20gb|AC093318.52| Mus musculus strain C57BL/6J clone rp23-252h7 ma... 38 9.4
21gb|AC006136.4| Arabidopsis thaliana chromosome 2 clone T13H18 ma... 38 9.4
22gb|AC156984.9| Mus musculus chromosome 5, clone RP23-418H8, comp... 38 9.4
23emb|CR391135.1| Gallus gallus finished cDNA, clone ChEST208l12 38 9.4
24emb|BX248239.12| Zebrafish DNA sequence from clone CH211-213I9 i... 38 9.4
25dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 38 9.4
26dbj|AB074567.1| Gallus gallus CRES mRNA for complement regulator... 38 9.4
27gb|AC018366.39| Mus musculus strain 129/SvJ chromosome 5 clone m... 38 9.4
28gb|AC019046.4|AC019046 Homo sapiens BAC clone RP11-71D23 from 2,... 38 9.4
29gb|AC109925.4| Homo sapiens BAC clone RP11-398J16 from 4, comple... 38 9.4
30dbj|AP005824.4| Oryza sativa (japonica cultivar-group) genomic D... 38 9.4
31gb|AF016441.1| Caenorhabditis elegans cosmid M03F8, complete seq... 38 9.4
32emb|AL954146.8| Zebrafish DNA sequence from clone CH211-213I6 in... 38 9.4
33gb|AC018365.49| Mus musculus strain 129/SvJ clone mgs1-461b11 ma... 38 9.4
34dbj|AP005178.3| Oryza sativa (japonica cultivar-group) genomic D... 38 9.4
35gb|AC084416.36| Mus musculus strain C57BL/6J chromosome 5 clone ... 38 9.4
36gb|AC140326.3| Mus musculus BAC clone RP23-413D14 from 8, comple... 38 9.4
37gb|AC079445.28| Mus musculus strain C57BL/6J chromosome 5 clone ... 38 9.4
38gb|AC153017.4| Mus musculus BAC clone RP23-188L21 from chromosom... 38 9.4
39emb|X91804.1|HSIGMHAVH H.sapiens mRNA for Ig heavy chain variabl... 38 9.4
40emb|AJ402391.1|HSA402391 Homo sapiens partial IGHV1 gene for imm... 38 9.4 
>gb|AC123842.4| Mus musculus BAC clone RP23-400N18 from chromosome 10, complete
             sequence
          Length = 200997

 Score = 40.1 bits (20), Expect = 2.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 55    agaggcatcgtcgtcttgtt 74
             ||||||||||||||||||||
Sbjct: 36967 agaggcatcgtcgtcttgtt 36948
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>emb|BX649634.8| Zebrafish DNA sequence from clone CH211-284G18 in linkage group 2,
              complete sequence
          Length = 154030

 Score = 40.1 bits (20), Expect = 2.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 143    gaccagcagtcagatacaac 162
              ||||||||||||||||||||
Sbjct: 119820 gaccagcagtcagatacaac 119801
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>gb|AC116309.2| Homo sapiens chromosome 5 clone RP11-106J9, complete sequence
          Length = 176112

 Score = 40.1 bits (20), Expect = 2.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 18    gaagaaaagaagaggtaatt 37
             ||||||||||||||||||||
Sbjct: 10588 gaagaaaagaagaggtaatt 10607
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>gb|AC124476.5| Mus musculus BAC clone RP24-93F9 from chromosome 10, complete
            sequence
          Length = 169031

 Score = 40.1 bits (20), Expect = 2.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 55   agaggcatcgtcgtcttgtt 74
            ||||||||||||||||||||
Sbjct: 8569 agaggcatcgtcgtcttgtt 8588
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>gb|AC008268.3|AC008268 Homo sapiens BAC clone RP11-34G16 from 2, complete sequence
          Length = 187883

 Score = 40.1 bits (20), Expect = 2.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 163   gcagcgagctctgccctggagctgctgc 190
             |||| |||| ||||||||||||||||||
Sbjct: 18243 gcagagagcactgccctggagctgctgc 18216
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>emb|AL935291.6| Zebrafish DNA sequence from clone CH211-226M23 in linkage group 1,
              complete sequence
          Length = 174091

 Score = 40.1 bits (20), Expect = 2.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 61     atcgtcgtcttgtttgtcct 80
              ||||||||||||||||||||
Sbjct: 105885 atcgtcgtcttgtttgtcct 105866
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>emb|AL929546.8| Mouse DNA sequence from clone RP23-402K10 on chromosome 2, complete
             sequence
          Length = 130361

 Score = 40.1 bits (20), Expect = 2.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 71    tgtttgtccttctctcaagg 90
             ||||||||||||||||||||
Sbjct: 76142 tgtttgtccttctctcaagg 76123
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>gb|AC116758.11| Mus musculus chromosome 8, clone RP23-383A10, complete sequence
          Length = 190294

 Score = 38.2 bits (19), Expect = 9.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 170   gctctgccctggagctgct 188
             |||||||||||||||||||
Sbjct: 74517 gctctgccctggagctgct 74499
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>ref|NM_001033642.1| Gallus gallus similar to complement component (3b/4b) receptor-1
            isoform F precursor; complement component (3b/4b)
            receptor-1; C3-binding protein; CD35 antigen (LOC419851),
            mRNA
          Length = 2788

 Score = 38.2 bits (19), Expect = 9.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 160  aacgcagcgagctctgccc 178
            |||||||||||||||||||
Sbjct: 2301 aacgcagcgagctctgccc 2283
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>gb|DQ188033.1| Homo sapiens lipase, hormone-sensitive (LIPE) gene, complete cds
          Length = 29466

 Score = 38.2 bits (19), Expect = 9.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 169  agctctgccctggagctgc 187
            |||||||||||||||||||
Sbjct: 8787 agctctgccctggagctgc 8805
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>gb|AC122246.5| Mus musculus BAC clone RP23-152K13 from 1, complete sequence
          Length = 203739

 Score = 38.2 bits (19), Expect = 9.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 172    tctgccctggagctgctgc 190
              |||||||||||||||||||
Sbjct: 164353 tctgccctggagctgctgc 164335
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>gb|AC105951.9| Mus musculus chromosome 5, clone RP23-475D21, complete sequence
          Length = 178610

 Score = 38.2 bits (19), Expect = 9.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 67    gtcttgtttgtccttctct 85
             |||||||||||||||||||
Sbjct: 23000 gtcttgtttgtccttctct 23018
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>emb|AL583808.6| Human DNA sequence from clone RP11-262K1 on chromosome 1 Contains a
             novel gene, complete sequence
          Length = 174642

 Score = 38.2 bits (19), Expect = 9.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 18    gaagaaaagaagaggtaat 36
             |||||||||||||||||||
Sbjct: 23662 gaagaaaagaagaggtaat 23680
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>emb|AL354796.21| Human DNA sequence from clone RP11-145E17 on chromosome 9 Contains the
             5'end of a novel gene (FLJ00318), a novel gene and two CpG
             islands, complete sequence
          Length = 156466

 Score = 38.2 bits (19), Expect = 9.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 164   cagcgagctctgccctgga 182
             |||||||||||||||||||
Sbjct: 18052 cagcgagctctgccctgga 18070
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>emb|AL049610.9|HS1055C14 Human DNA sequence from clone RP5-1055C14 on chromosome Xq22.1-22.3
             Contains the TCEAL1 gene for transcription elongation
             factor A (SII)-like 1, a novel gene, a novel pseudogene
             (LOC139779), the MORF4L2 gene for mortality factor 4 like
             2, a novel gene, the 3' end of a gene for the possible
             ortholog of mouse glycine receptor alpha 4 subunit (GLRA4)
             and a novel gene (MGC39655), complete sequence
          Length = 100269

 Score = 38.2 bits (19), Expect = 9.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 24    aagaagaggtaattataca 42
             |||||||||||||||||||
Sbjct: 23728 aagaagaggtaattataca 23710
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>gb|AC156994.8| Mus musculus chromosome 5, clone RP23-312N12, complete sequence
          Length = 166581

 Score = 38.2 bits (19), Expect = 9.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 89     ggggcaaagccacaagcac 107
              |||||||||||||||||||
Sbjct: 164373 ggggcaaagccacaagcac 164391
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>gb|AC011497.6| Homo sapiens chromosome 19 clone CTB-50E14, complete sequence
          Length = 168586

 Score = 38.2 bits (19), Expect = 9.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 169   agctctgccctggagctgc 187
             |||||||||||||||||||
Sbjct: 79248 agctctgccctggagctgc 79266
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>emb|BX677664.9| Zebrafish DNA sequence from clone DKEYP-122B11 in linkage group 2,
             complete sequence
          Length = 170975

 Score = 38.2 bits (19), Expect = 9.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 144   accagcagtcagatacaac 162
             |||||||||||||||||||
Sbjct: 51479 accagcagtcagatacaac 51497
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>emb|BX663501.9| Zebrafish DNA sequence from clone DKEY-117G20 in linkage group 2,
             complete sequence
          Length = 88647

 Score = 38.2 bits (19), Expect = 9.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 88    aggggcaaagccacaagca 106
             |||||||||||||||||||
Sbjct: 28428 aggggcaaagccacaagca 28410
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>gb|AC093318.52| Mus musculus strain C57BL/6J clone rp23-252h7 map 1, complete sequence
          Length = 198381

 Score = 38.2 bits (19), Expect = 9.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 171    ctctgccctggagctgctg 189
              |||||||||||||||||||
Sbjct: 130728 ctctgccctggagctgctg 130746
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>gb|AC006136.4| Arabidopsis thaliana chromosome 2 clone T13H18 map GPC6, complete
             sequence
          Length = 82098

 Score = 38.2 bits (19), Expect = 9.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 19    aagaaaagaagaggtaatt 37
             |||||||||||||||||||
Sbjct: 22937 aagaaaagaagaggtaatt 22919
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>gb|AC156984.9| Mus musculus chromosome 5, clone RP23-418H8, complete sequence
          Length = 171080

 Score = 38.2 bits (19), Expect = 9.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 89    ggggcaaagccacaagcac 107
             |||||||||||||||||||
Sbjct: 97926 ggggcaaagccacaagcac 97908
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>emb|CR391135.1| Gallus gallus finished cDNA, clone ChEST208l12
          Length = 862

 Score = 38.2 bits (19), Expect = 9.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 160 aacgcagcgagctctgccc 178
           |||||||||||||||||||
Sbjct: 407 aacgcagcgagctctgccc 389
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>emb|BX248239.12| Zebrafish DNA sequence from clone CH211-213I9 in linkage group 2,
             complete sequence
          Length = 200856

 Score = 38.2 bits (19), Expect = 9.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 34    aattatacactacatgaca 52
             |||||||||||||||||||
Sbjct: 36917 aattatacactacatgaca 36899
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score = 38.2 bits (19), Expect = 9.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 66      cgtcttgtttgtccttctc 84
               |||||||||||||||||||
Sbjct: 8482597 cgtcttgtttgtccttctc 8482615
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>dbj|AB074567.1| Gallus gallus CRES mRNA for complement regulatory soluble protein,
            complete cds
          Length = 2788

 Score = 38.2 bits (19), Expect = 9.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 160  aacgcagcgagctctgccc 178
            |||||||||||||||||||
Sbjct: 2301 aacgcagcgagctctgccc 2283
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>gb|AC018366.39| Mus musculus strain 129/SvJ chromosome 5 clone mgs1-458e5, complete
             sequence
          Length = 126143

 Score = 38.2 bits (19), Expect = 9.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 89    ggggcaaagccacaagcac 107
             |||||||||||||||||||
Sbjct: 63529 ggggcaaagccacaagcac 63547
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>gb|AC019046.4|AC019046 Homo sapiens BAC clone RP11-71D23 from 2, complete sequence
          Length = 177703

 Score = 38.2 bits (19), Expect = 9.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 34    aattatacactacatgaca 52
             |||||||||||||||||||
Sbjct: 34574 aattatacactacatgaca 34592
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>gb|AC109925.4| Homo sapiens BAC clone RP11-398J16 from 4, complete sequence
          Length = 160855

 Score = 38.2 bits (19), Expect = 9.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 19    aagaaaagaagaggtaatt 37
             |||||||||||||||||||
Sbjct: 77021 aagaaaagaagaggtaatt 77003
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>dbj|AP005824.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0669H03
          Length = 167878

 Score = 38.2 bits (19), Expect = 9.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 66    cgtcttgtttgtccttctc 84
             |||||||||||||||||||
Sbjct: 15065 cgtcttgtttgtccttctc 15083
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>gb|AF016441.1| Caenorhabditis elegans cosmid M03F8, complete sequence
          Length = 30415

 Score = 38.2 bits (19), Expect = 9.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 13   acaacgaagaaaagaagag 31
            |||||||||||||||||||
Sbjct: 8471 acaacgaagaaaagaagag 8453
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>emb|AL954146.8| Zebrafish DNA sequence from clone CH211-213I6 in linkage group 17,
             complete sequence
          Length = 207669

 Score = 38.2 bits (19), Expect = 9.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 144   accagcagtcagatacaac 162
             |||||||||||||||||||
Sbjct: 13493 accagcagtcagatacaac 13511
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>gb|AC018365.49| Mus musculus strain 129/SvJ clone mgs1-461b11 map 5, complete sequence
          Length = 117052

 Score = 38.2 bits (19), Expect = 9.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 89    ggggcaaagccacaagcac 107
             |||||||||||||||||||
Sbjct: 18847 ggggcaaagccacaagcac 18829
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>dbj|AP005178.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
              clone:OSJNBb0056I06
          Length = 138653

 Score = 38.2 bits (19), Expect = 9.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 66     cgtcttgtttgtccttctc 84
              |||||||||||||||||||
Sbjct: 114190 cgtcttgtttgtccttctc 114208
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>gb|AC084416.36| Mus musculus strain C57BL/6J chromosome 5 clone rp23-430i3, complete
             sequence
          Length = 183540

 Score = 38.2 bits (19), Expect = 9.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 67    gtcttgtttgtccttctct 85
             |||||||||||||||||||
Sbjct: 96657 gtcttgtttgtccttctct 96675
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>gb|AC140326.3| Mus musculus BAC clone RP23-413D14 from 8, complete sequence
          Length = 224003

 Score = 38.2 bits (19), Expect = 9.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 171  ctctgccctggagctgctg 189
            |||||||||||||||||||
Sbjct: 7406 ctctgccctggagctgctg 7424
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>gb|AC079445.28| Mus musculus strain C57BL/6J chromosome 5 clone rp23-403l21, complete
              sequence
          Length = 189517

 Score = 38.2 bits (19), Expect = 9.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 89     ggggcaaagccacaagcac 107
              |||||||||||||||||||
Sbjct: 177666 ggggcaaagccacaagcac 177648
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>gb|AC153017.4| Mus musculus BAC clone RP23-188L21 from chromosome 8, complete sequence
          Length = 242385

 Score = 38.2 bits (19), Expect = 9.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 171   ctctgccctggagctgctg 189
             |||||||||||||||||||
Sbjct: 92807 ctctgccctggagctgctg 92825
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>emb|X91804.1|HSIGMHAVH H.sapiens mRNA for Ig heavy chain variable and joining regions
          Length = 363

 Score = 38.2 bits (19), Expect = 9.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 171 ctctgccctggagctgctg 189
           |||||||||||||||||||
Sbjct: 202 ctctgccctggagctgctg 184
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>emb|AJ402391.1|HSA402391 Homo sapiens partial IGHV1 gene for immunoglobulin heavy chain
           variable region, donor HH, 42
          Length = 275

 Score = 38.2 bits (19), Expect = 9.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 171 ctctgccctggagctgctg 189
           |||||||||||||||||||
Sbjct: 107 ctctgccctggagctgctg 89


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,674,524
Number of Sequences: 3902068
Number of extensions: 1674524
Number of successful extensions: 125438
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 125319
Number of HSP's gapped (non-prelim): 119
length of query: 190
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 168
effective length of database: 17,147,199,772
effective search space: 2880729561696
effective search space used: 2880729561696
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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