ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags25e07 |
|---|---|
| Clone Library Name | barley_pub |
>CLF1_USTMA (Q4PB37) Pre-mRNA-splicing factor CLF1| Length = 781 Score = 37.0 bits (84), Expect = 0.033 Identities = 23/85 (27%), Positives = 41/85 (48%) Frame = -1 Query: 521 QARKMYKRFLALPRPSLKFFQFCIELEANLASIGNSDGLANARKLYDSATSLYPQERELW 342 + R +Y+R L + L + E E + ++ +AR LYD A S+ P+ +LW Sbjct: 88 RCRSIYERALDVEPHHLPLWLRYTEQELKMRNV------QHARNLYDRAVSILPRIDQLW 141 Query: 341 RKYYNMELTVGTSETSNAIYWRARK 267 KY ++E +G + ++ R K Sbjct: 142 YKYVHLEELLGNIPGTRQVFERWMK 166 Score = 33.9 bits (76), Expect = 0.28 Identities = 18/66 (27%), Positives = 31/66 (46%) Frame = -1 Query: 479 PSLKFFQFCIELEANLASIGNSDGLANARKLYDSATSLYPQERELWRKYYNMELTVGTSE 300 P LK F IELE +L ARK+Y+ A P + W ++ +E + ++ Sbjct: 456 PKLKLFSSYIELEVSLKEFDR------ARKIYEKALEWDPTNSQTWVRFAELEKNLFDTD 509 Query: 299 TSNAIY 282 + A++ Sbjct: 510 RARALF 515
>CLF1_EMENI (Q5BDX1) Pre-mRNA-splicing factor clf1| Length = 602 Score = 36.6 bits (83), Expect = 0.043 Identities = 24/82 (29%), Positives = 41/82 (50%) Frame = -1 Query: 521 QARKMYKRFLALPRPSLKFFQFCIELEANLASIGNSDGLANARKLYDSATSLYPQERELW 342 +AR +++R L + S+ + IE E +I + AR L D A ++ P+ +LW Sbjct: 19 RARSIFERALDVDSTSVPLWIRYIESEMRNRNINH------ARNLLDRAVTILPRVDKLW 72 Query: 341 RKYYNMELTVGTSETSNAIYWR 276 KY ME T+G + ++ R Sbjct: 73 YKYVYMEETLGNIPGTRQVFER 94 Score = 30.0 bits (66), Expect = 4.0 Identities = 22/82 (26%), Positives = 34/82 (41%) Frame = -1 Query: 479 PSLKFFQFCIELEANLASIGNSDGLANARKLYDSATSLYPQERELWRKYYNMELTVGTSE 300 P K F+ I+LE L R LY+ P + W +Y +E + +E Sbjct: 363 PKDKLFRGYIDLERQLFEF------VRCRTLYEKQIEWNPSNSQSWIQYAELERGLDDTE 416 Query: 299 TSNAIYWRARKVLNDSTVLDIP 234 + AIY ++ D LD+P Sbjct: 417 RARAIY----ELGIDQPTLDMP 434
>CLF1_ASPFU (Q4WT84) Pre-mRNA-splicing factor clf1| Length = 676 Score = 35.0 bits (79), Expect = 0.13 Identities = 23/82 (28%), Positives = 41/82 (50%) Frame = -1 Query: 521 QARKMYKRFLALPRPSLKFFQFCIELEANLASIGNSDGLANARKLYDSATSLYPQERELW 342 +AR +++R L + S+ + IE E +I + AR L D A ++ P+ + W Sbjct: 90 RARSIFERALDVNPTSVVLWIRYIESEMRNRNINH------ARNLLDRAVTILPRVDKFW 143 Query: 341 RKYYNMELTVGTSETSNAIYWR 276 KY ME T+G + + ++ R Sbjct: 144 YKYVYMEETLGNIQGTRQVFER 165 Score = 31.2 bits (69), Expect = 1.8 Identities = 23/82 (28%), Positives = 35/82 (42%) Frame = -1 Query: 479 PSLKFFQFCIELEANLASIGNSDGLANARKLYDSATSLYPQERELWRKYYNMELTVGTSE 300 P K F+ I+LE L R LY+ P + W KY +E + SE Sbjct: 434 PKDKLFRGYIDLERQLFEF------VRCRTLYEKQIEWNPANSQSWIKYAELERGLDDSE 487 Query: 299 TSNAIYWRARKVLNDSTVLDIP 234 + AI+ ++ D +LD+P Sbjct: 488 RARAIF----ELGIDQPMLDMP 505
>CLF1_YEAST (Q12309) Pre-mRNA-splicing factor CLF1 (Crooked neck-like factor 1)| (PRP19-associated complex protein 77) (Synthetic lethal with CDC40 protein 3) Length = 687 Score = 34.7 bits (78), Expect = 0.16 Identities = 22/80 (27%), Positives = 36/80 (45%) Frame = -1 Query: 521 QARKMYKRFLALPRPSLKFFQFCIELEANLASIGNSDGLANARKLYDSATSLYPQERELW 342 +ARK+ + + L P K F+ IELE L RK+Y+ P + ++W Sbjct: 422 KARKILGKAIGLC-PKAKTFKGYIELEVKLKEFDR------VRKIYEKFIEFQPSDLQIW 474 Query: 341 RKYYNMELTVGTSETSNAIY 282 +Y +E +G + IY Sbjct: 475 SQYGELEENLGDWDRVRGIY 494
>CRNL1_RAT (P63155) Crooked neck-like protein 1 (Crooked neck homolog)| (Crooked neck protein) Length = 690 Score = 33.9 bits (76), Expect = 0.28 Identities = 21/66 (31%), Positives = 28/66 (42%) Frame = -1 Query: 479 PSLKFFQFCIELEANLASIGNSDGLANARKLYDSATSLYPQERELWRKYYNMELTVGTSE 300 P K F+ IELE L RKLY+ P+ W K+ +E +G E Sbjct: 443 PKNKLFKGYIELELQLREFDR------CRKLYEKFLEFGPENCTSWIKFAELETILGDIE 496 Query: 299 TSNAIY 282 + AIY Sbjct: 497 RARAIY 502 Score = 28.9 bits (63), Expect = 9.0 Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 1/82 (1%) Frame = -1 Query: 518 ARKMYKRFLA-LPRPSLKFFQFCIELEANLASIGNSDGLANARKLYDSATSLYPQERELW 342 AR ++ R + LPR + ++++ E +GN +A AR++++ P+E + W Sbjct: 134 ARNIWDRAITTLPRVNQFWYKYTYMEEM----LGN---VAGARQVFERWMEWQPEE-QAW 185 Query: 341 RKYYNMELTVGTSETSNAIYWR 276 Y N EL E + IY R Sbjct: 186 HSYINFELRYKEVERARTIYER 207
>CRNL1_MOUSE (P63154) Crooked neck-like protein 1 (Crooked neck homolog)| Length = 690 Score = 33.9 bits (76), Expect = 0.28 Identities = 21/66 (31%), Positives = 28/66 (42%) Frame = -1 Query: 479 PSLKFFQFCIELEANLASIGNSDGLANARKLYDSATSLYPQERELWRKYYNMELTVGTSE 300 P K F+ IELE L RKLY+ P+ W K+ +E +G E Sbjct: 443 PKNKLFKGYIELELQLREFDR------CRKLYEKFLEFGPENCTSWIKFAELETILGDIE 496 Query: 299 TSNAIY 282 + AIY Sbjct: 497 RARAIY 502 Score = 28.9 bits (63), Expect = 9.0 Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 1/82 (1%) Frame = -1 Query: 518 ARKMYKRFLA-LPRPSLKFFQFCIELEANLASIGNSDGLANARKLYDSATSLYPQERELW 342 AR ++ R + LPR + ++++ E +GN +A AR++++ P+E + W Sbjct: 134 ARNIWDRAITTLPRVNQFWYKYTYMEEM----LGN---VAGARQVFERWMEWQPEE-QAW 185 Query: 341 RKYYNMELTVGTSETSNAIYWR 276 Y N EL E + IY R Sbjct: 186 HSYINFELRYKEVERARTIYER 207
>CRNL1_HUMAN (Q9BZJ0) Crooked neck-like protein 1 (Crooked neck homolog) (hCrn)| Length = 848 Score = 33.5 bits (75), Expect = 0.36 Identities = 20/66 (30%), Positives = 28/66 (42%) Frame = -1 Query: 479 PSLKFFQFCIELEANLASIGNSDGLANARKLYDSATSLYPQERELWRKYYNMELTVGTSE 300 P K F+ IELE L RKLY+ P+ W K+ +E +G + Sbjct: 604 PKNKLFKVYIELELQLREFDR------CRKLYEKFLEFGPENCTSWIKFAELETILGDID 657 Query: 299 TSNAIY 282 + AIY Sbjct: 658 RARAIY 663
>CLF1_YARLI (Q6C186) Pre-mRNA-splicing factor CLF1| Length = 676 Score = 33.1 bits (74), Expect = 0.48 Identities = 22/80 (27%), Positives = 34/80 (42%) Frame = -1 Query: 521 QARKMYKRFLALPRPSLKFFQFCIELEANLASIGNSDGLANARKLYDSATSLYPQERELW 342 +ARK+ R L + ++ I LEA L RKLYD + + W Sbjct: 421 EARKILGRGLGMSGGKPALYKGYIALEAKLREFDR------CRKLYDKYVEKFAEFAAPW 474 Query: 341 RKYYNMELTVGTSETSNAIY 282 +Y +E +G E + AI+ Sbjct: 475 MEYAELEQMLGDEERARAIF 494 Score = 30.0 bits (66), Expect = 4.0 Identities = 22/82 (26%), Positives = 38/82 (46%) Frame = -1 Query: 521 QARKMYKRFLALPRPSLKFFQFCIELEANLASIGNSDGLANARKLYDSATSLYPQERELW 342 +AR +++R L + + + I+ E +I + AR L D A +L P+ +LW Sbjct: 84 RARSVFERALEVNSTHVPTWIRYIQCELKEKNINH------ARNLLDRAVTLLPRVDKLW 137 Query: 341 RKYYNMELTVGTSETSNAIYWR 276 Y E T+G A++ R Sbjct: 138 FTYVATEETLGNIAGCRAVFER 159
>SYF1_CRYNE (Q5KH46) Pre-mRNA-splicing factor SYF1| Length = 1031 Score = 32.7 bits (73), Expect = 0.62 Identities = 16/53 (30%), Positives = 26/53 (49%) Frame = -1 Query: 449 ELEANLASIGNSDGLANARKLYDSATSLYPQERELWRKYYNMELTVGTSETSN 291 E+ LAS DGL +Y+ A +++P +LW+ YY + E +N Sbjct: 78 EILGPLASKNARDGLQRLVSIYERAIAVFPTSYKLWKAYYLTRQSYVLGELTN 130
>PRP39_SCHPO (O74970) Pre-mRNA-processing protein prp39| Length = 612 Score = 32.3 bits (72), Expect = 0.81 Identities = 17/57 (29%), Positives = 24/57 (42%) Frame = -1 Query: 446 LEANLASIGNSDGLANARKLYDSATSLYPQERELWRKYYNMELTVGTSETSNAIYWR 276 LE + + + R +YD YP W+KY + E V +E S IY R Sbjct: 41 LEGGVGRNSSKQAINTLRSVYDRFLGKYPLLFGYWKKYADFEFFVAGAEASEHIYER 97
>CLF1_SCHPO (P87312) Pre-mRNA-splicing factor clf1 (Complexed with cdc5 protein| 4) (Cell cycle control protein cwf4) Length = 674 Score = 32.3 bits (72), Expect = 0.81 Identities = 22/82 (26%), Positives = 38/82 (46%) Frame = -1 Query: 521 QARKMYKRFLALPRPSLKFFQFCIELEANLASIGNSDGLANARKLYDSATSLYPQERELW 342 +AR +++R L + + + IE E +I + AR L+D A + P+ +LW Sbjct: 88 RARSVFERALDVDSTYIPLWLKYIECEMKNRNINH------ARNLFDRAVTQLPRVDKLW 141 Query: 341 RKYYNMELTVGTSETSNAIYWR 276 KY ME +G ++ R Sbjct: 142 YKYVYMEEMLGNITGCRQVFER 163
>PFA3_ASPFU (Q4WZL8) Palmitoyltransferase pfa3 (EC 2.3.1.-) (Protein fatty| acyltransferase 3) Length = 548 Score = 30.0 bits (66), Expect = 4.0 Identities = 17/47 (36%), Positives = 25/47 (53%) Frame = -3 Query: 240 HSP*LATCAHVYHVIPFLIVLICLLL*AYVSQLDISFGSFFCWSEEF 100 H P LATC +Y+ FL+ LI L +V D + + + W+E F Sbjct: 159 HCPWLATCVGLYNYKAFLLFLIYTSLFCWV---DFAVSATWIWTEVF 202
>SART3_MOUSE (Q9JLI8) Squamous cell carcinoma antigen recognized by T-cells 3| (SART-3) (mSART-3) (Tumor-rejection antigen SART3) Length = 962 Score = 30.0 bits (66), Expect = 4.0 Identities = 23/88 (26%), Positives = 40/88 (45%), Gaps = 1/88 (1%) Frame = -1 Query: 515 RKMYKRFLALPRPSLKFFQFCIELEANLASIGNSDGLANARKLYDSA-TSLYPQERELWR 339 +++ +RF PS Q +EA L + + AR+L+DS T + +W Sbjct: 459 QEVEERFSESGDPSCLIMQSWARVEARLCN-----NMQKARELWDSIMTRGNAKYANMWL 513 Query: 338 KYYNMELTVGTSETSNAIYWRARKVLND 255 +YYN+E G ++ RA + +D Sbjct: 514 EYYNLERAHGDTQHCRKALHRAVQCTSD 541
>SART3_HUMAN (Q15020) Squamous cell carcinoma antigen recognized by T-cells 3| (SART-3) (hSART-3) (Tat-interacting protein of 110 kDa) (Tip110) Length = 963 Score = 29.6 bits (65), Expect = 5.3 Identities = 23/88 (26%), Positives = 40/88 (45%), Gaps = 1/88 (1%) Frame = -1 Query: 515 RKMYKRFLALPRPSLKFFQFCIELEANLASIGNSDGLANARKLYDSA-TSLYPQERELWR 339 +++ +RF PS Q +EA L + + AR+L+DS T + +W Sbjct: 458 QEVEERFNESGDPSCVIMQNWARIEARLCN-----NMQKARELWDSIMTRGNAKYANMWL 512 Query: 338 KYYNMELTVGTSETSNAIYWRARKVLND 255 +YYN+E G ++ RA + +D Sbjct: 513 EYYNLERAHGDTQHCRKALHRAVQCTSD 540
>SART3_PONPY (Q5REG1) Squamous cell carcinoma antigen recognized by T-cells 3| (SART-3) Length = 981 Score = 29.6 bits (65), Expect = 5.3 Identities = 23/88 (26%), Positives = 40/88 (45%), Gaps = 1/88 (1%) Frame = -1 Query: 515 RKMYKRFLALPRPSLKFFQFCIELEANLASIGNSDGLANARKLYDSA-TSLYPQERELWR 339 +++ +RF PS Q +EA L + + AR+L+DS T + +W Sbjct: 476 QEVEERFNESGDPSCVIMQNWARIEARLCN-----NMQKARELWDSIMTRGNAKYANMWL 530 Query: 338 KYYNMELTVGTSETSNAIYWRARKVLND 255 +YYN+E G ++ RA + +D Sbjct: 531 EYYNLERAHGDTQHCRKALHRAVQCTSD 558
>CLF1_CRYNV (Q9HF03) Pre-mRNA-splicing factor CLF1 (crooked-neck-like protein| 1) Length = 724 Score = 29.3 bits (64), Expect = 6.9 Identities = 18/67 (26%), Positives = 34/67 (50%) Frame = -1 Query: 521 QARKMYKRFLALPRPSLKFFQFCIELEANLASIGNSDGLANARKLYDSATSLYPQERELW 342 ++R +++R L + S+ + ++E +I + AR L+D A +L P+ LW Sbjct: 93 RSRSVFERALDVDPRSVDLWIKYTDMELKARNINH------ARNLFDRAITLLPRVDALW 146 Query: 341 RKYYNME 321 KY +E Sbjct: 147 YKYVYLE 153
>CLF1_CANGA (Q6FW76) Pre-mRNA-splicing factor CLF1| Length = 695 Score = 29.3 bits (64), Expect = 6.9 Identities = 21/71 (29%), Positives = 31/71 (43%) Frame = -1 Query: 521 QARKMYKRFLALPRPSLKFFQFCIELEANLASIGNSDGLANARKLYDSATSLYPQERELW 342 +AR + R L L P K F++ I+LE L R LY++ P + W Sbjct: 418 KARSILGRSLGLC-PKRKTFKYYIDLETKLREFDR------VRILYENFLKFDPLNLDTW 470 Query: 341 RKYYNMELTVG 309 R Y E ++G Sbjct: 471 RAYVEFEDSLG 481
>CLF1_CRYNE (Q5KNE9) Pre-mRNA-splicing factor CLF1| Length = 726 Score = 29.3 bits (64), Expect = 6.9 Identities = 18/67 (26%), Positives = 34/67 (50%) Frame = -1 Query: 521 QARKMYKRFLALPRPSLKFFQFCIELEANLASIGNSDGLANARKLYDSATSLYPQERELW 342 ++R +++R L + S+ + ++E +I + AR L+D A +L P+ LW Sbjct: 93 RSRSVFERALDVDPRSVDLWIKYTDMELKARNINH------ARNLFDRAITLLPRVDALW 146 Query: 341 RKYYNME 321 KY +E Sbjct: 147 YKYVYLE 153
>DPH1_CRYNE (Q5KN81) Diphthamide biosynthesis protein 1| Length = 529 Score = 29.3 bits (64), Expect = 6.9 Identities = 13/31 (41%), Positives = 18/31 (58%) Frame = +1 Query: 397 AFARPSLFPIDARLASSSMQNWKNLRLGRGK 489 AF+RP L P +A +A ++ W L L GK Sbjct: 451 AFSRPLLSPYEASVAVGRVKGWGGLSLDNGK 481
>IL4_MESAU (Q60440) Interleukin-4 precursor (IL-4) (B-cell stimulatory factor| 1) (BSF-1) (Lymphocyte stimulatory factor 1) Length = 147 Score = 28.9 bits (63), Expect = 9.0 Identities = 16/43 (37%), Positives = 23/43 (53%) Frame = -1 Query: 482 RPSLKFFQFCIELEANLASIGNSDGLANARKLYDSATSLYPQE 354 R S F +F + E L NS L + +KLY +SL+PQ+ Sbjct: 70 RASQGFRKFYFQHEVTLCLKNNSRVLKDLKKLYRGISSLFPQK 112 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 73,014,688 Number of Sequences: 219361 Number of extensions: 1383162 Number of successful extensions: 3265 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 3146 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3264 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3985467738 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
