ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags25e03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC159378.8| Mus musculus 10 BAC RP23-199N18 (Roswell Park Can... 42 1.5
2emb|BX248357.1| Corynebacterium diphtheriae gravis NCTC13129, co... 40 5.9
3dbj|AP008231.1| Synechococcus elongatus PCC 6301 DNA, complete g... 40 5.9
4gb|AC171276.3| Pan troglodytes BAC clone CH251-740N2 from chromo... 40 5.9
5gb|AC169792.2| Rhesus Macaque BAC CH250-117K11 (Children's Hosp... 40 5.9
6gb|CP000100.1| Synechococcus elongatus PCC 7942, complete genome 40 5.9

>gb|AC159378.8| Mus musculus 10 BAC RP23-199N18 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 202745

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 233    ggctatcatagagccgaagca 253
              |||||||||||||||||||||
Sbjct: 123733 ggctatcatagagccgaagca 123713



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>emb|BX248357.1| Corynebacterium diphtheriae gravis NCTC13129, complete genome; segment
             4/8
          Length = 349535

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 247   cgaagcagcgatcaatacaa 266
             ||||||||||||||||||||
Sbjct: 60024 cgaagcagcgatcaatacaa 60005



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>dbj|AP008231.1| Synechococcus elongatus PCC 6301 DNA, complete genome
          Length = 2696255

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 204     agcggttgttgtctgccatt 223
               ||||||||||||||||||||
Sbjct: 1983608 agcggttgttgtctgccatt 1983589



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>gb|AC171276.3| Pan troglodytes BAC clone CH251-740N2 from chromosome unknown, complete
             sequence
          Length = 202258

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 86    gggaataatcagttttatgt 105
             ||||||||||||||||||||
Sbjct: 17010 gggaataatcagttttatgt 17029



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>gb|AC169792.2| Rhesus Macaque  BAC CH250-117K11 (Children's Hospital Oakland Research
             Institute Rhesus macaque Adult Male BAC Library) complete
             sequence
          Length = 186393

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 86    gggaataatcagttttatgt 105
             ||||||||||||||||||||
Sbjct: 37722 gggaataatcagttttatgt 37741



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>gb|CP000100.1| Synechococcus elongatus PCC 7942, complete genome
          Length = 2695903

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 204     agcggttgttgtctgccatt 223
               ||||||||||||||||||||
Sbjct: 2333420 agcggttgttgtctgccatt 2333439


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,451,970
Number of Sequences: 3902068
Number of extensions: 2451970
Number of successful extensions: 42184
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 42171
Number of HSP's gapped (non-prelim): 13
length of query: 439
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 417
effective length of database: 17,147,199,772
effective search space: 7150382304924
effective search space used: 7150382304924
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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