ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags25e02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CALX_SOYBN (Q39817) Calnexin homolog precursor 77 5e-14
2CALX_PEA (O82709) Calnexin homolog precursor 73 5e-13
3CALX_HELTU (Q39994) Calnexin homolog precursor 70 6e-12
4CALX2_ARATH (Q38798) Calnexin homolog 2 precursor 69 8e-12
5CALX1_ARATH (P29402) Calnexin homolog 1 precursor 60 4e-09
6SREC2_HUMAN (Q96GP6) Scavenger receptor class F member 2 precurs... 32 1.8
7KRA56_HUMAN (Q6L8G9) Keratin-associated protein 5-6 (Keratin-ass... 31 3.1
8ZNF77_HUMAN (Q15935) Zinc finger protein 77 (ZNFpT1) 30 4.0

>CALX_SOYBN (Q39817) Calnexin homolog precursor|
          Length = 546

 Score = 76.6 bits (187), Expect = 5e-14
 Identities = 36/53 (67%), Positives = 42/53 (79%)
 Frame = -3

Query: 517 LYKIADIPFLEPYKIKIIDLIEKGEKQPNITISILASVAVILVTVLFRTIFGG 359
           LYKIADIPFL  +K KI DLIEK EKQPN+TI IL +V V+ V++ FR IFGG
Sbjct: 445 LYKIADIPFLSEHKSKIFDLIEKAEKQPNLTIGILVAVVVVFVSIFFRLIFGG 497



to top

>CALX_PEA (O82709) Calnexin homolog precursor|
          Length = 551

 Score = 73.2 bits (178), Expect = 5e-13
 Identities = 34/53 (64%), Positives = 42/53 (79%)
 Frame = -3

Query: 517 LYKIADIPFLEPYKIKIIDLIEKGEKQPNITISILASVAVILVTVLFRTIFGG 359
           LYKIADI FL   K KII++IEKGEKQPN+TI I+ SV ++ V++ FR IFGG
Sbjct: 450 LYKIADIAFLSGQKEKIIEIIEKGEKQPNLTIGIIVSVVIVFVSIFFRLIFGG 502



to top

>CALX_HELTU (Q39994) Calnexin homolog precursor|
          Length = 540

 Score = 69.7 bits (169), Expect = 6e-12
 Identities = 28/53 (52%), Positives = 43/53 (81%)
 Frame = -3

Query: 517 LYKIADIPFLEPYKIKIIDLIEKGEKQPNITISILASVAVILVTVLFRTIFGG 359
           LYKIAD+PFL  +K+K+++LIEK E QPNITI ++ S+ V++ ++L + +FGG
Sbjct: 439 LYKIADLPFLGDHKVKVLELIEKAETQPNITIGVIVSIIVVIFSILLKLLFGG 491



to top

>CALX2_ARATH (Q38798) Calnexin homolog 2 precursor|
          Length = 532

 Score = 69.3 bits (168), Expect = 8e-12
 Identities = 32/74 (43%), Positives = 45/74 (60%)
 Frame = -3

Query: 517 LYKIADIPFLEPYKIKIIDLIEKGEKQPNITISILASVAVILVTVLFRTIFGGXXXXXXX 338
           LYK+ADI FL  YK KI++LIEK E QPN+TI +L S+ ++ +++ F+ IFGG       
Sbjct: 438 LYKVADISFLSAYKSKIMELIEKAETQPNLTIGVLISIVIVFLSLFFKLIFGGAKAKVEK 497

Query: 337 XXXXXXXXPSATEA 296
                    S +EA
Sbjct: 498 KKPETAAETSTSEA 511



to top

>CALX1_ARATH (P29402) Calnexin homolog 1 precursor|
          Length = 530

 Score = 60.5 bits (145), Expect = 4e-09
 Identities = 26/53 (49%), Positives = 38/53 (71%)
 Frame = -3

Query: 517 LYKIADIPFLEPYKIKIIDLIEKGEKQPNITISILASVAVILVTVLFRTIFGG 359
           L K+AD+ FL  YK KI +LIEK E+QPN+TI +L ++ V+  ++  + IFGG
Sbjct: 436 LNKVADLSFLSAYKSKITELIEKAEQQPNLTIGVLVAIVVVFFSLFLKLIFGG 488



to top

>SREC2_HUMAN (Q96GP6) Scavenger receptor class F member 2 precursor (Scavenger|
           receptor expressed by endothelial cells 2 protein)
           (SREC-II) (SRECRP-1)
          Length = 866

 Score = 31.6 bits (70), Expect = 1.8
 Identities = 14/46 (30%), Positives = 20/46 (43%), Gaps = 4/46 (8%)
 Frame = -2

Query: 416 FGLSCCHPCYCALQNHFRWQEGSGTCEA----RCCGEEAQCHGSRC 291
           +G  C   CYC+  +    Q G+  C A    R C  +  C+ S C
Sbjct: 177 WGAQCASACYCSATSRCDPQTGACLCHAGWWGRSCNNQCACNSSPC 222



to top

>KRA56_HUMAN (Q6L8G9) Keratin-associated protein 5-6 (Keratin-associated protein|
           5.6) (Ultrahigh sulfur keratin-associated protein 5.6)
          Length = 129

 Score = 30.8 bits (68), Expect = 3.1
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -2

Query: 407 SCCHPCYCALQNHFRWQEGSGTCEARCC 324
           SCC PCYC+         GS  C++ CC
Sbjct: 89  SCCKPCYCSSGC------GSSCCQSSCC 110



to top

>ZNF77_HUMAN (Q15935) Zinc finger protein 77 (ZNFpT1)|
          Length = 545

 Score = 30.4 bits (67), Expect = 4.0
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = -2

Query: 392 CYCALQNHFRWQEGSGTCEARCCGEEAQCHGS 297
           CY + ++H R   G   C+ + CG+   C+ S
Sbjct: 307 CYSSFRDHVRTHTGEKPCQCKHCGKAFTCYSS 338


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 64,167,132
Number of Sequences: 219361
Number of extensions: 1053238
Number of successful extensions: 3302
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3297
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 5216272880
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top