ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags24o23
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK100460.1| Oryza sativa (japonica cultivar-group) cDNA clon... 375 e-100
2ref|NM_192811.1| Oryza sativa (japonica cultivar-group), predic... 357 3e-95
3gb|AY105958.1| Zea mays PCO114043 mRNA sequence 325 1e-85
4gb|AY109071.1| Zea mays PCO122073 mRNA sequence 281 1e-72
5dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 188 2e-44
6dbj|AP003328.3| Oryza sativa (japonica cultivar-group) genomic D... 188 2e-44
7dbj|AP002897.2| Oryza sativa (japonica cultivar-group) genomic D... 72 2e-09
8ref|NM_196521.1| Oryza sativa (japonica cultivar-group) putative... 52 0.002
9dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 52 0.002
10gb|AC027658.1| Oryza sativa (japonica cultivar-group) BAC nbxb00... 52 0.002
11dbj|AK099316.1| Oryza sativa (japonica cultivar-group) cDNA clon... 52 0.002
12dbj|AK064344.1| Oryza sativa (japonica cultivar-group) cDNA clon... 52 0.002
13gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 52 0.002
14ref|NM_001031451.1| Gallus gallus FYN binding protein (FYB-120/1... 44 0.55
15gb|AC157930.7| Mus musculus chromosome 5, clone RP24-151E22, com... 44 0.55
16emb|AJ720995.1| Gallus gallus mRNA for hypothetical protein, clo... 44 0.55
17gb|AC102477.18| Mus musculus chromosome 5, clone RP24-405C17, co... 44 0.55
18gb|AC159092.11| Mus musculus chromosome 1, clone RP23-103C13, co... 42 2.2
19gb|AC114986.13| Mus musculus chromosome 1, clone RP23-242G7, com... 42 2.2
20ref|XM_544750.2| PREDICTED: Canis familiaris similar to acheron ... 42 2.2
21gb|AC122230.4| Mus musculus BAC clone RP23-133F23 from 9, comple... 42 2.2
22dbj|AP008232.1| Sodalis glossinidius str. 'morsitans' DNA, compl... 42 2.2
23gb|AC139378.4| Mus musculus BAC clone RP23-265F20 from 9, comple... 42 2.2
24gb|AC140465.2| Mus musculus BAC clone RP24-389J3 from chromosome... 40 8.6
25gb|AC114409.17| Mus musculus chromosome 5, clone RP23-148F6, com... 40 8.6
26ref|NM_018357.2| Homo sapiens La ribonucleoprotein domain family... 40 8.6
27gb|AC110564.7| Mus musculus chromosome 12, clone RP23-292A16, co... 40 8.6
28ref|XM_726134.1| Plasmodium yoelii yoelii str. 17XNL origin reco... 40 8.6
29ref|XM_668171.1| Plasmodium berghei strain ANKA hypothetical pro... 40 8.6
30ref|XM_964220.1| PREDICTED: Tribolium castaneum similar to CG400... 40 8.6
31gb|BC014018.2| Homo sapiens La ribonucleoprotein domain family, ... 40 8.6
32emb|AL833876.1|HSM805170 Homo sapiens mRNA; cDNA DKFZp762N186 (f... 40 8.6
33emb|CR592697.1| full-length cDNA clone CS0DF010YN23 of Fetal bra... 40 8.6
34dbj|AK002058.1| Homo sapiens cDNA FLJ11196 fis, clone PLACE10076... 40 8.6
35gb|AC090868.4| Homo sapiens chromosome 15, clone RP11-795G3, com... 40 8.6
36gb|BC009446.1| Homo sapiens La ribonucleoprotein domain family, ... 40 8.6
37gb|BC006082.1| Homo sapiens La ribonucleoprotein domain family, ... 40 8.6
38gb|AC010859.5| Homo sapiens chromosome , clone RP11-3D19, comple... 40 8.6
39gb|AY014830.1| Mus musculus lysyl hydroxylase 3 (Plod3) gene, co... 40 8.6
40gb|AC154505.3| Mus musculus BAC clone RP24-92J14 from chromosome... 40 8.6
41dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.6
42gb|AC009269.6|AC009269 Homo sapiens chromosome 15, clone RP11-13... 40 8.6
43gb|AC117469.3| Homo sapiens 3 BAC RP11-513G11 (Roswell Park Canc... 40 8.6
44gb|AC015912.16| Homo sapiens chromosome 17, clone RP11-670E13, c... 40 8.6
45gb|AC106858.12| Homo sapiens chromosome 17, clone RP11-347L15, c... 40 8.6
46gb|AF443829.1| Homo sapiens acheron mRNA, complete cds 40 8.6
47gb|AF443828.1| Homo sapiens acheron mRNA, complete cds 40 8.6
48dbj|AK130092.1| Homo sapiens cDNA FLJ26582 fis, clone LNF07059 40 8.6
49dbj|AP004333.3| Oryza sativa (japonica cultivar-group) genomic D... 40 8.6
50dbj|AP006278.1| Homo sapiens genomic DNA, chromosome 8q22.1, clo... 40 8.6
51emb|AL590449.1|CNS07EGG chromosome X of strain GB-M1 of Encephal... 40 8.6
52gb|AC147987.5| Mus musculus BAC clone RP24-456B4 from 5, complet... 40 8.6
53gb|AC147986.3| Mus musculus BAC clone RP24-404L1 from 5, complet... 40 8.6
54emb|CT025549.13| Mouse DNA sequence from clone RP24-235K10 on ch... 40 8.6
55emb|AL645911.14| Mouse DNA sequence from clone RP23-25M3 on chro... 40 8.6 
>dbj|AK100460.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023091N11, full
            insert sequence
          Length = 1327

 Score =  375 bits (189), Expect = e-100
 Identities = 392/460 (85%)
 Strand = Plus / Minus

                                                                        
Query: 162  ttttttagtttcacttcttcggcgtatctgcataattccaggtgaatttcgcaaatgaag 221
            |||||||| || ||||||| ||||| || ||||| ||||||||| | |  |||||||| |
Sbjct: 1149 ttttttagctttacttctttggcgtgtcagcatacttccaggtgtaatgtgcaaatgagg 1090

                                                                        
Query: 222  tatattgccttccaccggccacatcttcttcgcgtatctcattgctaatctctttgaggt 281
            |||| || |||||||| || |||||||||||||||| ||   |    |||||||| ||||
Sbjct: 1089 tatactgtcttccaccagcgacatcttcttcgcgtacctggctagagatctctttcaggt 1030

                                                                        
Query: 282  catcttctgtgagcttcacctttaaggagtcaatgttggagtctagattcttgatcttag 341
            |||| || ||||| |||||||||||||||||||||||||  ||||| || || ||||| |
Sbjct: 1029 catcatccgtgaggttcacctttaaggagtcaatgttggcatctaggttttttatcttgg 970

                                                                        
Query: 342  ttgtccctggtatcggaaccacatcatccccttgatgcagaacccaggctaaagctagct 401
            |||| |||||||| || |||||||||||||||||||| |||||||| |||||||||||||
Sbjct: 969  ttgttcctggtattgggaccacatcatccccttgatgaagaacccaagctaaagctagct 910

                                                                        
Query: 402  gagnagggctgcaatggtgcttcttggccagttcttccattttcagataaagttgcttgt 461
            ||| ||||||||| ||||||||||||||||| |||||| ||||||||||||| || || |
Sbjct: 909  gagcagggctgcactggtgcttcttggccagctcttccgttttcagataaagctgtttat 850

                                                                        
Query: 462  tcttctccaggttttcagcagaaaaacgtggatggcctttcagactagattcagcagaca 521
            |||||||||  |||||||||||||| |||||||| |||| || | |||||||||||||||
Sbjct: 849  tcttctccaaattttcagcagaaaatcgtggatgtccttgcaaattagattcagcagaca 790

                                                                        
Query: 522  cttgttgtgtcactccccttccaccgaaaaacccacgggcaatcgggctgtagggaacaa 581
             ||||| ||||||||| || || ||||||||||| ||||| || ||||||||||||||||
Sbjct: 789  attgttctgtcactcctctccctccgaaaaacccgcgggcgatagggctgtagggaacaa 730

                                                    
Query: 582  ttgcaatccctagttctctgcagagaggcacaatctcggg 621
            || |||| || |  || |||||||| |||||||| |||||
Sbjct: 729  ttccaatgcccaactccctgcagagcggcacaatttcggg 690
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>ref|NM_192811.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 888

 Score =  357 bits (180), Expect = 3e-95
 Identities = 356/415 (85%)
 Strand = Plus / Minus

                                                                       
Query: 174 acttcttcggcgtatctgcataattccaggtgaatttcgcaaatgaagtatattgccttc 233
           ||||||| ||||| || ||||| ||||||||| | |  |||||||| ||||| || ||||
Sbjct: 886 acttctttggcgtgtcagcatacttccaggtgtaatgtgcaaatgaggtatactgtcttc 827

                                                                       
Query: 234 caccggccacatcttcttcgcgtatctcattgctaatctctttgaggtcatcttctgtga 293
           |||| || |||||||||||||||| ||   |    |||||||| |||||||| || ||||
Sbjct: 826 caccagcgacatcttcttcgcgtacctggctagagatctctttcaggtcatcatccgtga 767

                                                                       
Query: 294 gcttcacctttaaggagtcaatgttggagtctagattcttgatcttagttgtccctggta 353
           | |||||||||||||||||||||||||  ||||| || || ||||| ||||| |||||||
Sbjct: 766 ggttcacctttaaggagtcaatgttggcatctaggttttttatcttggttgttcctggta 707

                                                                       
Query: 354 tcggaaccacatcatccccttgatgcagaacccaggctaaagctagctgagnagggctgc 413
           | || |||||||||||||||||||| |||||||| |||||||||||||||| ||||||||
Sbjct: 706 ttgggaccacatcatccccttgatgaagaacccaagctaaagctagctgagcagggctgc 647

                                                                       
Query: 414 aatggtgcttcttggccagttcttccattttcagataaagttgcttgttcttctccaggt 473
           | ||||||||||||||||| |||||| ||||||||||||| || || ||||||||||  |
Sbjct: 646 actggtgcttcttggccagctcttccgttttcagataaagctgtttattcttctccaaat 587

                                                                       
Query: 474 tttcagcagaaaaacgtggatggcctttcagactagattcagcagacacttgttgtgtca 533
           ||||||||||||| |||||||| |||| || | ||||||||||||||| ||||| |||||
Sbjct: 586 tttcagcagaaaatcgtggatgtccttgcaaattagattcagcagacaattgttctgtca 527

                                                                  
Query: 534 ctccccttccaccgaaaaacccacgggcaatcgggctgtagggaacaattgcaat 588
           |||| || || ||||||||||| ||||| || |||||||||||||||||| ||||
Sbjct: 526 ctcctctccctccgaaaaacccgcgggcgatagggctgtagggaacaattccaat 472
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>gb|AY105958.1| Zea mays PCO114043 mRNA sequence
          Length = 1434

 Score =  325 bits (164), Expect = 1e-85
 Identities = 380/451 (84%), Gaps = 1/451 (0%)
 Strand = Plus / Minus

                                                                        
Query: 175  cttcttcggcgtatctgcataattccaggtgaatttcgcaaatgaagtatattgccttcc 234
            |||||| |||||||| || || |||||||||   |  |||||||||||  |||| |||||
Sbjct: 1115 cttctttggcgtatcagcgtacttccaggtggtatgtgcaaatgaagtgaattgtcttcc 1056

                                                                        
Query: 235  accggccacatcttcttcgcgtatctcattgctaatctctttgaggtcatcttctgtgag 294
            ||| |||||||||||||| |||||||   |||  || ||||| || || || ||||| ||
Sbjct: 1055 accagccacatcttcttcccgtatctggctgcccatttctttcagatcttcgtctgtcag 996

                                                                        
Query: 295  cttcacctttaaggagtcaatgttggagtctagattcttgatcttag-ttgtccctggta 353
             |||||||| ||||||||||||||||| |||||||||||||| || | ||||||||||||
Sbjct: 995  tttcaccttcaaggagtcaatgttggaatctagattcttgattttgggttgtccctggta 936

                                                                        
Query: 354  tcggaaccacatcatccccttgatgcagaacccaggctaaagctagctgagnagggctgc 413
            | |||||||||||||| ||||||||||||||||| |||||||||||||||| ||||||||
Sbjct: 935  taggaaccacatcatctccttgatgcagaacccatgctaaagctagctgagcagggctgc 876

                                                                        
Query: 414  aatggtgcttcttggccagttcttccattttcagataaagttgcttgttcttctccaggt 473
            | |||||||| ||||||||||||||||||  || ||||| |||||||||||||||||  |
Sbjct: 875  actggtgcttattggccagttcttccattcgcaaataaatttgcttgttcttctccaaat 816

                                                                        
Query: 474  tttcagcagaaaaacgtggatggcctttcagactagattcagcagacacttgttgtgtca 533
            |||| | || ||| | |||    || | |||| ||||||||||||||||||||| | |||
Sbjct: 815  tttctggagcaaaccttgggatcccatgcagattagattcagcagacacttgttctttca 756

                                                                        
Query: 534  ctccccttccaccgaaaaacccacgggcaatcgggctgtagggaacaattgcaatcccta 593
            |||| |||||||| |||||||||||| |||  || ||||| || |||||| |||| || |
Sbjct: 755  ctcctcttccaccaaaaaacccacggccaagaggactgtatggtacaattccaatgccca 696

                                           
Query: 594  gttctctgcagagaggcacaatctcgggctc 624
             |||||||||||| |||||||| ||||||||
Sbjct: 695  attctctgcagagcggcacaatttcgggctc 665
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>gb|AY109071.1| Zea mays PCO122073 mRNA sequence
          Length = 1331

 Score =  281 bits (142), Expect = 1e-72
 Identities = 339/405 (83%)
 Strand = Plus / Minus

                                                                        
Query: 224  tattgccttccaccggccacatcttcttcgcgtatctcattgctaatctctttgaggtca 283
            ||||| |||||||| |||||||||||| | |||||||   ||| ||| || || ||||| 
Sbjct: 1123 tattgtcttccaccagccacatcttctgcacgtatctggctgccaatttccttcaggtcc 1064

                                                                        
Query: 284  tcttctgtgagcttcacctttaaggagtcaatgttggagtctagattcttgatcttagtt 343
            ||  |||||||||||||||| |||||||||| |||||  ||||| |||||  | || |||
Sbjct: 1063 tcagctgtgagcttcaccttcaaggagtcaacgttggcatctaggttcttcgtttttgtt 1004

                                                                        
Query: 344  gtccctggtatcggaaccacatcatccccttgatgcagaacccaggctaaagctagctga 403
            ||||||||||| ||||||||||||||||||||| ||||||||||||||| ||||||||||
Sbjct: 1003 gtccctggtataggaaccacatcatccccttgacgcagaacccaggctagagctagctga 944

                                                                        
Query: 404  gnagggctgcaatggtgcttcttggccagttcttccattttcagataaagttgcttgttc 463
            |  |||||||| |||| |||||| ||||  ||||| |||||||| ||||  |||||||||
Sbjct: 943  gctgggctgcactggtacttcttcgccaaatcttctattttcaggtaaatctgcttgttc 884

                                                                        
Query: 464  ttctccaggttttcagcagaaaaacgtggatggcctttcagactagattcagcagacact 523
            ||||||| | |||| |  | ||| | |||||| | || |||||||||||||| ||| |||
Sbjct: 883  ttctccaagctttctgttgtaaatcttggatgcctttgcagactagattcagaagaaact 824

                                                                        
Query: 524  tgttgtgtcactccccttccaccgaaaaacccacgggcaatcgggctgtagggaacaatt 583
            || ||| ||||||| |||||||| ||||| |||||| |||| || ||||| |  ||||||
Sbjct: 823  tgctgtatcactcctcttccaccaaaaaatccacggccaattggactgtaagccacaatt 764

                                                         
Query: 584  gcaatccctagttctctgcagagaggcacaatctcgggctcgatg 628
             ||||||| | |||||||||||| ||||| |||||||||||||||
Sbjct: 763  ccaatccccaattctctgcagagtggcacgatctcgggctcgatg 719
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  188 bits (95), Expect = 2e-44
 Identities = 139/154 (90%)
 Strand = Plus / Plus

                                                                            
Query: 347      cctggtatcggaaccacatcatccccttgatgcagaacccaggctaaagctagctgagna 406
                |||||||| || |||||||||||||||||||| |||||||| |||||||||||||||| |
Sbjct: 24576720 cctggtattgggaccacatcatccccttgatgaagaacccaagctaaagctagctgagca 24576779

                                                                            
Query: 407      gggctgcaatggtgcttcttggccagttcttccattttcagataaagttgcttgttcttc 466
                |||||||| ||||||||||||||||| |||||| ||||||||||||| || || ||||||
Sbjct: 24576780 gggctgcactggtgcttcttggccagctcttccgttttcagataaagctgtttattcttc 24576839

                                                  
Query: 467      tccaggttttcagcagaaaaacgtggatggcctt 500
                ||||  |||||||||||||| |||||||| ||||
Sbjct: 24576840 tccaaattttcagcagaaaatcgtggatgtcctt 24576873



 Score =  105 bits (53), Expect = 2e-19
 Identities = 155/189 (82%)
 Strand = Plus / Plus

                                                                            
Query: 162      ttttttagtttcacttcttcggcgtatctgcataattccaggtgaatttcgcaaatgaag 221
                |||||||| || ||||||| ||||| || ||||| ||||||||| | |  |||||||| |
Sbjct: 24575936 ttttttagctttacttctttggcgtgtcagcatacttccaggtgtaatgtgcaaatgagg 24575995

                                                                            
Query: 222      tatattgccttccaccggccacatcttcttcgcgtatctcattgctaatctctttgaggt 281
                |||| || |||||||| || |||||||||||||||| ||   |    |||||||| ||||
Sbjct: 24575996 tatactgtcttccaccagcgacatcttcttcgcgtacctggctagagatctctttcaggt 24576055

                                                                            
Query: 282      catcttctgtgagcttcacctttaaggagtcaatgttggagtctagattcttgatcttag 341
                |||| || ||||| |||||||||||||||||||||||||  ||||| || || ||||| |
Sbjct: 24576056 catcatccgtgaggttcacctttaaggagtcaatgttggcatctaggttttttatcttgg 24576115

                         
Query: 342      ttgtccctg 350
                |||| ||||
Sbjct: 24576116 ttgttcctg 24576124



 Score = 91.7 bits (46), Expect = 3e-15
 Identities = 73/82 (89%)
 Strand = Plus / Plus

                                                                            
Query: 507      tagattcagcagacacttgttgtgtcactccccttccaccgaaaaacccacgggcaatcg 566
                ||||||||||||||| ||||| ||||||||| || || ||||||||||| ||||| || |
Sbjct: 24576969 tagattcagcagacaattgttctgtcactcctctccctccgaaaaacccgcgggcgatag 24577028

                                      
Query: 567      ggctgtagggaacaattgcaat 588
                ||||||||||||||||| ||||
Sbjct: 24577029 ggctgtagggaacaattccaat 24577050
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>dbj|AP003328.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
            clone:B1040D09
          Length = 148102

 Score =  188 bits (95), Expect = 2e-44
 Identities = 139/154 (90%)
 Strand = Plus / Plus

                                                                        
Query: 347  cctggtatcggaaccacatcatccccttgatgcagaacccaggctaaagctagctgagna 406
            |||||||| || |||||||||||||||||||| |||||||| |||||||||||||||| |
Sbjct: 2683 cctggtattgggaccacatcatccccttgatgaagaacccaagctaaagctagctgagca 2742

                                                                        
Query: 407  gggctgcaatggtgcttcttggccagttcttccattttcagataaagttgcttgttcttc 466
            |||||||| ||||||||||||||||| |||||| ||||||||||||| || || ||||||
Sbjct: 2743 gggctgcactggtgcttcttggccagctcttccgttttcagataaagctgtttattcttc 2802

                                              
Query: 467  tccaggttttcagcagaaaaacgtggatggcctt 500
            ||||  |||||||||||||| |||||||| ||||
Sbjct: 2803 tccaaattttcagcagaaaatcgtggatgtcctt 2836



 Score =  105 bits (53), Expect = 2e-19
 Identities = 155/189 (82%)
 Strand = Plus / Plus

                                                                        
Query: 162  ttttttagtttcacttcttcggcgtatctgcataattccaggtgaatttcgcaaatgaag 221
            |||||||| || ||||||| ||||| || ||||| ||||||||| | |  |||||||| |
Sbjct: 1899 ttttttagctttacttctttggcgtgtcagcatacttccaggtgtaatgtgcaaatgagg 1958

                                                                        
Query: 222  tatattgccttccaccggccacatcttcttcgcgtatctcattgctaatctctttgaggt 281
            |||| || |||||||| || |||||||||||||||| ||   |    |||||||| ||||
Sbjct: 1959 tatactgtcttccaccagcgacatcttcttcgcgtacctggctagagatctctttcaggt 2018

                                                                        
Query: 282  catcttctgtgagcttcacctttaaggagtcaatgttggagtctagattcttgatcttag 341
            |||| || ||||| |||||||||||||||||||||||||  ||||| || || ||||| |
Sbjct: 2019 catcatccgtgaggttcacctttaaggagtcaatgttggcatctaggttttttatcttgg 2078

                     
Query: 342  ttgtccctg 350
            |||| ||||
Sbjct: 2079 ttgttcctg 2087



 Score = 91.7 bits (46), Expect = 3e-15
 Identities = 73/82 (89%)
 Strand = Plus / Plus

                                                                        
Query: 507  tagattcagcagacacttgttgtgtcactccccttccaccgaaaaacccacgggcaatcg 566
            ||||||||||||||| ||||| ||||||||| || || ||||||||||| ||||| || |
Sbjct: 2932 tagattcagcagacaattgttctgtcactcctctccctccgaaaaacccgcgggcgatag 2991

                                  
Query: 567  ggctgtagggaacaattgcaat 588
            ||||||||||||||||| ||||
Sbjct: 2992 ggctgtagggaacaattccaat 3013
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>dbj|AP002897.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0686E09
          Length = 156425

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 81/96 (84%)
 Strand = Plus / Plus

                                                                          
Query: 162    ttttttagtttcacttcttcggcgtatctgcataattccaggtgaatttcgcaaatgaag 221
              |||||||| || ||||||| ||||| || ||||| ||||||||| | |  |||||||| |
Sbjct: 156320 ttttttagctttacttctttggcgtgtcagcatacttccaggtgtaatgtgcaaatgagg 156379

                                                  
Query: 222    tatattgccttccaccggccacatcttcttcgcgta 257
              |||| || |||||||| || ||||||||||||||||
Sbjct: 156380 tatactgtcttccaccagcgacatcttcttcgcgta 156415
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>ref|NM_196521.1| Oryza sativa (japonica cultivar-group) putative polyprotein
           (OSJNBa0006I13.8), mRNA
          Length = 1305

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 32/34 (94%)
 Strand = Plus / Minus

                                             
Query: 356 ggaaccacatcatccccttgatgcagaacccagg 389
           ||||| ||||||||||||||||| ||||||||||
Sbjct: 839 ggaacaacatcatccccttgatgaagaacccagg 806
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 32/34 (94%)
 Strand = Plus / Minus

                                                  
Query: 356      ggaaccacatcatccccttgatgcagaacccagg 389
                ||||| ||||||||||||||||| ||||||||||
Sbjct: 14220328 ggaacaacatcatccccttgatgaagaacccagg 14220295
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>gb|AC027658.1| Oryza sativa (japonica cultivar-group) BAC nbxb0006I13 chromosome 10,
             complete sequence
          Length = 142737

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 32/34 (94%)
 Strand = Plus / Minus

                                               
Query: 356   ggaaccacatcatccccttgatgcagaacccagg 389
             ||||| ||||||||||||||||| ||||||||||
Sbjct: 92401 ggaacaacatcatccccttgatgaagaacccagg 92368
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>dbj|AK099316.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023145C18, full
           insert sequence
          Length = 1334

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 32/34 (94%)
 Strand = Plus / Minus

                                             
Query: 356 ggaaccacatcatccccttgatgcagaacccagg 389
           ||||| ||||||||||||||||| ||||||||||
Sbjct: 920 ggaacaacatcatccccttgatgaagaacccagg 887
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>dbj|AK064344.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-107-H09, full
           insert sequence
          Length = 1355

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 32/34 (94%)
 Strand = Plus / Minus

                                             
Query: 356 ggaaccacatcatccccttgatgcagaacccagg 389
           ||||| ||||||||||||||||| ||||||||||
Sbjct: 935 ggaacaacatcatccccttgatgaagaacccagg 902
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 32/34 (94%)
 Strand = Plus / Minus

                                                  
Query: 356      ggaaccacatcatccccttgatgcagaacccagg 389
                ||||| ||||||||||||||||| ||||||||||
Sbjct: 14228570 ggaacaacatcatccccttgatgaagaacccagg 14228537
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>ref|NM_001031451.1| Gallus gallus FYN binding protein (FYB-120/130) (FYB), mRNA
          Length = 3618

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 144  atcactgtctccacaatctttt 165
            ||||||||||||||||||||||
Sbjct: 2310 atcactgtctccacaatctttt 2289
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>gb|AC157930.7| Mus musculus chromosome 5, clone RP24-151E22, complete sequence
          Length = 146346

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                            
Query: 286    ttctgtgagcttcacctttaaggagtcaat 315
              |||||||| ||| |||||||||||||||||
Sbjct: 114836 ttctgtgaccttgacctttaaggagtcaat 114865
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>emb|AJ720995.1| Gallus gallus mRNA for hypothetical protein, clone 32b13
          Length = 3618

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 144  atcactgtctccacaatctttt 165
            ||||||||||||||||||||||
Sbjct: 2310 atcactgtctccacaatctttt 2289
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>gb|AC102477.18| Mus musculus chromosome 5, clone RP24-405C17, complete sequence
          Length = 179495

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                          
Query: 286  ttctgtgagcttcacctttaaggagtcaat 315
            |||||||| ||| |||||||||||||||||
Sbjct: 5189 ttctgtgaccttgacctttaaggagtcaat 5160
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>gb|AC159092.11| Mus musculus chromosome 1, clone RP23-103C13, complete sequence
          Length = 196891

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 440    attttcagataaagttgcttgttct 464
              |||||||||||| ||||||||||||
Sbjct: 153846 attttcagataatgttgcttgttct 153870
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>gb|AC114986.13| Mus musculus chromosome 1, clone RP23-242G7, complete sequence
          Length = 195146

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 440    attttcagataaagttgcttgttct 464
              |||||||||||| ||||||||||||
Sbjct: 192475 attttcagataatgttgcttgttct 192499
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>ref|XM_544750.2| PREDICTED: Canis familiaris similar to acheron isoform 1
           (LOC487625), mRNA
          Length = 2254

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 463 cttctccaggttttcagcagaaaaa 487
           |||||||||||||||| ||||||||
Sbjct: 633 cttctccaggttttcatcagaaaaa 609
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>gb|AC122230.4| Mus musculus BAC clone RP23-133F23 from 9, complete sequence
          Length = 183554

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 230    cttccaccggccacatcttct 250
              |||||||||||||||||||||
Sbjct: 138871 cttccaccggccacatcttct 138851
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>dbj|AP008232.1| Sodalis glossinidius str. 'morsitans' DNA, complete genome
          Length = 4171146

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 477     cagcagaaaaacgtggatggc 497
               |||||||||||||||||||||
Sbjct: 3013634 cagcagaaaaacgtggatggc 3013614
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>gb|AC139378.4| Mus musculus BAC clone RP23-265F20 from 9, complete sequence
          Length = 256632

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 230    cttccaccggccacatcttct 250
              |||||||||||||||||||||
Sbjct: 151824 cttccaccggccacatcttct 151844
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>gb|AC140465.2| Mus musculus BAC clone RP24-389J3 from chromosome 16, complete sequence
          Length = 189550

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 155   cacaatcttttttagtttca 174
             ||||||||||||||||||||
Sbjct: 33342 cacaatcttttttagtttca 33361
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>gb|AC114409.17| Mus musculus chromosome 5, clone RP23-148F6, complete sequence
          Length = 222692

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 529   tgtcactccccttccaccgaaaaa 552
             ||||||||||||||||| ||||||
Sbjct: 61497 tgtcactccccttccacagaaaaa 61474
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>ref|NM_018357.2| Homo sapiens La ribonucleoprotein domain family, member 6 (LARP6),
           transcript variant 1, mRNA
          Length = 2065

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 463 cttctccaggttttcagcagaaaa 486
           |||||||||||||||| |||||||
Sbjct: 404 cttctccaggttttcatcagaaaa 381
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>gb|AC110564.7| Mus musculus chromosome 12, clone RP23-292A16, complete sequence
          Length = 211576

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 519    acacttgttgtgtcactccc 538
              ||||||||||||||||||||
Sbjct: 102479 acacttgttgtgtcactccc 102498
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>ref|XM_726134.1| Plasmodium yoelii yoelii str. 17XNL origin recognition complex
           subunit 2 (PY03235) partial mRNA
          Length = 1374

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 67  gacaattcacaagatgaaga 86
           ||||||||||||||||||||
Sbjct: 106 gacaattcacaagatgaaga 125
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>ref|XM_668171.1| Plasmodium berghei strain ANKA hypothetical protein (PB000518.03.0)
            partial mRNA
          Length = 1167

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 67   gacaattcacaagatgaaga 86
            ||||||||||||||||||||
Sbjct: 1078 gacaattcacaagatgaaga 1097
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>ref|XM_964220.1| PREDICTED: Tribolium castaneum similar to CG40084-PC.3 (LOC657784),
           mRNA
          Length = 2787

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 361 cacatcatccccttgatgca 380
           ||||||||||||||||||||
Sbjct: 858 cacatcatccccttgatgca 839
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>gb|BC014018.2| Homo sapiens La ribonucleoprotein domain family, member 6,
           transcript variant 1, mRNA (cDNA clone MGC:20301
           IMAGE:4127153), complete cds
          Length = 2022

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 463 cttctccaggttttcagcagaaaa 486
           |||||||||||||||| |||||||
Sbjct: 361 cttctccaggttttcatcagaaaa 338
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>emb|AL833876.1|HSM805170 Homo sapiens mRNA; cDNA DKFZp762N186 (from clone DKFZp762N186)
          Length = 2024

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 463 cttctccaggttttcagcagaaaa 486
           |||||||||||||||| |||||||
Sbjct: 364 cttctccaggttttcatcagaaaa 341
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>emb|CR592697.1| full-length cDNA clone CS0DF010YN23 of Fetal brain of Homo sapiens
           (human)
          Length = 2004

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 463 cttctccaggttttcagcagaaaa 486
           |||||||||||||||| |||||||
Sbjct: 393 cttctccaggttttcatcagaaaa 370
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>dbj|AK002058.1| Homo sapiens cDNA FLJ11196 fis, clone PLACE1007688, weakly similar
           to LA PROTEIN HOMOLOG
          Length = 2061

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 463 cttctccaggttttcagcagaaaa 486
           |||||||||||||||| |||||||
Sbjct: 404 cttctccaggttttcatcagaaaa 381
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>gb|AC090868.4| Homo sapiens chromosome 15, clone RP11-795G3, complete sequence
          Length = 183890

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 463   cttctccaggttttcagcagaaaa 486
             |||||||||||||||| |||||||
Sbjct: 69564 cttctccaggttttcatcagaaaa 69541
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>gb|BC009446.1| Homo sapiens La ribonucleoprotein domain family, member 6,
           transcript variant 1, mRNA (cDNA clone MGC:15884
           IMAGE:3529516), complete cds
          Length = 2018

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 463 cttctccaggttttcagcagaaaa 486
           |||||||||||||||| |||||||
Sbjct: 357 cttctccaggttttcatcagaaaa 334
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>gb|BC006082.1| Homo sapiens La ribonucleoprotein domain family, member 6,
           transcript variant 1, mRNA (cDNA clone MGC:12583
           IMAGE:2961587), complete cds
          Length = 2018

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 463 cttctccaggttttcagcagaaaa 486
           |||||||||||||||| |||||||
Sbjct: 357 cttctccaggttttcatcagaaaa 334
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>gb|AC010859.5| Homo sapiens chromosome , clone RP11-3D19, complete sequence
          Length = 171301

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 75     acaagatgaagatacaggga 94
              ||||||||||||||||||||
Sbjct: 123845 acaagatgaagatacaggga 123864
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>gb|AY014830.1| Mus musculus lysyl hydroxylase 3 (Plod3) gene, complete cds
          Length = 15549

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 284   tcttctgtgagcttcacctt 303
             ||||||||||||||||||||
Sbjct: 11337 tcttctgtgagcttcacctt 11356
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>gb|AC154505.3| Mus musculus BAC clone RP24-92J14 from chromosome 13, complete
            sequence
          Length = 199707

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 285  cttctgtgagcttcacctttaagg 308
            |||||||||||||||| |||||||
Sbjct: 6929 cttctgtgagcttcacttttaagg 6952
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 533      actccccttccaccgaaaaaccca 556
                ||||||| ||||||||||||||||
Sbjct: 29425059 actccccctccaccgaaaaaccca 29425036
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>gb|AC009269.6|AC009269 Homo sapiens chromosome 15, clone RP11-138H8, complete sequence
          Length = 172850

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 463   cttctccaggttttcagcagaaaa 486
             |||||||||||||||| |||||||
Sbjct: 13177 cttctccaggttttcatcagaaaa 13154
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>gb|AC117469.3| Homo sapiens 3 BAC RP11-513G11 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 144820

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 78    agatgaagatacagggagca 97
             ||||||||||||||||||||
Sbjct: 64196 agatgaagatacagggagca 64177
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>gb|AC015912.16| Homo sapiens chromosome 17, clone RP11-670E13, complete sequence
          Length = 118172

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 333  tgatcttagttgtccctggt 352
            ||||||||||||||||||||
Sbjct: 7153 tgatcttagttgtccctggt 7134
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>gb|AC106858.12| Homo sapiens chromosome 17, clone RP11-347L15, complete sequence
          Length = 160484

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 333   tgatcttagttgtccctggt 352
             ||||||||||||||||||||
Sbjct: 19005 tgatcttagttgtccctggt 19024
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>gb|AF443829.1| Homo sapiens acheron mRNA, complete cds
          Length = 2057

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 463 cttctccaggttttcagcagaaaa 486
           |||||||||||||||| |||||||
Sbjct: 403 cttctccaggttttcatcagaaaa 380
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>gb|AF443828.1| Homo sapiens acheron mRNA, complete cds
          Length = 2057

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 463 cttctccaggttttcagcagaaaa 486
           |||||||||||||||| |||||||
Sbjct: 403 cttctccaggttttcatcagaaaa 380
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>dbj|AK130092.1| Homo sapiens cDNA FLJ26582 fis, clone LNF07059
          Length = 1537

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 463 cttctccaggttttcagcagaaaa 486
           |||||||||||||||| |||||||
Sbjct: 304 cttctccaggttttcatcagaaaa 281
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>dbj|AP004333.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0034A04
          Length = 151263

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 533   actccccttccaccgaaaaaccca 556
             ||||||| ||||||||||||||||
Sbjct: 87981 actccccctccaccgaaaaaccca 87958
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>dbj|AP006278.1| Homo sapiens genomic DNA, chromosome 8q22.1, clone: KB1573B4, complete
             sequence
          Length = 157927

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 75    acaagatgaagatacaggga 94
             ||||||||||||||||||||
Sbjct: 80102 acaagatgaagatacaggga 80121
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>emb|AL590449.1|CNS07EGG chromosome X of strain GB-M1 of Encephalitozoon cuniculi (Microspora)
          Length = 262797

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 421    cttcttggccagttcttcca 440
              ||||||||||||||||||||
Sbjct: 104212 cttcttggccagttcttcca 104193
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>gb|AC147987.5| Mus musculus BAC clone RP24-456B4 from 5, complete sequence
          Length = 195371

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 284    tcttctgtgagcttcacctt 303
              ||||||||||||||||||||
Sbjct: 183078 tcttctgtgagcttcacctt 183097
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>gb|AC147986.3| Mus musculus BAC clone RP24-404L1 from 5, complete sequence
          Length = 177652

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 284    tcttctgtgagcttcacctt 303
              ||||||||||||||||||||
Sbjct: 149502 tcttctgtgagcttcacctt 149483
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>emb|CT025549.13| Mouse DNA sequence from clone RP24-235K10 on chromosome 13, complete
              sequence
          Length = 162143

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 285    cttctgtgagcttcacctttaagg 308
              |||||||||||||||| |||||||
Sbjct: 113971 cttctgtgagcttcacttttaagg 113994
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>emb|AL645911.14| Mouse DNA sequence from clone RP23-25M3 on chromosome 11, complete
             sequence
          Length = 244653

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 424   cttggccagttcttccattt 443
             ||||||||||||||||||||
Sbjct: 11820 cttggccagttcttccattt 11801


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,709,127
Number of Sequences: 3902068
Number of extensions: 5709127
Number of successful extensions: 125007
Number of sequences better than 10.0: 55
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 124764
Number of HSP's gapped (non-prelim): 239
length of query: 628
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 605
effective length of database: 17,143,297,704
effective search space: 10371695110920
effective search space used: 10371695110920
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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