ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags24o21
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_478377.1| Oryza sativa (japonica cultivar-group), mRNA 216 3e-53
2dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 216 3e-53
3dbj|AP005196.4| Oryza sativa (japonica cultivar-group) genomic D... 216 3e-53
4dbj|AP005176.3| Oryza sativa (japonica cultivar-group) genomic D... 216 3e-53
5dbj|AK105071.1| Oryza sativa (japonica cultivar-group) cDNA clon... 216 3e-53
6dbj|AK072104.1| Oryza sativa (japonica cultivar-group) cDNA clon... 216 3e-53
7dbj|AK064835.1| Oryza sativa (japonica cultivar-group) cDNA clon... 216 3e-53
8gb|AY108268.1| Zea mays PCO078526 mRNA sequence 174 1e-40
9gb|AC087888.12| Homo sapiens 12 BAC RP11-228G3 (Roswell Park Can... 48 0.018
10emb|BX001038.6| Zebrafish DNA sequence from clone CH211-12M10 in... 44 0.28
11gb|AC136222.2| Oryza sativa (japonica cultivar-group) chromosome... 42 1.1
12gb|AC129330.4| Mus musculus BAC clone RP23-61B8 from chromosome ... 42 1.1
13gb|AC125536.3| Mus musculus BAC clone RP24-142N21 from chromosom... 42 1.1
14gb|AC146561.22| Medicago truncatula clone mth2-12j18, complete s... 42 1.1
15emb|AL158817.11| Human DNA sequence from clone RP3-429O6 on chro... 42 1.1
16gb|AY267622.1| Bigelowiella natans ATP synthase gamma subunit mR... 42 1.1
17gb|AC068298.16| Homo sapiens 3 BAC RP11-496B10 (Roswell Park Can... 42 1.1
18gb|AC118139.3| Homo sapiens BAC clone RP11-461K12 from 4, comple... 42 1.1
19gb|AC107365.2| Danio rerio, clone -241I7, complete sequence 42 1.1
20dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.1
21gb|AF088219.1|AF088219 Homo sapiens CC chemokine gene cluster, c... 42 1.1
22emb|CR382300.12| Zebrafish DNA sequence from clone DKEY-25E11 in... 42 1.1
23emb|CT573215.2| Medicago truncatula chromosome 5 clone mth2-51h2... 42 1.1
24gb|AC006572.2|AC006572 Homo sapiens, clone hRPK.60_A_1, complete... 42 1.1
25gb|AC004675.1|AC004675 Homo sapiens chromosome 17, clone hCIT.18... 42 1.1
26gb|CP000112.1| Desulfovibrio desulfuricans G20, complete genome 40 4.4
27emb|Z81119.1|CET10H4 Caenorhabditis elegans Cosmid T10H4, comple... 40 4.4
28gb|AC126686.3| Mus musculus BAC clone RP23-148C24 from 18, compl... 40 4.4
29gb|AC118351.14| Rattus norvegicus 1 BAC CH230-362O18 (Children's... 40 4.4
30emb|AL365214.16| Human DNA sequence from clone RP11-506B6 on chr... 40 4.4
31gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, compl... 40 4.4
32gb|AC006454.4| Homo sapiens PAC clone RP5-852P6 from 7, complete... 40 4.4
33gb|AC011193.3| Homo sapiens chromosome 17, clone RP11-521P1, com... 40 4.4
34gb|AC073761.4| Mus musculus chromosome 17 clone RP23-33K21, comp... 40 4.4
35gb|AC092745.7| Homo sapiens 12 BAC RP11-90D4 (Roswell Park Cance... 40 4.4
36gb|AC092111.9| Homo sapiens 12 BAC RP11-266K4 (Roswell Park Canc... 40 4.4
37dbj|AB232920.1| Oryzias latipes hox gene cluster, complete cds, ... 40 4.4
38gb|AC175781.3| Cavia porcellus clone CH234-402D11, complete sequ... 40 4.4
39gb|AC122754.13| Mus musculus chromosome 1, clone RP24-510K10, co... 40 4.4
40gb|AC012336.9|AC012336 Homo sapiens chromosome 17, clone CTD-223... 40 4.4
41dbj|AK043901.1| Mus musculus 10 days neonate cortex cDNA, RIKEN ... 40 4.4
42dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.4
43gb|AC105916.4| Homo sapiens BAC clone RP11-180A12 from 4, comple... 40 4.4
44emb|AL929073.19| Mouse DNA sequence from clone RP23-125D6 on chr... 40 4.4
45dbj|AP005611.3| Oryza sativa (japonica cultivar-group) genomic D... 40 4.4
46gb|AC154142.24| Mus musculus chromosome 1, clone RP23-187M7, com... 40 4.4
47emb|AL845291.5| Mouse DNA sequence from clone RP23-1O11 on chrom... 40 4.4
48dbj|AB032374.1| Mus musculus gene for Tbr1, 5' flanking region 40 4.4
49dbj|AB015309.1| Acidovorax sp. TP4 gene for PHB depolymerase, co... 40 4.4 
>ref|XM_478377.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1469

 Score =  216 bits (109), Expect = 3e-53
 Identities = 151/165 (91%)
 Strand = Plus / Minus

                                                                        
Query: 166  agggcgtcggcgccagcgacgatctcaaggatctctccggtgatcttggcctggcgtcgg 225
            |||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||  ||
Sbjct: 1119 agggcgtcggcgccggcgacgatctcgaggatctcgccggtgatcttggcctggcgctgg 1060

                                                                        
Query: 226  cgattgtagaccatggagagattttttcggagatcgatggcattgtctgtggcgctgctc 285
            || ||||||||||||||||| || || ||||| |||||||| ||||| ||||||||||||
Sbjct: 1059 cggttgtagaccatggagaggttcttccggagctcgatggcgttgtcggtggcgctgctc 1000

                                                         
Query: 286  atggcgctcatcctggctgcgagctcgctagcgagcgactcctgg 330
            ||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct: 999  atggcgctcatcctggcggcgagctcgctggcgagcgactcctgg 955
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score =  216 bits (109), Expect = 3e-53
 Identities = 151/165 (91%)
 Strand = Plus / Plus

                                                                            
Query: 166      agggcgtcggcgccagcgacgatctcaaggatctctccggtgatcttggcctggcgtcgg 225
                |||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||  ||
Sbjct: 19602762 agggcgtcggcgccggcgacgatctcgaggatctcgccggtgatcttggcctggcgctgg 19602821

                                                                            
Query: 226      cgattgtagaccatggagagattttttcggagatcgatggcattgtctgtggcgctgctc 285
                || ||||||||||||||||| || || ||||| |||||||| ||||| ||||||||||||
Sbjct: 19602822 cggttgtagaccatggagaggttcttccggagctcgatggcgttgtcggtggcgctgctc 19602881

                                                             
Query: 286      atggcgctcatcctggctgcgagctcgctagcgagcgactcctgg 330
                ||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct: 19602882 atggcgctcatcctggcggcgagctcgctggcgagcgactcctgg 19602926
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>dbj|AP005196.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
              clone:P0580A11
          Length = 174673

 Score =  216 bits (109), Expect = 3e-53
 Identities = 151/165 (91%)
 Strand = Plus / Plus

                                                                          
Query: 166    agggcgtcggcgccagcgacgatctcaaggatctctccggtgatcttggcctggcgtcgg 225
              |||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||  ||
Sbjct: 146106 agggcgtcggcgccggcgacgatctcgaggatctcgccggtgatcttggcctggcgctgg 146165

                                                                          
Query: 226    cgattgtagaccatggagagattttttcggagatcgatggcattgtctgtggcgctgctc 285
              || ||||||||||||||||| || || ||||| |||||||| ||||| ||||||||||||
Sbjct: 146166 cggttgtagaccatggagaggttcttccggagctcgatggcgttgtcggtggcgctgctc 146225

                                                           
Query: 286    atggcgctcatcctggctgcgagctcgctagcgagcgactcctgg 330
              ||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct: 146226 atggcgctcatcctggcggcgagctcgctggcgagcgactcctgg 146270
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>dbj|AP005176.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OSJNBb0041J06
          Length = 138157

 Score =  216 bits (109), Expect = 3e-53
 Identities = 151/165 (91%)
 Strand = Plus / Plus

                                                                         
Query: 166   agggcgtcggcgccagcgacgatctcaaggatctctccggtgatcttggcctggcgtcgg 225
             |||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||  ||
Sbjct: 41412 agggcgtcggcgccggcgacgatctcgaggatctcgccggtgatcttggcctggcgctgg 41471

                                                                         
Query: 226   cgattgtagaccatggagagattttttcggagatcgatggcattgtctgtggcgctgctc 285
             || ||||||||||||||||| || || ||||| |||||||| ||||| ||||||||||||
Sbjct: 41472 cggttgtagaccatggagaggttcttccggagctcgatggcgttgtcggtggcgctgctc 41531

                                                          
Query: 286   atggcgctcatcctggctgcgagctcgctagcgagcgactcctgg 330
             ||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct: 41532 atggcgctcatcctggcggcgagctcgctggcgagcgactcctgg 41576
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>dbj|AK105071.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-045-C11, full
            insert sequence
          Length = 2822

 Score =  216 bits (109), Expect = 3e-53
 Identities = 151/165 (91%)
 Strand = Plus / Minus

                                                                        
Query: 166  agggcgtcggcgccagcgacgatctcaaggatctctccggtgatcttggcctggcgtcgg 225
            |||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||  ||
Sbjct: 2584 agggcgtcggcgccggcgacgatctcgaggatctcgccggtgatcttggcctggcgctgg 2525

                                                                        
Query: 226  cgattgtagaccatggagagattttttcggagatcgatggcattgtctgtggcgctgctc 285
            || ||||||||||||||||| || || ||||| |||||||| ||||| ||||||||||||
Sbjct: 2524 cggttgtagaccatggagaggttcttccggagctcgatggcgttgtcggtggcgctgctc 2465

                                                         
Query: 286  atggcgctcatcctggctgcgagctcgctagcgagcgactcctgg 330
            ||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct: 2464 atggcgctcatcctggcggcgagctcgctggcgagcgactcctgg 2420
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>dbj|AK072104.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013116B21, full
            insert sequence
          Length = 1470

 Score =  216 bits (109), Expect = 3e-53
 Identities = 151/165 (91%)
 Strand = Plus / Minus

                                                                        
Query: 166  agggcgtcggcgccagcgacgatctcaaggatctctccggtgatcttggcctggcgtcgg 225
            |||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||  ||
Sbjct: 1119 agggcgtcggcgccggcgacgatctcgaggatctcgccggtgatcttggcctggcgctgg 1060

                                                                        
Query: 226  cgattgtagaccatggagagattttttcggagatcgatggcattgtctgtggcgctgctc 285
            || ||||||||||||||||| || || ||||| |||||||| ||||| ||||||||||||
Sbjct: 1059 cggttgtagaccatggagaggttcttccggagctcgatggcgttgtcggtggcgctgctc 1000

                                                         
Query: 286  atggcgctcatcctggctgcgagctcgctagcgagcgactcctgg 330
            ||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct: 999  atggcgctcatcctggcggcgagctcgctggcgagcgactcctgg 955
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>dbj|AK064835.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000F20, full
            insert sequence
          Length = 1482

 Score =  216 bits (109), Expect = 3e-53
 Identities = 151/165 (91%)
 Strand = Plus / Minus

                                                                        
Query: 166  agggcgtcggcgccagcgacgatctcaaggatctctccggtgatcttggcctggcgtcgg 225
            |||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||  ||
Sbjct: 1224 agggcgtcggcgccggcgacgatctcgaggatctcgccggtgatcttggcctggcgctgg 1165

                                                                        
Query: 226  cgattgtagaccatggagagattttttcggagatcgatggcattgtctgtggcgctgctc 285
            || ||||||||||||||||| || || ||||| |||||||| ||||| ||||||||||||
Sbjct: 1164 cggttgtagaccatggagaggttcttccggagctcgatggcgttgtcggtggcgctgctc 1105

                                                         
Query: 286  atggcgctcatcctggctgcgagctcgctagcgagcgactcctgg 330
            ||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct: 1104 atggcgctcatcctggcggcgagctcgctggcgagcgactcctgg 1060
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>gb|AY108268.1| Zea mays PCO078526 mRNA sequence
          Length = 1437

 Score =  174 bits (88), Expect = 1e-40
 Identities = 145/164 (88%)
 Strand = Plus / Minus

                                                                        
Query: 166  agggcgtcggcgccagcgacgatctcaaggatctctccggtgatcttggcctggcgtcgg 225
            ||||||||||| || ||||||||||| |||||||| ||||||||||||||||||||  | 
Sbjct: 1168 agggcgtcggcaccggcgacgatctcgaggatctccccggtgatcttggcctggcgctgt 1109

                                                                        
Query: 226  cgattgtagaccatggagagattttttcggagatcgatggcattgtctgtggcgctgctc 285
            || |||||| | |||||||| || || ||||| |||||||| ||||| ||||||||||||
Sbjct: 1108 cggttgtaggcgatggagaggttcttgcggagctcgatggcgttgtcggtggcgctgctc 1049

                                                        
Query: 286  atggcgctcatcctggctgcgagctcgctagcgagcgactcctg 329
            ||||||||||||| ||| ||||||||||| ||||||||||||||
Sbjct: 1048 atggcgctcatccgggcggcgagctcgctggcgagcgactcctg 1005
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>gb|AC087888.12| Homo sapiens 12 BAC RP11-228G3 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 87788

 Score = 48.1 bits (24), Expect = 0.018
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                     
Query: 106   aaggaggcaaagagttatatataa 129
             ||||||||||||||||||||||||
Sbjct: 75558 aaggaggcaaagagttatatataa 75535
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>emb|BX001038.6| Zebrafish DNA sequence from clone CH211-12M10 in linkage group 17,
              complete sequence
          Length = 180659

 Score = 44.1 bits (22), Expect = 0.28
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 37     tgctatgaggaaattattacaa 58
              ||||||||||||||||||||||
Sbjct: 172710 tgctatgaggaaattattacaa 172731
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>gb|AC136222.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0088M05,
              complete sequence
          Length = 153368

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 92     agaagagaggagaaaaggagg 112
              |||||||||||||||||||||
Sbjct: 140157 agaagagaggagaaaaggagg 140177
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>gb|AC129330.4| Mus musculus BAC clone RP23-61B8 from chromosome 8, complete sequence
          Length = 218698

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 92    agaagagaggagaaaaggagg 112
             |||||||||||||||||||||
Sbjct: 15174 agaagagaggagaaaaggagg 15194
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>gb|AC125536.3| Mus musculus BAC clone RP24-142N21 from chromosome 8, complete
            sequence
          Length = 199356

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 92   agaagagaggagaaaaggagg 112
            |||||||||||||||||||||
Sbjct: 3705 agaagagaggagaaaaggagg 3685
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>gb|AC146561.22| Medicago truncatula clone mth2-12j18, complete sequence
          Length = 135940

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 68     acagtaccaagcaagataagt 88
              |||||||||||||||||||||
Sbjct: 124327 acagtaccaagcaagataagt 124307
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>emb|AL158817.11| Human DNA sequence from clone RP3-429O6 on chromosome 6 Contains part
             of a novel gene and a CpG island, complete sequence
          Length = 120529

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 95    agagaggagaaaaggaggcaaagag 119
             |||||||||||||||||| ||||||
Sbjct: 57721 agagaggagaaaaggaggaaaagag 57697
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>gb|AY267622.1| Bigelowiella natans ATP synthase gamma subunit mRNA, complete cds;
            nuclear gene for plastid product
          Length = 1351

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 45/53 (84%)
 Strand = Plus / Minus

                                                                 
Query: 169  gcgtcggcgccagcgacgatctcaaggatctctccggtgatcttggcctggcg 221
            ||||| || ||||||||||||||||| || ||   ||||||||| ||||||||
Sbjct: 1174 gcgtctgcaccagcgacgatctcaagaatttcattggtgatcttagcctggcg 1122
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>gb|AC068298.16| Homo sapiens 3 BAC RP11-496B10 (Roswell Park Cancer Institute Human
            BAC Library) complete sequence
          Length = 180335

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 96   gagaggagaaaaggaggcaaa 116
            |||||||||||||||||||||
Sbjct: 8264 gagaggagaaaaggaggcaaa 8244
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>gb|AC118139.3| Homo sapiens BAC clone RP11-461K12 from 4, complete sequence
          Length = 54171

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 92  agaagagaggagaaaaggagg 112
           |||||||||||||||||||||
Sbjct: 459 agaagagaggagaaaaggagg 479
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>gb|AC107365.2| Danio rerio, clone -241I7, complete sequence
          Length = 128411

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 92     agaagagaggagaaaaggagg 112
              |||||||||||||||||||||
Sbjct: 127553 agaagagaggagaaaaggagg 127533
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 92       agaagagaggagaaaaggagg 112
                |||||||||||||||||||||
Sbjct: 18346945 agaagagaggagaaaaggagg 18346965
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>gb|AF088219.1|AF088219 Homo sapiens CC chemokine gene cluster, complete sequence
          Length = 180919

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 82    gataagtactagaagagagga 102
             |||||||||||||||||||||
Sbjct: 90350 gataagtactagaagagagga 90330
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>emb|CR382300.12| Zebrafish DNA sequence from clone DKEY-25E11 in linkage group 19,
             complete sequence
          Length = 202006

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 92    agaagagaggagaaaaggagg 112
             |||||||||||||||||||||
Sbjct: 35716 agaagagaggagaaaaggagg 35736
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>emb|CT573215.2| Medicago truncatula chromosome 5 clone mth2-51h23, COMPLETE SEQUENCE
          Length = 121342

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 68     acagtaccaagcaagataagt 88
              |||||||||||||||||||||
Sbjct: 109649 acagtaccaagcaagataagt 109669
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>gb|AC006572.2|AC006572 Homo sapiens, clone hRPK.60_A_1, complete sequence
          Length = 179691

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 92     agaagagaggagaaaaggagg 112
              |||||||||||||||||||||
Sbjct: 178150 agaagagaggagaaaaggagg 178170
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>gb|AC004675.1|AC004675 Homo sapiens chromosome 17, clone hCIT.186_H_2, complete sequence
          Length = 128501

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 82    gataagtactagaagagagga 102
             |||||||||||||||||||||
Sbjct: 88143 gataagtactagaagagagga 88163
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>gb|CP000112.1| Desulfovibrio desulfuricans G20, complete genome
          Length = 3730232

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 278     cgctgctcatggcgctcatc 297
               ||||||||||||||||||||
Sbjct: 2764884 cgctgctcatggcgctcatc 2764903
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>emb|Z81119.1|CET10H4 Caenorhabditis elegans Cosmid T10H4, complete sequence
          Length = 33319

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 46    gaaattattacaaacacagt 65
             ||||||||||||||||||||
Sbjct: 12794 gaaattattacaaacacagt 12813
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>gb|AC126686.3| Mus musculus BAC clone RP23-148C24 from 18, complete sequence
          Length = 232817

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 99    aggagaaaaggaggcaaaga 118
             ||||||||||||||||||||
Sbjct: 78802 aggagaaaaggaggcaaaga 78783
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>gb|AC118351.14| Rattus norvegicus 1 BAC CH230-362O18 (Children's Hospital Oakland
              Research Institute) complete sequence
          Length = 143705

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 100    ggagaaaaggaggcaaagag 119
              ||||||||||||||||||||
Sbjct: 125135 ggagaaaaggaggcaaagag 125116
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>emb|AL365214.16| Human DNA sequence from clone RP11-506B6 on chromosome 6 Contains a fem-1
              homolog a (C. elegans) (FEM1A) pseudogene, a keratin 18
              (KRT18) pseudogene, a laminin receptor 1 (67kD, ribosomal
              protein SA) (LAMR1)(RPSA) pseudogene, a hepatocellular
              carcinoma-related putative tumor suppressor (LPTS)
              pseudogene and the 3' end of a novel gene, complete
              sequence
          Length = 210107

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 88     tactagaagagaggagaaaa 107
              ||||||||||||||||||||
Sbjct: 191747 tactagaagagaggagaaaa 191728
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>gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, complete sequence
          Length = 4895836

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 165     cagggcgtcggcgccagcga 184
               ||||||||||||||||||||
Sbjct: 1196169 cagggcgtcggcgccagcga 1196188
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>gb|AC006454.4| Homo sapiens PAC clone RP5-852P6 from 7, complete sequence
          Length = 153203

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 135   gcagctcagcccagggagga 154
             ||||||||||||||||||||
Sbjct: 13876 gcagctcagcccagggagga 13857
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>gb|AC011193.3| Homo sapiens chromosome 17, clone RP11-521P1, complete sequence
          Length = 181022

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 93    gaagagaggagaaaaggagg 112
             ||||||||||||||||||||
Sbjct: 27254 gaagagaggagaaaaggagg 27235
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>gb|AC073761.4| Mus musculus chromosome 17 clone RP23-33K21, complete sequence
          Length = 206801

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 97   agaggagaaaaggaggcaaagagt 120
            ||||||||||||||| ||||||||
Sbjct: 3628 agaggagaaaaggagtcaaagagt 3605
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>gb|AC092745.7| Homo sapiens 12 BAC RP11-90D4 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 152599

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 283   ctcatggcgctcatcctggc 302
             ||||||||||||||||||||
Sbjct: 39643 ctcatggcgctcatcctggc 39624
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>gb|AC092111.9| Homo sapiens 12 BAC RP11-266K4 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 138313

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 283    ctcatggcgctcatcctggc 302
              ||||||||||||||||||||
Sbjct: 114733 ctcatggcgctcatcctggc 114714
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>dbj|AB232920.1| Oryzias latipes hox gene cluster, complete cds, contains hoxBa, evx
             homologue on hoxBa
          Length = 235883

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 92    agaagagaggagaaaaggag 111
             ||||||||||||||||||||
Sbjct: 76918 agaagagaggagaaaaggag 76937
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>gb|AC175781.3| Cavia porcellus clone CH234-402D11, complete sequence
          Length = 183894

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 93    gaagagaggagaaaaggagg 112
             ||||||||||||||||||||
Sbjct: 48112 gaagagaggagaaaaggagg 48131
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>gb|AC122754.13| Mus musculus chromosome 1, clone RP24-510K10, complete sequence
          Length = 227950

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 103    gaaaaggaggcaaagagtta 122
              ||||||||||||||||||||
Sbjct: 105449 gaaaaggaggcaaagagtta 105468
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>gb|AC012336.9|AC012336 Homo sapiens chromosome 17, clone CTD-2236G12, complete sequence
          Length = 40405

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 93    gaagagaggagaaaaggagg 112
             ||||||||||||||||||||
Sbjct: 10132 gaagagaggagaaaaggagg 10151
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>dbj|AK043901.1| Mus musculus 10 days neonate cortex cDNA, RIKEN full-length
           enriched library, clone:A830048L15
           product:unclassifiable, full insert sequence
          Length = 1373

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 94  aagagaggagaaaaggaggcaaag 117
           |||||||||||| |||||||||||
Sbjct: 729 aagagaggagaagaggaggcaaag 706
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 90       ctagaagagaggagaaaagg 109
                ||||||||||||||||||||
Sbjct: 20600956 ctagaagagaggagaaaagg 20600937
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>gb|AC105916.4| Homo sapiens BAC clone RP11-180A12 from 4, complete sequence
          Length = 104269

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 134   ggcagctcagcccagggagg 153
             ||||||||||||||||||||
Sbjct: 81855 ggcagctcagcccagggagg 81874
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>emb|AL929073.19| Mouse DNA sequence from clone RP23-125D6 on chromosome 4, complete
             sequence
          Length = 129246

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 93    gaagagaggagaaaaggagg 112
             ||||||||||||||||||||
Sbjct: 16741 gaagagaggagaaaaggagg 16760
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>dbj|AP005611.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OSJNBa0051E21
          Length = 137959

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 90    ctagaagagaggagaaaagg 109
             ||||||||||||||||||||
Sbjct: 96514 ctagaagagaggagaaaagg 96495
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>gb|AC154142.24| Mus musculus chromosome 1, clone RP23-187M7, complete sequence
          Length = 237824

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 103    gaaaaggaggcaaagagtta 122
              ||||||||||||||||||||
Sbjct: 188353 gaaaaggaggcaaagagtta 188372
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>emb|AL845291.5| Mouse DNA sequence from clone RP23-1O11 on chromosome 2, complete
              sequence
          Length = 209914

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 94     aagagaggagaaaaggaggcaaag 117
              |||||||||||| |||||||||||
Sbjct: 178379 aagagaggagaagaggaggcaaag 178356
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>dbj|AB032374.1| Mus musculus gene for Tbr1, 5' flanking region
          Length = 4570

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 94   aagagaggagaaaaggaggcaaag 117
            |||||||||||| |||||||||||
Sbjct: 3905 aagagaggagaagaggaggcaaag 3882
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>dbj|AB015309.1| Acidovorax sp. TP4 gene for PHB depolymerase, complete cds
          Length = 3846

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 274  gtggcgctgctcatggcgct 293
            ||||||||||||||||||||
Sbjct: 2294 gtggcgctgctcatggcgct 2313


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,894,461
Number of Sequences: 3902068
Number of extensions: 2894461
Number of successful extensions: 64017
Number of sequences better than 10.0: 49
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 63810
Number of HSP's gapped (non-prelim): 208
length of query: 330
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 308
effective length of database: 17,147,199,772
effective search space: 5281337529776
effective search space used: 5281337529776
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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