>CRNL1_HUMAN (Q9BZJ0) Crooked neck-like protein 1 (Crooked neck homolog) (hCrn)|
          Length = 848

 Score = 55.1 bits (131), Expect = 1e-07
 Identities = 25/52 (48%), Positives = 34/52 (65%)
 Frame = -2

Query: 569 DDGSNIAFEEYIDYIFPDEVTLAPNLKILEAAYKWKKQKANDTQDD*SEHPE 414
           DDGS+  +EEY DYIFP++    PNLK+L  A  WKKQ+    ++D   HP+
Sbjct: 791 DDGSDAGWEEYFDYIFPEDAANQPNLKLLAMAKLWKKQQ--QEKEDAEHHPD 840

>CRNL1_RAT (P63155) Crooked neck-like protein 1 (Crooked neck homolog)|
           (Crooked neck protein)
          Length = 690

 Score = 51.6 bits (122), Expect = 2e-06
 Identities = 22/39 (56%), Positives = 28/39 (71%)
 Frame = -2

Query: 569 DDGSNIAFEEYIDYIFPDEVTLAPNLKILEAAYKWKKQK 453
           DDGS+  +EEY DYIFP++    PNLK+L  A  WKKQ+
Sbjct: 630 DDGSDAGWEEYYDYIFPEDAANQPNLKLLAMAKLWKKQQ 668

>CRNL1_MOUSE (P63154) Crooked neck-like protein 1 (Crooked neck homolog)|
          Length = 690

 Score = 51.6 bits (122), Expect = 2e-06
 Identities = 22/39 (56%), Positives = 28/39 (71%)
 Frame = -2

Query: 569 DDGSNIAFEEYIDYIFPDEVTLAPNLKILEAAYKWKKQK 453
           DDGS+  +EEY DYIFP++    PNLK+L  A  WKKQ+
Sbjct: 630 DDGSDAGWEEYYDYIFPEDAANQPNLKLLAMAKLWKKQQ 668

>CRN_DROME (P17886) Protein crooked neck|
          Length = 702

 Score = 48.1 bits (113), Expect = 2e-05
 Identities = 22/45 (48%), Positives = 27/45 (60%)
 Frame = -2

Query: 569 DDGSNIAFEEYIDYIFPDEVTLAPNLKILEAAYKWKKQKANDTQD 435
           D+G    +EE  DYIFP++    PNLK+L AA  WK QK N   D
Sbjct: 632 DNGVEEGWEEVFDYIFPEDEMARPNLKLLAAAKMWKTQKDNTVDD 676

>CLF1_PARBR (Q5K654) Pre-mRNA-splicing factor CLF1|
          Length = 677

 Score = 39.3 bits (90), Expect = 0.008
 Identities = 17/35 (48%), Positives = 28/35 (80%), Gaps = 1/35 (2%)
 Frame = -2

Query: 548 FEEYIDYIFP-DEVTLAPNLKILEAAYKWKKQKAN 447
           +EEY+DY+FP D+ + A   +IL+ A+KWKK++A+
Sbjct: 637 YEEYLDYMFPADDESSAKLSQILQMAHKWKKEQAS 671

>CLF1_EMENI (Q5BDX1) Pre-mRNA-splicing factor clf1|
          Length = 602

 Score = 38.1 bits (87), Expect = 0.018
 Identities = 17/38 (44%), Positives = 26/38 (68%), Gaps = 1/38 (2%)
 Frame = -2

Query: 548 FEEYIDYIFPDEVTLAPNL-KILEAAYKWKKQKANDTQ 438
           +EEY+DY+FP +   A NL K+L  A++WK++ A   Q
Sbjct: 565 YEEYMDYVFPADDQSAANLSKLLRMAHQWKQETAGGQQ 602

>CLF1_SCHPO (P87312) Pre-mRNA-splicing factor clf1 (Complexed with cdc5 protein|
           4) (Cell cycle control protein cwf4)
          Length = 674

 Score = 37.7 bits (86), Expect = 0.023
 Identities = 20/42 (47%), Positives = 28/42 (66%), Gaps = 2/42 (4%)
 Frame = -2

Query: 569 DDGSNIAFEEYIDYIFPDEVTLAPN--LKILEAAYKWKKQKA 450
           +DGS   FEEY+DY+FPD  T   +   K+LE + KWK++ A
Sbjct: 630 EDGS---FEEYLDYLFPDTATDQGDKMRKMLELSRKWKEEMA 668

>CLF1_ASPFU (Q4WT84) Pre-mRNA-splicing factor clf1|
          Length = 676

 Score = 37.7 bits (86), Expect = 0.023
 Identities = 16/31 (51%), Positives = 24/31 (77%), Gaps = 1/31 (3%)
 Frame = -2

Query: 548 FEEYIDYIFP-DEVTLAPNLKILEAAYKWKK 459
           +EEY+DY+FP D+   A   KIL+AA++WK+
Sbjct: 639 YEEYMDYVFPADDQAAASLTKILQAAHRWKQ 669

>CLF1_YARLI (Q6C186) Pre-mRNA-splicing factor CLF1|
          Length = 676

 Score = 37.0 bits (84), Expect = 0.039
 Identities = 19/38 (50%), Positives = 24/38 (63%)
 Frame = -2

Query: 569 DDGSNIAFEEYIDYIFPDEVTLAPNLKILEAAYKWKKQ 456
           +DG+   FEEYIDY+FP +       K+LE A KWK Q
Sbjct: 639 EDGT---FEEYIDYVFPTDEEDKSFSKLLENARKWKLQ 673

>CLF1_YEAST (Q12309) Pre-mRNA-splicing factor CLF1 (Crooked neck-like factor 1)|
           (PRP19-associated complex protein 77) (Synthetic lethal
           with CDC40 protein 3)
          Length = 687

 Score = 35.0 bits (79), Expect = 0.15
 Identities = 16/34 (47%), Positives = 23/34 (67%), Gaps = 2/34 (5%)
 Frame = -2

Query: 545 EEYIDYIFPDEV--TLAPNLKILEAAYKWKKQKA 450
           EE++DYIFPD++        K LE A KWK+++A
Sbjct: 653 EEFVDYIFPDDIDDDKPKPSKFLELAKKWKQEQA 686

>CLF1_USTMA (Q4PB37) Pre-mRNA-splicing factor CLF1|
          Length = 781

 Score = 32.7 bits (73), Expect = 0.74
 Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
 Frame = -2

Query: 569 DDGSNIAFEEYIDYIFPDEVTLAPN-LKILEAAYKWKKQKANDTQDD*SEHPEAA 408
           +D ++ A EEY D IFPD+        K+L+ A+ W+  +A   Q    +   +A
Sbjct: 687 EDSADGAMEEYYDLIFPDDQDEGKGAFKLLQMAHAWRAAQAAKEQQQQQQQSSSA 741

>CLF1_NEUCR (Q7SGD2) Pre-mRNA-splicing factor clf-1|
          Length = 695

 Score = 32.3 bits (72), Expect = 0.97
 Identities = 16/34 (47%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = -2

Query: 548 FEEYIDYIFPDEVTLAPNL-KILEAAYKWKKQKA 450
           +EEY+DYIFP +     NL  +L  A  WK+Q A
Sbjct: 645 WEEYVDYIFPADDQQTKNLSSLLAMANAWKQQAA 678

>ARSB_BACSU (P45946) Arsenite resistance protein arsB|
          Length = 346

 Score = 31.6 bits (70), Expect = 1.7
 Identities = 26/99 (26%), Positives = 44/99 (44%), Gaps = 8/99 (8%)
 Frame = -1

Query: 315 EFALPLIPYIWPFCSLFSGVIEAVFLT--------DGC*IIWVLLPLD*TVCSLLGVNFY 160
           E+A  L+ +   F  LFS V   +F+T        +G  +   +  +  +V   LGV F 
Sbjct: 135 EYAAGLVAFNSIFQMLFSSVYAYIFVTVIPQWLGMEGAVVNITMAEVAKSVFIYLGVPFI 194

Query: 159 LGFVTPVPWVECNSNMYYLSLALYHVSPIWYLVLNCQIV 43
            G VT   +V+     +Y  + +  +SPI  + L   I+
Sbjct: 195 AGMVTRYIFVKVKGKEWYEKVFIPKISPITLIALLFTII 233

>CLF1_CRYNV (Q9HF03) Pre-mRNA-splicing factor CLF1 (crooked-neck-like protein|
           1)
          Length = 724

 Score = 31.6 bits (70), Expect = 1.7
 Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
 Frame = -2

Query: 569 DDGSNIAFEEYIDYIFPDEVTLA--PNLKILEAAYKWKKQKANDTQD 435
           +DGS    EEY D +FPD+   A   + K  +AA  W +Q+A   ++
Sbjct: 648 EDGSG-ELEEYWDLVFPDDEKEANPTSFKFFQAAQAWAQQRAGQGEE 693

>CLF1_CRYNE (Q5KNE9) Pre-mRNA-splicing factor CLF1|
          Length = 726

 Score = 31.6 bits (70), Expect = 1.7
 Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
 Frame = -2

Query: 569 DDGSNIAFEEYIDYIFPDEVTLA--PNLKILEAAYKWKKQKANDTQD 435
           +DGS    EEY D +FPD+   A   + K  +AA  W +Q+A   ++
Sbjct: 648 EDGSG-ELEEYWDLVFPDDEREANPTSFKFFQAAQAWAQQRAGQGEE 693

>CLF1_CANAL (Q5AED6) Pre-mRNA-splicing factor CLF1|
          Length = 758

 Score = 30.0 bits (66), Expect = 4.8
 Identities = 16/33 (48%), Positives = 19/33 (57%), Gaps = 3/33 (9%)
 Frame = -2

Query: 545 EEYIDYIFPDEVTL---APNLKILEAAYKWKKQ 456
           EEYIDYIFPD+ +        K L  A KW +Q
Sbjct: 725 EEYIDYIFPDDESKKLPGKMSKFLANAKKWAQQ 757

>CLF1_MAGGR (Q527H0) Pre-mRNA-splicing factor CLF1|
          Length = 691

 Score = 30.0 bits (66), Expect = 4.8
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = -2

Query: 548 FEEYIDYIFPDEVTLAPNLKILEAAYKWKKQ 456
           +EEY+DYIFP +  +  NL  + A  + +KQ
Sbjct: 641 WEEYVDYIFPADEQVGKNLMNMMAKARARKQ 671

>GTR3_HUMAN (P11169) Solute carrier family 2, facilitated glucose transporter|
           member 3 (Glucose transporter type 3, brain)
          Length = 496

 Score = 29.3 bits (64), Expect = 8.2
 Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
 Frame = -3

Query: 352 VEKFSITRGCRRGVCAASYTLHMAFLQLVQWSY*SCISDGWMLNYLGSVTP-GLNGMFVV 176
           V   ++T GC  G+C  + ++ M  L  +       +  G++  Y+G ++P  L G F  
Sbjct: 97  VNLLAVTGGCFMGLCKVAKSVEMLILGRLVIGLFCGLCTGFVPMYIGEISPTALRGAFGT 156

Query: 175 RSQL 164
            +QL
Sbjct: 157 LNQL 160


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 84,792,422
Number of Sequences: 219361
Number of extensions: 1773946
Number of successful extensions: 4117
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 4031
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4115
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4757699440
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)