ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags25d19
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 90 9e-15
2dbj|AP004730.2| Oryza sativa (japonica cultivar-group) genomic D... 90 9e-15
3dbj|AP004328.2| Oryza sativa (japonica cultivar-group) genomic D... 90 9e-15
4ref|XM_475092.1| Oryza sativa (japonica cultivar-group), predic... 76 1e-10
5dbj|AK100478.1| Oryza sativa (japonica cultivar-group) cDNA clon... 76 1e-10
6gb|AC135428.2| Oryza sativa (japonica cultivar-group) chromosome... 68 3e-08
7dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 68 3e-08
8dbj|AK103185.1| Oryza sativa (japonica cultivar-group) cDNA clon... 68 3e-08
9emb|CT033771.1| Medicago truncatula chromosome 5 clone mth2-15i1... 52 0.002
10gb|AC021829.8| Homo sapiens chromosome 11, clone RP11-436H16, co... 50 0.008
11ref|NM_123542.2| Arabidopsis thaliana unknown protein AT5G41770 ... 48 0.032
12emb|BX830741.1|CNS09ZEZ Arabidopsis thaliana Full-length cDNA Co... 48 0.032
13dbj|AB016871.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 48 0.032
14gb|BT002040.1| Arabidopsis thaliana cell cycle control crn (croo... 48 0.032
15gb|AC151477.1| Mus musculus BAC clone RP23-154G20 from 7, comple... 44 0.50
16emb|CR450739.19| Zebrafish DNA sequence from clone DKEY-175B17 i... 42 2.0
17gb|AC020980.6| Homo sapiens chromosome 5 clone RPCI-1_167G20, co... 42 2.0
18gb|AC022113.6| Homo sapiens chromosome 5 clone CTC-461F20, compl... 42 2.0
19gb|AC158242.4| Pan troglodytes BAC clone CH251-354C10 from chrom... 42 2.0
20emb|BX248102.11| Zebrafish DNA sequence from clone CH211-243F3, ... 42 2.0
21emb|AL935298.5| Zebrafish DNA sequence from clone CH211-160I12, ... 42 2.0
22ref|XM_636894.1| Dictyostelium discoideum hypothetical protein (... 40 7.7
23gb|AY632360.1| Gossypium hirsutum BAC 106I22, complete sequence 40 7.7
24gb|CP000360.1| Acidobacteria bacterium Ellin345, complete genome 40 7.7
25gb|AC147020.2| Mus musculus BAC clone RP23-267A11 from chromosom... 40 7.7
26gb|AC124168.3| Mus musculus BAC clone RP23-143G9 from chromosome... 40 7.7
27gb|AC107611.6| Rattus norvegicus 10 BAC CH230-195I24 (Children's... 40 7.7
28emb|AL596214.6| Human DNA sequence from clone RP11-27A24 on chro... 40 7.7
29emb|BX957221.1| Methanococcus maripaludis S2 complete genome; se... 40 7.7
30gb|AC166146.17| Medicago truncatula clone mth2-174g5, complete s... 40 7.7
31gb|AC105185.5| Homo sapiens chromosome 8, clone RP11-1113C11, co... 40 7.7
32gb|AC098868.3| Homo sapiens BAC clone RP11-545H22 from 4, comple... 40 7.7
33gb|AY110502.1| Zea mays CL9857_1 mRNA sequence 40 7.7
34emb|Z71458.1|SCYNL182C S.cerevisiae chromosome XIV reading frame... 40 7.7 
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 89.7 bits (45), Expect = 9e-15
 Identities = 81/93 (87%)
 Strand = Plus / Minus

                                                                            
Query: 453      cttctgcttcttccacttgtaagcagcttccaatatcttgaggttcggtgccagcgtgac 512
                |||||||||||||||||| || || ||||| |  ||||||||||| ||||||||||  ||
Sbjct: 19012655 cttctgcttcttccacttataggccgcttcgaggatcttgaggtttggtgccagcgcaac 19012596

                                                 
Query: 513      ttcatcagggaagatataatcgatgtactcctc 545
                 ||||||||||| |||||||| |||||||||||
Sbjct: 19012595 ctcatcagggaaaatataatccatgtactcctc 19012563
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>dbj|AP004730.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
              clone:OSJNBa0009J19
          Length = 156988

 Score = 89.7 bits (45), Expect = 9e-15
 Identities = 81/93 (87%)
 Strand = Plus / Minus

                                                                          
Query: 453    cttctgcttcttccacttgtaagcagcttccaatatcttgaggttcggtgccagcgtgac 512
              |||||||||||||||||| || || ||||| |  ||||||||||| ||||||||||  ||
Sbjct: 105325 cttctgcttcttccacttataggccgcttcgaggatcttgaggtttggtgccagcgcaac 105266

                                               
Query: 513    ttcatcagggaagatataatcgatgtactcctc 545
               ||||||||||| |||||||| |||||||||||
Sbjct: 105265 ctcatcagggaaaatataatccatgtactcctc 105233
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>dbj|AP004328.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OJ1616_B03
          Length = 96081

 Score = 89.7 bits (45), Expect = 9e-15
 Identities = 81/93 (87%)
 Strand = Plus / Minus

                                                                         
Query: 453   cttctgcttcttccacttgtaagcagcttccaatatcttgaggttcggtgccagcgtgac 512
             |||||||||||||||||| || || ||||| |  ||||||||||| ||||||||||  ||
Sbjct: 10139 cttctgcttcttccacttataggccgcttcgaggatcttgaggtttggtgccagcgcaac 10080

                                              
Query: 513   ttcatcagggaagatataatcgatgtactcctc 545
              ||||||||||| |||||||| |||||||||||
Sbjct: 10079 ctcatcagggaaaatataatccatgtactcctc 10047
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>ref|XM_475092.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2172

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 95/114 (83%)
 Strand = Plus / Minus

                                                                        
Query: 453  cttctgcttcttccacttgtaagcagcttccaatatcttgaggttcggtgccagcgtgac 512
            |||||||||||||||||| || || ||||| |  ||||||||||| || |||||||  ||
Sbjct: 2148 cttctgcttcttccacttataggctgcttcaaggatcttgaggtttggagccagcgcaac 2089

                                                                  
Query: 513  ttcatcagggaagatataatcgatgtactcctcgaacgcaatattggagccatc 566
             ||||| ||||| |||||||| |||||||| ||  |||||| | ||||||||||
Sbjct: 2088 ctcatcggggaaaatataatcaatgtactcttcatacgcaacagtggagccatc 2035
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>dbj|AK100478.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023095B21, full
            insert sequence
          Length = 2683

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 95/114 (83%)
 Strand = Plus / Minus

                                                                        
Query: 453  cttctgcttcttccacttgtaagcagcttccaatatcttgaggttcggtgccagcgtgac 512
            |||||||||||||||||| || || ||||| |  ||||||||||| || |||||||  ||
Sbjct: 2227 cttctgcttcttccacttataggctgcttcaaggatcttgaggtttggagccagcgcaac 2168

                                                                  
Query: 513  ttcatcagggaagatataatcgatgtactcctcgaacgcaatattggagccatc 566
             ||||| ||||| |||||||| |||||||| ||  |||||| | ||||||||||
Sbjct: 2167 ctcatcggggaaaatataatcaatgtactcttcatacgcaacagtggagccatc 2114
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>gb|AC135428.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0628H02,
            complete sequence
          Length = 65115

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 76/90 (84%)
 Strand = Plus / Plus

                                                                        
Query: 453  cttctgcttcttccacttgtaagcagcttccaatatcttgaggttcggtgccagcgtgac 512
            |||||||||||||||||| || || ||||| |  ||||||||||| || |||||||  ||
Sbjct: 1704 cttctgcttcttccacttataggctgcttcaaggatcttgaggtttggagccagcgcaac 1763

                                          
Query: 513  ttcatcagggaagatataatcgatgtactc 542
             ||||| ||||| |||||||| ||||||||
Sbjct: 1764 ctcatcggggaaaatataatcaatgtactc 1793
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 76/90 (84%)
 Strand = Plus / Plus

                                                                            
Query: 453      cttctgcttcttccacttgtaagcagcttccaatatcttgaggttcggtgccagcgtgac 512
                |||||||||||||||||| || || ||||| |  ||||||||||| || |||||||  ||
Sbjct: 12468166 cttctgcttcttccacttataggctgcttcaaggatcttgaggtttggagccagcgcaac 12468225

                                              
Query: 513      ttcatcagggaagatataatcgatgtactc 542
                 ||||| ||||| |||||||| ||||||||
Sbjct: 12468226 ctcatcggggaaaatataatcaatgtactc 12468255
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>dbj|AK103185.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033121L02, full
            insert sequence
          Length = 1504

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 76/90 (84%)
 Strand = Plus / Minus

                                                                        
Query: 453  cttctgcttcttccacttgtaagcagcttccaatatcttgaggttcggtgccagcgtgac 512
            |||||||||||||||||| || || ||||| |  ||||||||||| || |||||||  ||
Sbjct: 1267 cttctgcttcttccacttataggctgcttcaaggatcttgaggtttggagccagcgcaac 1208

                                          
Query: 513  ttcatcagggaagatataatcgatgtactc 542
             ||||| ||||| |||||||| ||||||||
Sbjct: 1207 ctcatcggggaaaatataatcaatgtactc 1178
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>emb|CT033771.1| Medicago truncatula chromosome 5 clone mth2-15i14, COMPLETE SEQUENCE
          Length = 116146

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 35/38 (92%)
 Strand = Plus / Plus

                                                    
Query: 457    tgcttcttccacttgtaagcagcttccaatatcttgag 494
              ||||||||||| ||||||||||||||||  ||||||||
Sbjct: 110254 tgcttcttccatttgtaagcagcttccatgatcttgag 110291
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>gb|AC021829.8| Homo sapiens chromosome 11, clone RP11-436H16, complete sequence
          Length = 163497

 Score = 50.1 bits (25), Expect = 0.008
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                       
Query: 69     accaaatgggagaaacatgatatag 93
              |||||||||||||||||||||||||
Sbjct: 137500 accaaatgggagaaacatgatatag 137524
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>ref|NM_123542.2| Arabidopsis thaliana unknown protein AT5G41770 mRNA, complete cds
          Length = 2429

 Score = 48.1 bits (24), Expect = 0.032
 Identities = 42/48 (87%)
 Strand = Plus / Minus

                                                            
Query: 452  ccttctgcttcttccacttgtaagcagcttccaatatcttgaggttcg 499
            |||||||||||||||| ||||| |||||||| |  |||||||| ||||
Sbjct: 2120 ccttctgcttcttccatttgtatgcagcttcaagaatcttgagattcg 2073
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>emb|BX830741.1|CNS09ZEZ Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTLS19ZF06 of Adult vegetative tissue of strain col-0
            of Arabidopsis thaliana (thale cress)
          Length = 1155

 Score = 48.1 bits (24), Expect = 0.032
 Identities = 42/48 (87%)
 Strand = Plus / Minus

                                                            
Query: 452  ccttctgcttcttccacttgtaagcagcttccaatatcttgaggttcg 499
            |||||||||||||||| ||||| |||||||| |  |||||||| ||||
Sbjct: 1052 ccttctgcttcttccatttgtatgcagcttcaagaatcttgagattcg 1005
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>dbj|AB016871.1| Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K16L22
          Length = 79109

 Score = 48.1 bits (24), Expect = 0.032
 Identities = 42/48 (87%)
 Strand = Plus / Minus

                                                             
Query: 452   ccttctgcttcttccacttgtaagcagcttccaatatcttgaggttcg 499
             |||||||||||||||| ||||| |||||||| |  |||||||| ||||
Sbjct: 22255 ccttctgcttcttccatttgtatgcagcttcaagaatcttgagattcg 22208
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>gb|BT002040.1| Arabidopsis thaliana cell cycle control crn (crooked neck)
            protein-like (At5g41770) mRNA, complete cds
          Length = 2428

 Score = 48.1 bits (24), Expect = 0.032
 Identities = 42/48 (87%)
 Strand = Plus / Minus

                                                            
Query: 452  ccttctgcttcttccacttgtaagcagcttccaatatcttgaggttcg 499
            |||||||||||||||| ||||| |||||||| |  |||||||| ||||
Sbjct: 2120 ccttctgcttcttccatttgtatgcagcttcaagaatcttgagattcg 2073
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>gb|AC151477.1| Mus musculus BAC clone RP23-154G20 from 7, complete sequence
          Length = 212010

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 69    accaaatgggagaaacatgata 90
             ||||||||||||||||||||||
Sbjct: 49349 accaaatgggagaaacatgata 49328
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>emb|CR450739.19| Zebrafish DNA sequence from clone DKEY-175B17 in linkage group 13,
            complete sequence
          Length = 180895

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 353  gtctgatttttgcatggtagt 373
            |||||||||||||||||||||
Sbjct: 6068 gtctgatttttgcatggtagt 6088
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>gb|AC020980.6| Homo sapiens chromosome 5 clone RPCI-1_167G20, complete sequence
          Length = 175177

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 448    tttgccttctgcttcttccac 468
              |||||||||||||||||||||
Sbjct: 163327 tttgccttctgcttcttccac 163347
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>gb|AC022113.6| Homo sapiens chromosome 5 clone CTC-461F20, complete sequence
          Length = 188570

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 448    tttgccttctgcttcttccac 468
              |||||||||||||||||||||
Sbjct: 161912 tttgccttctgcttcttccac 161892
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>gb|AC158242.4| Pan troglodytes BAC clone CH251-354C10 from chromosome unknown, complete
              sequence
          Length = 182200

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 448    tttgccttctgcttcttccac 468
              |||||||||||||||||||||
Sbjct: 117261 tttgccttctgcttcttccac 117241
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>emb|BX248102.11| Zebrafish DNA sequence from clone CH211-243F3, complete sequence
          Length = 150473

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 353    gtctgatttttgcatggtagt 373
              |||||||||||||||||||||
Sbjct: 144410 gtctgatttttgcatggtagt 144430
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>emb|AL935298.5| Zebrafish DNA sequence from clone CH211-160I12, complete sequence
          Length = 155911

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 353   gtctgatttttgcatggtagt 373
             |||||||||||||||||||||
Sbjct: 94323 gtctgatttttgcatggtagt 94303
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>ref|XM_636894.1| Dictyostelium discoideum hypothetical protein (DDB0206216), partial
            mRNA
          Length = 2118

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 512  cttcatcagggaagatataatcga 535
            |||| |||||||||||||||||||
Sbjct: 1999 cttcttcagggaagatataatcga 1976
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>gb|AY632360.1| Gossypium hirsutum BAC 106I22, complete sequence
          Length = 135862

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 104   aaataatacatgtttgagtt 123
             ||||||||||||||||||||
Sbjct: 84391 aaataatacatgtttgagtt 84410
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>gb|CP000360.1| Acidobacteria bacterium Ellin345, complete genome
          Length = 5650368

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 305     agcgcaaactccacgcctac 324
               ||||||||||||||||||||
Sbjct: 4997834 agcgcaaactccacgcctac 4997853
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>gb|AC147020.2| Mus musculus BAC clone RP23-267A11 from chromosome 18, complete sequence
          Length = 204727

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 282    gccatatgtagggtataaga 301
              ||||||||||||||||||||
Sbjct: 173190 gccatatgtagggtataaga 173171
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>gb|AC124168.3| Mus musculus BAC clone RP23-143G9 from chromosome 18, complete sequence
          Length = 203187

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 282   gccatatgtagggtataaga 301
             ||||||||||||||||||||
Sbjct: 98263 gccatatgtagggtataaga 98244
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>gb|AC107611.6| Rattus norvegicus 10 BAC CH230-195I24 (Children's Hospital Oakland
              Research Institute) complete sequence
          Length = 211076

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 311    aactccacgcctacacccgc 330
              ||||||||||||||||||||
Sbjct: 144471 aactccacgcctacacccgc 144452
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>emb|AL596214.6| Human DNA sequence from clone RP11-27A24 on chromosome 1, complete
             sequence
          Length = 74625

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 245   acagcttcaataactccact 264
             ||||||||||||||||||||
Sbjct: 20251 acagcttcaataactccact 20232
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>emb|BX957221.1| Methanococcus maripaludis S2 complete genome; segment 3/5
          Length = 348230

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 255    taactccactgaacaagctgcaaa 278
              ||||||| ||||||||||||||||
Sbjct: 341213 taactcccctgaacaagctgcaaa 341236
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>gb|AC166146.17| Medicago truncatula clone mth2-174g5, complete sequence
          Length = 110916

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 459   cttcttccacttgtaagcagcttc 482
             ||||||||| ||||||||||||||
Sbjct: 57481 cttcttccatttgtaagcagcttc 57504
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>gb|AC105185.5| Homo sapiens chromosome 8, clone RP11-1113C11, complete sequence
          Length = 152141

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 116   tttgagttacattcaaccca 135
             ||||||||||||||||||||
Sbjct: 76119 tttgagttacattcaaccca 76100
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>gb|AC098868.3| Homo sapiens BAC clone RP11-545H22 from 4, complete sequence
          Length = 124972

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 511    acttcatcagggaagatata 530
              ||||||||||||||||||||
Sbjct: 113794 acttcatcagggaagatata 113813
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>gb|AY110502.1| Zea mays CL9857_1 mRNA sequence
          Length = 623

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 47/56 (83%)
 Strand = Plus / Plus

                                                                   
Query: 511 acttcatcagggaagatataatcgatgtactcctcgaacgcaatattggagccatc 566
           |||||||||||||| || ||||| || ||||||||  | || ||| ||||||||||
Sbjct: 370 acttcatcagggaaaatgtaatctatatactcctcatatgctatagtggagccatc 425
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>emb|Z71458.1|SCYNL182C S.cerevisiae chromosome XIV reading frame ORF YNL182c
          Length = 2825

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 445  tcgtttgccttctgcttctt 464
            ||||||||||||||||||||
Sbjct: 1403 tcgtttgccttctgcttctt 1422


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,564,219
Number of Sequences: 3902068
Number of extensions: 4564219
Number of successful extensions: 77688
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 77574
Number of HSP's gapped (non-prelim): 114
length of query: 570
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 547
effective length of database: 17,143,297,704
effective search space: 9377383844088
effective search space used: 9377383844088
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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