ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal1d18
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|M55449.1|BLYRCABG Hordeum vulgare subsp. vulgare ribulose 1,5... 488 e-135
2gb|M55447.1|BLYRCAA2 Hordeum vulgare rubisco activase (RcaA2) mR... 404 e-110
3gb|M55446.1|BLYRCAA1 Hordeum vulgare rubisco activase (RcaA1) mR... 402 e-109
4gb|AY206372.1| Triticum aestivum ribulose-1,5-bisphosphate carbo... 280 3e-72
5gb|BC029790.1| Homo sapiens, clone IMAGE:5192697, mRNA 256 4e-65
6gb|AY312574.1| Deschampsia antarctica Rubisco activase beta form... 182 5e-43
7gb|AY312573.1| Deschampsia antarctica Rubisco activase alpha for... 131 2e-27
8gb|AC137064.4| Oryza sativa (japonica cultivar-group) chromosome... 94 3e-16
9gb|AC133008.3| Oryza sativa (japonica cultivar-group) chromosome... 94 3e-16
10gb|U74321.1|OSU74321 Oryza sativa ribulose-1,5-bisphosphate carb... 94 3e-16
11dbj|AB110180.1| Oryza sativa (japonica cultivar-group) mRNA for ... 94 3e-16
12dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 94 3e-16
13dbj|AK104332.1| Oryza sativa (japonica cultivar-group) cDNA clon... 94 3e-16
14dbj|AK064986.1| Oryza sativa (japonica cultivar-group) cDNA clon... 94 3e-16
15dbj|AK060847.1| Oryza sativa (japonica cultivar-group) cDNA clon... 94 3e-16
16dbj|AK060841.1| Oryza sativa (japonica cultivar-group) cDNA clon... 94 3e-16
17gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 94 3e-16
18dbj|AB034748.1| Oryza sativa OsrcaA2 mRNA for RuBisCO activase s... 94 3e-16
19dbj|AB034698.1| Oryza sativa OsrcaA1 mRNA for RuBisCO activase l... 94 3e-16
20gb|DQ359157.1| Oryza sativa (japonica cultivar-group) chloroplas... 82 1e-12
21dbj|AK119513.1| Oryza sativa (japonica cultivar-group) cDNA clon... 78 2e-11
22gb|DQ023668.1| Oryza sativa (indica cultivar-group) cultivar Tet... 70 5e-09
23dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 54 3e-04
24dbj|AP005592.2| Oryza sativa (japonica cultivar-group) genomic D... 54 3e-04
25emb|BX000451.4| Zebrafish DNA sequence from clone CH211-30E10, c... 44 0.27
26gb|AC166748.3| Mus musculus chromosome 19, clone RP23-345M21, co... 42 1.1
27gb|AC138278.9| Mus musculus chromosome 8, clone RP23-378E4, comp... 42 1.1
28emb|BX119904.4| Human DNA sequence from clone RP11-232D9 on chro... 42 1.1
29gb|AC161354.2| Mus musculus chromosome 8, clone RP23-373C4, comp... 42 1.1
30gb|AC152426.10| Mus musculus chromosome 19, clone RP23-216E17, c... 42 1.1
31gb|AC117829.7| Mus musculus chromosome 19, clone RP24-95D15, com... 42 1.1
32dbj|AK040781.1| Mus musculus adult male aorta and vein cDNA, RIK... 42 1.1
33dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.1
34gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 42 1.1
35emb|AL731748.3|CNS08C7X Oryza sativa chromosome 12, . BAC OSJNBa... 42 1.1
36gb|AC164586.7| Mus musculus chromosome 8, clone RP24-258B3, comp... 42 1.1
37gb|AC003067.59| Mus musculus Chromosome 16 BAC Clone tbx3 Synten... 40 4.2
38gb|AF414359.1|AF414356S4 Mus musculus thioredoxin reductase (Trx... 40 4.2
39gb|AC133488.30| Mus musculus strain C57BL/6J clone rp23-432e14, ... 40 4.2
40gb|AC019210.7| Homo sapiens BAC clone RP11-449G3 from 7, complet... 40 4.2
41gb|AC011228.9| Homo sapiens BAC clone GS1-18A18 from 7, complete... 40 4.2
42gb|AC140953.1| Pan troglodytes BAC clone RP43-37K18 from 7, comp... 40 4.2
43gb|AC139338.3| Homo sapiens 3 BAC RP11-449O23 (Roswell Park Canc... 40 4.2
44dbj|AP007170.1| Aspergillus oryzae RIB40 genomic DNA, SC138 40 4.2
45gb|AC003066.18| Mus musculus Chromosome 16 BAC Clone tbx1 Synten... 40 4.2
46emb|BX000985.18| Zebrafish DNA sequence from clone DKEY-13M3 in ... 40 4.2
47ref|XM_222660.3| PREDICTED: Rattus norvegicus leiomodin 1 (smoot... 40 4.2
48gb|AC133487.14| Mus musculus strain C57BL/6J clone rp23-285e22, ... 40 4.2
49gb|AC007625.2|AC007625 Genomic sequence of Homo sapiens clone 23... 40 4.2
50gb|AC091764.35| Mus musculus strain C57BL/6J chromosome 10 clone... 40 4.2 
>gb|M55449.1|BLYRCABG Hordeum vulgare subsp. vulgare ribulose 1,5-bisphosphate carboxylase
            activase (RcaB) gene, complete cds; and ribulose
            1,5-bisphosphate carboxylase activase  (RcaA) gene,
            alternatively spliced, complete cds
          Length = 8766

 Score =  488 bits (246), Expect = e-135
 Identities = 272/281 (96%), Gaps = 1/281 (0%)
 Strand = Plus / Minus

                                                                        
Query: 18   aatgaatactgagcagtgacaaatgataagtaggtgtattggtctttgccaaatgggtat 77
            ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7802 aatgaatactgag-agtgacaaatgataagtaggtgtattggtctttgccaaatgggtat 7744

                                                                        
Query: 78   actcaatatatttagagatatattaacaaaacatgcccagcaatcgcttggatgcgatgc 137
            || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7743 acacaatatatttagagatatattaacaaaacatgcccagcaatcgcttggatgcgatgc 7684

                                                                        
Query: 138  ggacttaggtaggtaaaacatcagatattaaaagtggcatgcttaaaaggtgtaaaggca 197
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7683 ggacttaggtaggtaaaacatcagatattaaaagtggcatgcttaaaaggtgtaaaggca 7624

                                                                        
Query: 198  gctgccgtcgtnnttnnttgccgttgggtcgtagttcttggcattttggtcggngcaacc 257
            |||||||||||   |  |||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 7623 gctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgcaacc 7564

                                                     
Query: 258  ttccggcacggccaaagtaccttgctgtgctcctttacctc 298
            ||||||||||| |||||||||||||||||||||||||||||
Sbjct: 7563 ttccggcacgggcaaagtaccttgctgtgctcctttacctc 7523



 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 27/27 (100%)
 Strand = Plus / Minus

                                       
Query: 294  acctcctcctatgcagcaagagatggt 320
            |||||||||||||||||||||||||||
Sbjct: 7355 acctcctcctatgcagcaagagatggt 7329
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>gb|M55447.1|BLYRCAA2 Hordeum vulgare rubisco activase (RcaA2) mRNA, complete cds
          Length = 1709

 Score =  404 bits (204), Expect = e-110
 Identities = 251/263 (95%), Gaps = 4/263 (1%)
 Strand = Plus / Minus

                                                                        
Query: 62   tttgccaaatgggtatactcaatat-atttagagatatattaacaaaacatgcccagcaa 120
            |||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||
Sbjct: 1709 tttgccaaatgggtatacacaatattatttagagatatattaacaaaacatgcccagcaa 1650

                                                                        
Query: 121  tcgcttggatgcgatgcggacttag-gtaggtaaaacatcagatattaaaagtggcatgc 179
            ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 1649 tcgcttggatgcgatgcggacttagtgtaggtaaaacatcagatattaaaagtggcatgc 1590

                                                                        
Query: 180  ttaaaaggtgtaaaggcagctgccg-tcgtnnttnnttgccgttgggtcgtagttcttgg 238
            ||||||||||||||||||||||||| ||||   |  ||||||||||||||||||||||||
Sbjct: 1589 ttaaaaggtgtaaaggcagctgccgttcgtcgctccttgccgttgggtcgtagttcttgg 1530

                                                                        
Query: 239  cattttggtcggngcaaccttccggca-cggccaaagtaccttgctgtgctcctttacct 297
            |||||||||||| |||||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct: 1529 cattttggtcggtgcaaccttccggcatcgggcaaagtaccttgctgtgctcctttacct 1470

                                   
Query: 298  cctcctatgcagcaagagatggt 320
            |||||||||||||||||||||||
Sbjct: 1469 cctcctatgcagcaagagatggt 1447
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>gb|M55446.1|BLYRCAA1 Hordeum vulgare rubisco activase (RcaA1) mRNA, 3' end
          Length = 1394

 Score =  402 bits (203), Expect = e-109
 Identities = 222/230 (96%)
 Strand = Plus / Minus

                                                                        
Query: 67   caaatgggtatactcaatatatttagagatatattaacaaaacatgcccagcaatcgctt 126
            ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1394 caaatgggtatacacaatatatttagagatatattaacaaaacatgcccagcaatcgctt 1335

                                                                        
Query: 127  ggatgcgatgcggacttaggtaggtaaaacatcagatattaaaagtggcatgcttaaaag 186
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1334 ggatgcgatgcggacttaggtaggtaaaacatcagatattaaaagtggcatgcttaaaag 1275

                                                                        
Query: 187  gtgtaaaggcagctgccgtcgtnnttnnttgccgttgggtcgtagttcttggcattttgg 246
            ||||||||||||||||||||||   |  ||||||||||||||||||||||||||||||||
Sbjct: 1274 gtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttgg 1215

                                                              
Query: 247  tcggngcaaccttccggcacggccaaagtaccttgctgtgctcctttacc 296
            |||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 1214 tcggtgcaaccttccggcacgggcaaagtaccttgctgtgctcctttacc 1165
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>gb|AY206372.1| Triticum aestivum ribulose-1,5-bisphosphate carboxylase activase
           precursor RNA, partial cds; nuclear gene for chloroplast
           product
          Length = 850

 Score =  280 bits (141), Expect = 3e-72
 Identities = 256/293 (87%), Gaps = 11/293 (3%)
 Strand = Plus / Minus

                                                                       
Query: 34  tgacaaatgataagtaggtgtattggtctttgccaaatgggtatactcaatatatttaga 93
           |||| ||||||||||||   |||| |||||| |||||| |||||||||||||| ||||  
Sbjct: 803 tgaccaatgataagtagtcctatttgtctttaccaaataggtatactcaatatcttta-- 746

                                                                       
Query: 94  gatatattaacaaaacatgcccagcaatcgcttggatgcgatgcgg-acttaggta---- 148
             |||||||||||||||||||||||||||||||||||||||||||| |||||||||    
Sbjct: 745 --tatattaacaaaacatgcccagcaatcgcttggatgcgatgcggtacttaggtacaaa 688

                                                                       
Query: 149 -ggtaaaacatcagatattaaaagtggcatgcttaaaaggtgtaaaggcagctgccgtcg 207
            | |||||||||||||||||||  ||||||||||||||||||||||||||||||||||||
Sbjct: 687 ggataaaacatcagatattaaat-tggcatgcttaaaaggtgtaaaggcagctgccgtcg 629

                                                                       
Query: 208 tnnttnnttgccgttgggtcgtagttcttggcattttggtcggngcaaccttccggcacg 267
           |   |  | |||||||||||| ||||||||||| | ||||||| ||| ||| |||| || 
Sbjct: 628 tcactcctcgccgttgggtcgaagttcttggcagtctggtcggtgcatcctgccggtaca 569

                                                                
Query: 268 gccaaagtaccttgctgtgctcctttacctcctcctatgcagcaagagatggt 320
           | |||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 568 ggcaaagtaccttgctgtgcccctttacctcctcctatgcagcaagagatggt 516
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>gb|BC029790.1| Homo sapiens, clone IMAGE:5192697, mRNA
          Length = 1643

 Score =  256 bits (129), Expect = 4e-65
 Identities = 207/232 (89%), Gaps = 7/232 (3%)
 Strand = Plus / Minus

                                                                        
Query: 95   atatattaacaaaacatgcccagcaatcgcttggatgcgatgcgg-acttaggta----- 148
            ||||||||||||||||||||||||||||||||||||||||||||| |||||||||     
Sbjct: 1596 atatattaacaaaacatgcccagcaatcgcttggatgcgatgcggtacttaggtacaaag 1537

                                                                        
Query: 149  ggtaaaacatcagatattaaaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgt 208
            | |||||||||||||||||||  |||||||||||||||||||||||||||||||||||||
Sbjct: 1536 gataaaacatcagatattaaat-tggcatgcttaaaaggtgtaaaggcagctgccgtcgt 1478

                                                                        
Query: 209  nnttnnttgccgttgggtcgtagttcttggcattttggtcggngcaaccttccggcacgg 268
               |  | |||||||||||| ||||||||||| | ||||||| ||| ||| |||| || |
Sbjct: 1477 cactcctcgccgttgggtcgaagttcttggcagtctggtcggtgcatcctgccggtacag 1418

                                                                
Query: 269  ccaaagtaccttgctgtgctcctttacctcctcctatgcagcaagagatggt 320
             |||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 1417 gcaaagtaccttgctgtgcccctttacctcctcctatgcagcaagagatggt 1366
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>gb|AY312574.1| Deschampsia antarctica Rubisco activase beta form precursor (RCA2)
            mRNA, complete cds; nuclear gene for chloroplast product
          Length = 1646

 Score =  182 bits (92), Expect = 5e-43
 Identities = 188/219 (85%), Gaps = 7/219 (3%)
 Strand = Plus / Minus

                                                                        
Query: 109  catgcccagcaatcgcttggatgcgatgcgga-cttaggtag-----gtaaaacatcaga 162
            ||||||||||| ||||||| |||||||||||  ||||||||      || ||||||||||
Sbjct: 1593 catgcccagcagtcgcttgtatgcgatgcggtgcttaggtacaaagagtgaaacatcaga 1534

                                                                        
Query: 163  -tattaaaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtnnttnnttgccgt 221
             || | |||||||||||||||||||||||||||||||||||||||||   |  | || ||
Sbjct: 1533 ataattaaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgcggt 1474

                                                                        
Query: 222  tgggtcgtagttcttggcattttggtcggngcaaccttccggcacggccaaagtaccttg 281
            ||||||| ||||||||||||   ||||||  |||||||||||||| | |||||| |||||
Sbjct: 1473 tgggtcgaagttcttggcatcccggtcggtacaaccttccggcacaggcaaagtgccttg 1414

                                                   
Query: 282  ctgtgctcctttacctcctcctatgcagcaagagatggt 320
             ||||||||||||||||||||||||||||||||||||||
Sbjct: 1413 ttgtgctcctttacctcctcctatgcagcaagagatggt 1375
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>gb|AY312573.1| Deschampsia antarctica Rubisco activase alpha form precursor (RCA1)
            mRNA, complete cds; nuclear gene for chloroplast product
          Length = 1616

 Score =  131 bits (66), Expect = 2e-27
 Identities = 112/129 (86%)
 Strand = Plus / Minus

                                                                        
Query: 168  aaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtnnttnnttgccgttgggtc 227
            |||||||||||||||||||||||||||||||||||||||||   |  | || ||||||||
Sbjct: 1489 aaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgcggttgggtc 1430

                                                                        
Query: 228  gtagttcttggcattttggtcggngcaaccttccggcacggccaaagtaccttgctgtgc 287
            | ||||||||||||   ||||||  |||||||||||||| | |||||| ||||| |||||
Sbjct: 1429 gaagttcttggcatcccggtcggtacaaccttccggcacaggcaaagtgccttgttgtgc 1370

                     
Query: 288  tcctttacc 296
            |||||||||
Sbjct: 1369 tcctttacc 1361
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>gb|AC137064.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0003C04
              map S10003, complete sequence
          Length = 119238

 Score = 93.7 bits (47), Expect = 3e-16
 Identities = 78/90 (86%)
 Strand = Plus / Plus

                                                                          
Query: 177    tgcttaaaaggtgtaaaggcagctgccgtcgtnnttnnttgccgttgggtcgtagttctt 236
              ||||||||||||||||||||||||||||||||   |  | |||||||||||| |||||||
Sbjct: 107158 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 107217

                                            
Query: 237    ggcattttggtcggngcaaccttccggcac 266
              ||||    |||||| |||||||||||||||
Sbjct: 107218 ggcaacagggtcggtgcaaccttccggcac 107247
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>gb|AC133008.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBb0026K20 map S10559, complete sequence
          Length = 115996

 Score = 93.7 bits (47), Expect = 3e-16
 Identities = 78/90 (86%)
 Strand = Plus / Plus

                                                                         
Query: 177   tgcttaaaaggtgtaaaggcagctgccgtcgtnnttnnttgccgttgggtcgtagttctt 236
             ||||||||||||||||||||||||||||||||   |  | |||||||||||| |||||||
Sbjct: 29039 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 29098

                                           
Query: 237   ggcattttggtcggngcaaccttccggcac 266
             ||||    |||||| |||||||||||||||
Sbjct: 29099 ggcaacagggtcggtgcaaccttccggcac 29128
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>gb|U74321.1|OSU74321 Oryza sativa ribulose-1,5-bisphosphate carboxylase/oxygenase activase
            (rca) mRNA, complete cds
          Length = 1675

 Score = 93.7 bits (47), Expect = 3e-16
 Identities = 78/90 (86%)
 Strand = Plus / Minus

                                                                        
Query: 177  tgcttaaaaggtgtaaaggcagctgccgtcgtnnttnnttgccgttgggtcgtagttctt 236
            ||||||||||||||||||||||||||||||||   |  | |||||||||||| |||||||
Sbjct: 1520 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1461

                                          
Query: 237  ggcattttggtcggngcaaccttccggcac 266
            ||||    |||||| |||||||||||||||
Sbjct: 1460 ggcaacagggtcggtgcaaccttccggcac 1431
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>dbj|AB110180.1| Oryza sativa (japonica cultivar-group) mRNA for ribulose-bisphosphate
            carboxylase activase large isoform precursor protein,
            complete cds, clone: 13YPR038
          Length = 1558

 Score = 93.7 bits (47), Expect = 3e-16
 Identities = 78/90 (86%)
 Strand = Plus / Minus

                                                                        
Query: 177  tgcttaaaaggtgtaaaggcagctgccgtcgtnnttnnttgccgttgggtcgtagttctt 236
            ||||||||||||||||||||||||||||||||   |  | |||||||||||| |||||||
Sbjct: 1430 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1371

                                          
Query: 237  ggcattttggtcggngcaaccttccggcac 266
            ||||    |||||| |||||||||||||||
Sbjct: 1370 ggcaacagggtcggtgcaaccttccggcac 1341
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 93.7 bits (47), Expect = 3e-16
 Identities = 78/90 (86%)
 Strand = Plus / Plus

                                                                            
Query: 177      tgcttaaaaggtgtaaaggcagctgccgtcgtnnttnnttgccgttgggtcgtagttctt 236
                ||||||||||||||||||||||||||||||||   |  | |||||||||||| |||||||
Sbjct: 28302301 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 28302360

                                              
Query: 237      ggcattttggtcggngcaaccttccggcac 266
                ||||    |||||| |||||||||||||||
Sbjct: 28302361 ggcaacagggtcggtgcaaccttccggcac 28302390
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>dbj|AK104332.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-032-F04, full
            insert sequence
          Length = 1682

 Score = 93.7 bits (47), Expect = 3e-16
 Identities = 78/90 (86%)
 Strand = Plus / Minus

                                                                        
Query: 177  tgcttaaaaggtgtaaaggcagctgccgtcgtnnttnnttgccgttgggtcgtagttctt 236
            ||||||||||||||||||||||||||||||||   |  | |||||||||||| |||||||
Sbjct: 1514 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1455

                                          
Query: 237  ggcattttggtcggngcaaccttccggcac 266
            ||||    |||||| |||||||||||||||
Sbjct: 1454 ggcaacagggtcggtgcaaccttccggcac 1425
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>dbj|AK064986.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001C24, full
            insert sequence
          Length = 1680

 Score = 93.7 bits (47), Expect = 3e-16
 Identities = 78/90 (86%)
 Strand = Plus / Minus

                                                                        
Query: 177  tgcttaaaaggtgtaaaggcagctgccgtcgtnnttnnttgccgttgggtcgtagttctt 236
            ||||||||||||||||||||||||||||||||   |  | |||||||||||| |||||||
Sbjct: 1552 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1493

                                          
Query: 237  ggcattttggtcggngcaaccttccggcac 266
            ||||    |||||| |||||||||||||||
Sbjct: 1492 ggcaacagggtcggtgcaaccttccggcac 1463
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>dbj|AK060847.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-E04, full
            insert sequence
          Length = 1691

 Score = 93.7 bits (47), Expect = 3e-16
 Identities = 78/90 (86%)
 Strand = Plus / Minus

                                                                        
Query: 177  tgcttaaaaggtgtaaaggcagctgccgtcgtnnttnnttgccgttgggtcgtagttctt 236
            ||||||||||||||||||||||||||||||||   |  | |||||||||||| |||||||
Sbjct: 1551 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1492

                                          
Query: 237  ggcattttggtcggngcaaccttccggcac 266
            ||||    |||||| |||||||||||||||
Sbjct: 1491 ggcaacagggtcggtgcaaccttccggcac 1462
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>dbj|AK060841.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-D05, full
            insert sequence
          Length = 1470

 Score = 93.7 bits (47), Expect = 3e-16
 Identities = 78/90 (86%)
 Strand = Plus / Minus

                                                                        
Query: 177  tgcttaaaaggtgtaaaggcagctgccgtcgtnnttnnttgccgttgggtcgtagttctt 236
            ||||||||||||||||||||||||||||||||   |  | |||||||||||| |||||||
Sbjct: 1335 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1276

                                          
Query: 237  ggcattttggtcggngcaaccttccggcac 266
            ||||    |||||| |||||||||||||||
Sbjct: 1275 ggcaacagggtcggtgcaaccttccggcac 1246
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 93.7 bits (47), Expect = 3e-16
 Identities = 78/90 (86%)
 Strand = Plus / Plus

                                                                            
Query: 177      tgcttaaaaggtgtaaaggcagctgccgtcgtnnttnnttgccgttgggtcgtagttctt 236
                ||||||||||||||||||||||||||||||||   |  | |||||||||||| |||||||
Sbjct: 28284750 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 28284809

                                              
Query: 237      ggcattttggtcggngcaaccttccggcac 266
                ||||    |||||| |||||||||||||||
Sbjct: 28284810 ggcaacagggtcggtgcaaccttccggcac 28284839
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>dbj|AB034748.1| Oryza sativa OsrcaA2 mRNA for RuBisCO activase small isoform
            precursor, complete cds
          Length = 1706

 Score = 93.7 bits (47), Expect = 3e-16
 Identities = 78/90 (86%)
 Strand = Plus / Minus

                                                                        
Query: 177  tgcttaaaaggtgtaaaggcagctgccgtcgtnnttnnttgccgttgggtcgtagttctt 236
            ||||||||||||||||||||||||||||||||   |  | |||||||||||| |||||||
Sbjct: 1556 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1497

                                          
Query: 237  ggcattttggtcggngcaaccttccggcac 266
            ||||    |||||| |||||||||||||||
Sbjct: 1496 ggcaacagggtcggtgcaaccttccggcac 1467
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>dbj|AB034698.1| Oryza sativa OsrcaA1 mRNA for RuBisCO activase large isoform
            precursor, complete cds
          Length = 1623

 Score = 93.7 bits (47), Expect = 3e-16
 Identities = 78/90 (86%)
 Strand = Plus / Minus

                                                                        
Query: 177  tgcttaaaaggtgtaaaggcagctgccgtcgtnnttnnttgccgttgggtcgtagttctt 236
            ||||||||||||||||||||||||||||||||   |  | |||||||||||| |||||||
Sbjct: 1465 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1406

                                          
Query: 237  ggcattttggtcggngcaaccttccggcac 266
            ||||    |||||| |||||||||||||||
Sbjct: 1405 ggcaacagggtcggtgcaaccttccggcac 1376
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>gb|DQ359157.1| Oryza sativa (japonica cultivar-group) chloroplast RuBisCO small
           isoform precursor, mRNA, partial cds; nuclear gene for
           chloroplast product
          Length = 93

 Score = 81.8 bits (41), Expect = 1e-12
 Identities = 72/84 (85%)
 Strand = Plus / Minus

                                                                       
Query: 183 aaaggtgtaaaggcagctgccgtcgtnnttnnttgccgttgggtcgtagttcttggcatt 242
           ||||||||||||||||||||||||||   |  | |||||||||||| |||||||||||  
Sbjct: 93  aaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttcttggcaac 34

                                   
Query: 243 ttggtcggngcaaccttccggcac 266
             |||||| |||||||||||||||
Sbjct: 33  agggtcggtgcaaccttccggcac 10
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>dbj|AK119513.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-200-F01, full
            insert sequence
          Length = 1721

 Score = 77.8 bits (39), Expect = 2e-11
 Identities = 77/90 (85%), Gaps = 1/90 (1%)
 Strand = Plus / Minus

                                                                        
Query: 177  tgcttaaaaggtgtaaaggcagctgccgtcgtnnttnnttgccgttgggtcgtagttctt 236
            ||||||||||||||||||||||||||||||||   |  | |||||||||||| | |||||
Sbjct: 1562 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcg-aattctt 1504

                                          
Query: 237  ggcattttggtcggngcaaccttccggcac 266
            ||||    |||||| |||||||||||||||
Sbjct: 1503 ggcaacagggtcggtgcaaccttccggcac 1474
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>gb|DQ023668.1| Oryza sativa (indica cultivar-group) cultivar Tetep genomic
           sequence
          Length = 234

 Score = 69.9 bits (35), Expect = 5e-09
 Identities = 75/90 (83%)
 Strand = Plus / Minus

                                                                       
Query: 177 tgcttaaaaggtgtaaaggcagctgccgtcgtnnttnnttgccgttgggtcgtagttctt 236
           |||||||||| | |||||||||||||||||||   |  | |||||||||||| |||||||
Sbjct: 135 tgcttaaaagttttaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 76

                                         
Query: 237 ggcattttggtcggngcaaccttccggcac 266
           ||||    ||||||  ||||||||||||||
Sbjct: 75  ggcaacagggtcgggtcaaccttccggcac 46
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
               sequence
          Length = 22696651

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 73/90 (81%)
 Strand = Plus / Minus

                                                                           
Query: 177     tgcttaaaaggtgtaaaggcagctgccgtcgtnnttnnttgccgttgggtcgtagttctt 236
               |||||| ||||||||||||||| ||| |||||   |  | |||||||||||  |||| ||
Sbjct: 4541413 tgcttagaaggtgtaaaggcagatgctgtcgttgctcatcgccgttgggtcaaagttgtt 4541354

                                             
Query: 237     ggcattttggtcggngcaaccttccggcac 266
               ||||    |||||| |||||||||||||||
Sbjct: 4541353 ggcaacagggtcggtgcaaccttccggcac 4541324
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>dbj|AP005592.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0638A12
          Length = 140731

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 73/90 (81%)
 Strand = Plus / Minus

                                                                         
Query: 177   tgcttaaaaggtgtaaaggcagctgccgtcgtnnttnnttgccgttgggtcgtagttctt 236
             |||||| ||||||||||||||| ||| |||||   |  | |||||||||||  |||| ||
Sbjct: 84787 tgcttagaaggtgtaaaggcagatgctgtcgttgctcatcgccgttgggtcaaagttgtt 84728

                                           
Query: 237   ggcattttggtcggngcaaccttccggcac 266
             ||||    |||||| |||||||||||||||
Sbjct: 84727 ggcaacagggtcggtgcaaccttccggcac 84698
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>emb|BX000451.4| Zebrafish DNA sequence from clone CH211-30E10, complete sequence
          Length = 153155

 Score = 44.1 bits (22), Expect = 0.27
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 82    aatatatttagagatatattaa 103
             ||||||||||||||||||||||
Sbjct: 67942 aatatatttagagatatattaa 67963
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>gb|AC166748.3| Mus musculus chromosome 19, clone RP23-345M21, complete sequence
          Length = 178257

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 39     aatgataagtaggtgtattgg 59
              |||||||||||||||||||||
Sbjct: 109370 aatgataagtaggtgtattgg 109390
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>gb|AC138278.9| Mus musculus chromosome 8, clone RP23-378E4, complete sequence
          Length = 177245

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 84    tatatttagagatatattaac 104
             |||||||||||||||||||||
Sbjct: 12315 tatatttagagatatattaac 12335
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>emb|BX119904.4| Human DNA sequence from clone RP11-232D9 on chromosome X Contains two
              pseudogenes similar to part of solute carrier family 6
              (neurotransmitter transporter) member 14 (SLC6A14) and a
              novel gene, complete sequence
          Length = 178704

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 16     gtaatgaatactgagcagtga 36
              |||||||||||||||||||||
Sbjct: 136307 gtaatgaatactgagcagtga 136327
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>gb|AC161354.2| Mus musculus chromosome 8, clone RP23-373C4, complete sequence
          Length = 98660

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 84    tatatttagagatatattaac 104
             |||||||||||||||||||||
Sbjct: 66387 tatatttagagatatattaac 66367
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>gb|AC152426.10| Mus musculus chromosome 19, clone RP23-216E17, complete sequence
          Length = 217738

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 39     aatgataagtaggtgtattgg 59
              |||||||||||||||||||||
Sbjct: 149522 aatgataagtaggtgtattgg 149502
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>gb|AC117829.7| Mus musculus chromosome 19, clone RP24-95D15, complete sequence
          Length = 168084

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 39     aatgataagtaggtgtattgg 59
              |||||||||||||||||||||
Sbjct: 131097 aatgataagtaggtgtattgg 131077
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>dbj|AK040781.1| Mus musculus adult male aorta and vein cDNA, RIKEN full-length
            enriched library, clone:A530024M06 product:Hypothetical
            protein FLJ33092 (UST1r) homolog [Homo sapiens], full
            insert sequence
          Length = 2605

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 39   aatgataagtaggtgtattgg 59
            |||||||||||||||||||||
Sbjct: 2351 aatgataagtaggtgtattgg 2331
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 153     aaacatcagatattaaaagtg 173
               |||||||||||||||||||||
Sbjct: 3040440 aaacatcagatattaaaagtg 3040420
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 153     aaacatcagatattaaaagtg 173
               |||||||||||||||||||||
Sbjct: 3040385 aaacatcagatattaaaagtg 3040365
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>emb|AL731748.3|CNS08C7X Oryza sativa chromosome 12, . BAC OSJNBa0095K18 of library OSJNBa from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 159711

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 153    aaacatcagatattaaaagtg 173
              |||||||||||||||||||||
Sbjct: 114403 aaacatcagatattaaaagtg 114423
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>gb|AC164586.7| Mus musculus chromosome 8, clone RP24-258B3, complete sequence
          Length = 105452

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 84   tatatttagagatatattaac 104
            |||||||||||||||||||||
Sbjct: 6217 tatatttagagatatattaac 6197
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>gb|AC003067.59| Mus musculus Chromosome 16 BAC Clone tbx3 Syntenic To Homo sapiens
             22q11.2 DGCR Region, complete sequence
          Length = 262062

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 289   cctttacctcctcctatgca 308
             ||||||||||||||||||||
Sbjct: 46359 cctttacctcctcctatgca 46378
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>gb|AF414359.1|AF414356S4 Mus musculus thioredoxin reductase (Trxr2) gene, exons 12 through 18,
            and complete cds
          Length = 16432

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 289  cctttacctcctcctatgca 308
            ||||||||||||||||||||
Sbjct: 1637 cctttacctcctcctatgca 1656
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>gb|AC133488.30| Mus musculus strain C57BL/6J clone rp23-432e14, complete sequence
          Length = 202128

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 289   cctttacctcctcctatgca 308
             ||||||||||||||||||||
Sbjct: 32945 cctttacctcctcctatgca 32964
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>gb|AC019210.7| Homo sapiens BAC clone RP11-449G3 from 7, complete sequence
          Length = 177402

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 158    tcagatattaaaagtggcat 177
              ||||||||||||||||||||
Sbjct: 141058 tcagatattaaaagtggcat 141077
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>gb|AC011228.9| Homo sapiens BAC clone GS1-18A18 from 7, complete sequence
          Length = 163782

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 158    tcagatattaaaagtggcat 177
              ||||||||||||||||||||
Sbjct: 142564 tcagatattaaaagtggcat 142583
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>gb|AC140953.1| Pan troglodytes BAC clone RP43-37K18 from 7, complete sequence
          Length = 204813

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 158   tcagatattaaaagtggcat 177
             ||||||||||||||||||||
Sbjct: 95930 tcagatattaaaagtggcat 95911
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>gb|AC139338.3| Homo sapiens 3 BAC RP11-449O23 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 166149

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 82    aatatatttagagatatatt 101
             ||||||||||||||||||||
Sbjct: 30454 aatatatttagagatatatt 30473
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>dbj|AP007170.1| Aspergillus oryzae RIB40 genomic DNA, SC138
          Length = 504369

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 106   aaacatgcccagcaatcgcttgga 129
             |||||||||||||||||| |||||
Sbjct: 41692 aaacatgcccagcaatcgattgga 41715
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>gb|AC003066.18| Mus musculus Chromosome 16 BAC Clone tbx1 Syntenic To Homo sapiens
             22q11.2 DGCR Region, complete sequence
          Length = 176974

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 289   cctttacctcctcctatgca 308
             ||||||||||||||||||||
Sbjct: 34662 cctttacctcctcctatgca 34681
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>emb|BX000985.18| Zebrafish DNA sequence from clone DKEY-13M3 in linkage group 15,
             complete sequence
          Length = 134752

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 172   tggcatgcttaaaaggtgta 191
             ||||||||||||||||||||
Sbjct: 78235 tggcatgcttaaaaggtgta 78254
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>ref|XM_222660.3| PREDICTED: Rattus norvegicus leiomodin 1 (smooth muscle)
           (predicted) (Lmod1_predicted), mRNA
          Length = 1920

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 278 cttgctgtgctcctttacctcctc 301
           ||||||| ||||||||||||||||
Sbjct: 648 cttgctgggctcctttacctcctc 625
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>gb|AC133487.14| Mus musculus strain C57BL/6J clone rp23-285e22, complete sequence
          Length = 158595

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 289   cctttacctcctcctatgca 308
             ||||||||||||||||||||
Sbjct: 27755 cctttacctcctcctatgca 27736
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>gb|AC007625.2|AC007625 Genomic sequence of Homo sapiens clone 2314F2 from chromosome 18,
             complete sequence
          Length = 174701

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 82    aatatatttagagatatatt 101
             ||||||||||||||||||||
Sbjct: 62504 aatatatttagagatatatt 62485
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>gb|AC091764.35| Mus musculus strain C57BL/6J chromosome 10 clone rp23-202b12, complete
              sequence
          Length = 230848

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 157    atcagatattaaaagtggcatgct 180
              ||||||||||||||||| ||||||
Sbjct: 127875 atcagatattaaaagtgccatgct 127852


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,455,593
Number of Sequences: 3902068
Number of extensions: 2455593
Number of successful extensions: 46848
Number of sequences better than 10.0: 50
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 46646
Number of HSP's gapped (non-prelim): 160
length of query: 322
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 300
effective length of database: 17,147,199,772
effective search space: 5144159931600
effective search space used: 5144159931600
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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