ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags25d13
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1HAK17_ORYSA (Q67UC7) Probable potassium transporter 17 (OsHAK17) 29 3.7
2HIS2_PROMA (Q7VD07) Histidine biosynthesis bifunctional protein ... 28 8.3

>HAK17_ORYSA (Q67UC7) Probable potassium transporter 17 (OsHAK17)|
          Length = 707

 Score = 28.9 bits (63), Expect = 3.7
 Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
 Frame = +3

Query: 6   TGXTNFIF---LGXCPFIT*IISLHHLQDIQPGNLRAHPPIYKLHYYQKHSLLNYALL 170
           T   +F+F   +    F T II L+ +    PG  +A  P Y +H++ ++    + LL
Sbjct: 220 TSKVSFLFSPIMAAWTFTTPIIGLYSIVHYYPGIFKAISPYYIVHFFLRNKRQGWQLL 277



to top

>HIS2_PROMA (Q7VD07) Histidine biosynthesis bifunctional protein hisIE|
           [Includes: Phosphoribosyl-AMP cyclohydrolase (EC
           3.5.4.19) (PRA-CH); Phosphoribosyl-ATP pyrophosphatase
           (EC 3.6.1.31) (PRA-PH)]
          Length = 226

 Score = 27.7 bits (60), Expect = 8.3
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = -1

Query: 180 EANEVTHSLAKNAFDNNVACKWEDEPSDFLVECPAND 70
           + N  T+SL K+  DN +  K  +E S+F++ C  ND
Sbjct: 147 QKNSYTNSLLKDG-DNKILKKIGEEGSEFVMACKDND 182


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,489,972
Number of Sequences: 219361
Number of extensions: 452686
Number of successful extensions: 1091
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1084
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1091
length of database: 80,573,946
effective HSP length: 52
effective length of database: 69,167,174
effective search space used: 1660012176
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top