ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags25d13
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|BX511123.10| Zebrafish DNA sequence from clone DKEY-201I6 in... 42 0.75
2gb|AC009407.8| Homo sapiens BAC clone RP11-223I10 from 2, comple... 42 0.75
3gb|AC102197.7| Mus musculus chromosome 1, clone RP24-466J11, com... 40 3.0
4emb|BX649528.15| Zebrafish DNA sequence from clone DKEY-19F4 in ... 40 3.0
5gb|AC162880.4| Mus musculus chromosome 1, clone RP24-275N11, com... 40 3.0
6gb|AC021915.11| Homo sapiens chromosome 8, clone RP11-26M5, comp... 40 3.0
7gb|AC104464.2| Homo sapiens chromosome 1 clone RP5-994L8, comple... 40 3.0
8gb|M16575.1|EIAVCG Equine infectious anemia virus proviral DNA, ... 40 3.0

>emb|BX511123.10| Zebrafish DNA sequence from clone DKEY-201I6 in linkage group 16,
              complete sequence
          Length = 159464

 Score = 42.1 bits (21), Expect = 0.75
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 94     gaaatctgagggctcatcctc 114
              |||||||||||||||||||||
Sbjct: 135620 gaaatctgagggctcatcctc 135640



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>gb|AC009407.8| Homo sapiens BAC clone RP11-223I10 from 2, complete sequence
          Length = 202568

 Score = 42.1 bits (21), Expect = 0.75
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 111    cctcccatttacaagctacat 131
              |||||||||||||||||||||
Sbjct: 141541 cctcccatttacaagctacat 141561



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>gb|AC102197.7| Mus musculus chromosome 1, clone RP24-466J11, complete sequence
          Length = 150253

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 86     tcaaccaggaaatctgaggg 105
              ||||||||||||||||||||
Sbjct: 142310 tcaaccaggaaatctgaggg 142291



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>emb|BX649528.15| Zebrafish DNA sequence from clone DKEY-19F4 in linkage group 5,
             complete sequence
          Length = 205281

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 98    tctgagggctcatcctccca 117
             ||||||||||||||||||||
Sbjct: 98599 tctgagggctcatcctccca 98580



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>gb|AC162880.4| Mus musculus chromosome 1, clone RP24-275N11, complete sequence
          Length = 164201

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 86    tcaaccaggaaatctgaggg 105
             ||||||||||||||||||||
Sbjct: 29697 tcaaccaggaaatctgaggg 29678



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>gb|AC021915.11| Homo sapiens chromosome 8, clone RP11-26M5, complete sequence
          Length = 183101

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 119    ttacaagctacattattatcaaaa 142
              ||||||||||||||||| ||||||
Sbjct: 120949 ttacaagctacattattctcaaaa 120972



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>gb|AC104464.2| Homo sapiens chromosome 1 clone RP5-994L8, complete sequence
          Length = 153772

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 81    gacattcaaccaggaaatct 100
             ||||||||||||||||||||
Sbjct: 59060 gacattcaaccaggaaatct 59079



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>gb|M16575.1|EIAVCG Equine infectious anemia virus proviral DNA, complete genome
          Length = 8407

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 120  tacaagctacattattatcaaaag 143
            |||| |||||||||||||||||||
Sbjct: 4557 tacatgctacattattatcaaaag 4580


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,678,325
Number of Sequences: 3902068
Number of extensions: 1678325
Number of successful extensions: 35318
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 35300
Number of HSP's gapped (non-prelim): 18
length of query: 231
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 209
effective length of database: 17,147,199,772
effective search space: 3583764752348
effective search space used: 3583764752348
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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