ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags25d09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1DUOX_DROME (Q9VQH2) Dual oxidase (EC 1.6.3.1) (EC 1.11.1.-) 32 1.7
2PNT1_DROME (P51022) ETS-like protein pointed, isoform P1 (D-ETS-2) 30 5.0
3ZCHC6_MOUSE (Q5BLK4) Zinc finger CCHC domain-containing protein 6 29 8.5

>DUOX_DROME (Q9VQH2) Dual oxidase (EC 1.6.3.1) (EC 1.11.1.-)|
          Length = 1475

 Score = 31.6 bits (70), Expect = 1.7
 Identities = 21/54 (38%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
 Frame = +2

Query: 320 RCFSRHHIDVAHVVLQRLNH---RSLLLIPVEAAQKLALALARYGDRRVVVLEL 472
           R FS  HIDV  V     NH   +  +L+ V +   L L L  YG RR  V +L
Sbjct: 653 RTFSLKHIDVVSVEESATNHIKKKPYILLRVPSDHDLVLELESYGARRKFVKKL 706



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>PNT1_DROME (P51022) ETS-like protein pointed, isoform P1 (D-ETS-2)|
          Length = 623

 Score = 30.0 bits (66), Expect = 5.0
 Identities = 17/86 (19%), Positives = 32/86 (37%)
 Frame = -1

Query: 538 QKSKRESSHDRKRRAHGDPNSGKLKHHNAPIAISGXXXXXXXXXLNRDQKEAAMVKALEN 359
           Q+ ++ S   ++++ HG  +S +L HH      +G          +     +A  +   N
Sbjct: 120 QQQQQHSHQSQQQQQHGYGSSAQLPHHRLSGGSTGSTTTTSSGSSSSGSSSSASSQGFAN 179

Query: 358 NMGDVDMVSAEASSETAKDKSQMKFN 281
                + +    SS TA       FN
Sbjct: 180 GSATANNLVGALSSSTAASLGLGYFN 205



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>ZCHC6_MOUSE (Q5BLK4) Zinc finger CCHC domain-containing protein 6|
          Length = 1491

 Score = 29.3 bits (64), Expect = 8.5
 Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
 Frame = -1

Query: 394 QKEAAMVKALENNMGDVDMVSAEASSETAKDKSQ--MKFNVKKNSRIQI 254
           +K++ + +  +N+ GD      EA  ETA  K Q  + FN+K    + +
Sbjct: 503 EKDSVVWEYTDNSTGDTSSAKEEAPKETAAKKGQVPLTFNIKHQPSVPV 551


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,932,360
Number of Sequences: 219361
Number of extensions: 898882
Number of successful extensions: 2537
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2483
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2537
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4929664480
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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