>POLG_RTSVT (Q91PP5) Genome polyprotein [Contains: Putative leader protein;|
           Coat protein 1 (25 kDa protein) (CP-1); Coat protein 2
           (26 kDa protein) (CP-2); Coat protein 3 (35 kDa protein)
           (CP-3); Putative helicase (EC 3.6.1.-) (Putative
           NTP-binding protei
          Length = 3471

 Score = 29.6 bits (65), Expect = 2.0
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +3

Query: 129 GVRCLHQKRMLGKSTLYRNYC 191
           GVRC HQ  + GK+ ++ NYC
Sbjct: 24  GVRCAHQGWVSGKAVVFCNYC 44

>POLG_RTSVA (Q83034) Genome polyprotein [Contains: Putative leader protein;|
           Coat protein 1 (25 kDa protein) (CP-1); Coat protein 2
           (26 kDa protein) (CP-2); Coat protein 3 (35 kDa protein)
           (CP-3); Putative helicase (EC 3.6.1.-) (Putative
           NTP-binding protei
          Length = 3473

 Score = 29.6 bits (65), Expect = 2.0
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +3

Query: 129 GVRCLHQKRMLGKSTLYRNYC 191
           GVRC HQ  + GK+ ++ NYC
Sbjct: 24  GVRCAHQGWVSGKAVVFCNYC 44

>CVRA_PSEAE (Q9HUE8) Cell volume regulation protein A homolog|
          Length = 580

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 23/72 (31%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
 Frame = -3

Query: 237 ALXGSGRTFIFLTLEGNNFCRGWIFPTFVFGGGIELQRL-S*VGGSVLKTFTIIGLSLSS 61
           AL G G  ++ L L       G ++P  V  GG+ +  L + VGGS +    + GL    
Sbjct: 199 ALLGLGGGWLLLQLINRMHLAGGLYPLLVISGGLLVFALANAVGGSGILAIYLCGL---- 254

Query: 60  CMCPESLLGNXP 25
                 LLGN P
Sbjct: 255 ------LLGNRP 260

>LEPA_AGRT5 (Q8UIQ2) GTP-binding protein lepA|
          Length = 608

 Score = 28.1 bits (61), Expect = 5.9
 Identities = 11/29 (37%), Positives = 20/29 (68%)
 Frame = +2

Query: 104 LPPTYDNLWSSMPPPKTNVGKIHPLQKLL 190
           +P   + + + +PPPK++VG+  PL+ LL
Sbjct: 178 IPDVLEAIVNRLPPPKSDVGENGPLKALL 206

>PKNX1_HUMAN (P55347) Homeobox protein PKNOX1 (PBX/knotted homeobox 1) (Homeobox|
           protein PREP-1)
          Length = 435

 Score = 27.7 bits (60), Expect = 7.7
 Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
 Frame = +2

Query: 65  LKLNPMIVNVLRT-LPPTYDNLWSSMPPPKTNVGKIHPLQKLLPSNVKKIKVRPDP 229
           L++N   +N  R  L P  D+  S  P  K    +  P+Q+  P ++     +P P
Sbjct: 303 LQVNNWFINARRRILQPMLDSSCSETPKTKKKTAQNRPVQRFWPDSIASGVAQPPP 358

>KIF1A_MOUSE (P33173) Kinesin-like protein KIF1A (Axonal transporter of synaptic|
            vesicles)
          Length = 1695

 Score = 27.7 bits (60), Expect = 7.7
 Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 5/63 (7%)
 Frame = +2

Query: 56   IHELKLNPMIVNVL-----RTLPPTYDNLWSSMPPPKTNVGKIHPLQKLLPSNVKKIKVR 220
            I  +K  P++  V         PP   ++ S + P + +  ++ PL K +P+       R
Sbjct: 1063 IEYIKSQPIVFEVFGHYQQHPFPPLCKDVLSPLRPSRRHFPRVMPLSKPVPATKLSTMTR 1122

Query: 221  PDP 229
            P P
Sbjct: 1123 PSP 1125


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,411,669
Number of Sequences: 219361
Number of extensions: 917695
Number of successful extensions: 2756
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2721
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2756
length of database: 80,573,946
effective HSP length: 77
effective length of database: 63,683,149
effective search space used: 1528395576
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)