ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags24o05
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_467495.1| Oryza sativa (japonica cultivar-group), mRNA 48 0.016
2ref|XM_507526.1| PREDICTED Oryza sativa (japonica cultivar-group... 48 0.016
3ref|XM_506941.2| PREDICTED Oryza sativa (japonica cultivar-group... 48 0.016
4dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 48 0.016
5dbj|AP004098.3| Oryza sativa (japonica cultivar-group) genomic D... 48 0.016
6dbj|AP004040.3| Oryza sativa (japonica cultivar-group) genomic D... 48 0.016
7dbj|AK119207.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.016
8dbj|AK100143.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.016
9dbj|AK073448.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.016
10dbj|D12637.1|RICATADPT Oryza sativa (japonica cultivar-group) mR... 48 0.016
11gb|BT016455.1| Zea mays clone Contig288 mRNA sequence 44 0.26
12emb|X59086.1|ZMANT2MU Z.mays MANT2 mRNA for adenine nucleotide t... 44 0.26
13emb|X15712.1|ZMANTG2 Maize ANT-G2 gene for adenine nucleotide tr... 44 0.26
14gb|AC113991.4| Mus musculus chromosome 3, clone RP24-138E17, com... 42 1.0
15gb|AC115049.6| Mus musculus chromosome 3, clone RP24-332L11, com... 42 1.0
16emb|AJ620477.1| Angiococcus disciformis partial ORF16, ORF15, OR... 42 1.0
17gb|AC134827.4| Mus musculus BAC clone RP24-470E5 from 5, complet... 40 4.0 
>ref|XM_467495.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1577

 Score = 48.1 bits (24), Expect = 0.016
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                        
Query: 63   aactcaaactcaaccctatgatagtaaa 90
            |||||||||||||||||||||| |||||
Sbjct: 1491 aactcaaactcaaccctatgatggtaaa 1464



 Score = 42.1 bits (21), Expect = 1.0
 Identities = 43/49 (87%), Gaps = 1/49 (2%)
 Strand = Plus / Minus

                                                             
Query: 258  cttgttcgtcatcattt-cttcccctctaggcaccgcctgagccgtact 305
            ||||||||||||||||| || ||  | ||||||||||| ||||||||||
Sbjct: 1299 cttgttcgtcatcattttctgccagtttaggcaccgcccgagccgtact 1251
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>ref|XM_507526.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ2056_H01.33 mRNA
          Length = 1578

 Score = 48.1 bits (24), Expect = 0.016
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                        
Query: 63   aactcaaactcaaccctatgatagtaaa 90
            |||||||||||||||||||||| |||||
Sbjct: 1492 aactcaaactcaaccctatgatggtaaa 1465



 Score = 42.1 bits (21), Expect = 1.0
 Identities = 43/49 (87%), Gaps = 1/49 (2%)
 Strand = Plus / Minus

                                                             
Query: 258  cttgttcgtcatcattt-cttcccctctaggcaccgcctgagccgtact 305
            ||||||||||||||||| || ||  | ||||||||||| ||||||||||
Sbjct: 1300 cttgttcgtcatcattttctgccagtttaggcaccgcccgagccgtact 1252
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>ref|XM_506941.2| PREDICTED Oryza sativa (japonica cultivar-group), OJ2056_H01.33 mRNA
          Length = 1619

 Score = 48.1 bits (24), Expect = 0.016
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                        
Query: 63   aactcaaactcaaccctatgatagtaaa 90
            |||||||||||||||||||||| |||||
Sbjct: 1533 aactcaaactcaaccctatgatggtaaa 1506



 Score = 42.1 bits (21), Expect = 1.0
 Identities = 43/49 (87%), Gaps = 1/49 (2%)
 Strand = Plus / Minus

                                                             
Query: 258  cttgttcgtcatcattt-cttcccctctaggcaccgcctgagccgtact 305
            ||||||||||||||||| || ||  | ||||||||||| ||||||||||
Sbjct: 1341 cttgttcgtcatcattttctgccagtttaggcaccgcccgagccgtact 1293
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 48.1 bits (24), Expect = 0.016
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                            
Query: 63       aactcaaactcaaccctatgatagtaaa 90
                |||||||||||||||||||||| |||||
Sbjct: 29843527 aactcaaactcaaccctatgatggtaaa 29843500



 Score = 42.1 bits (21), Expect = 1.0
 Identities = 43/49 (87%), Gaps = 1/49 (2%)
 Strand = Plus / Minus

                                                                 
Query: 258      cttgttcgtcatcattt-cttcccctctaggcaccgcctgagccgtact 305
                ||||||||||||||||| || ||  | ||||||||||| ||||||||||
Sbjct: 29843335 cttgttcgtcatcattttctgccagtttaggcaccgcccgagccgtact 29843287
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>dbj|AP004098.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ2056_H01
          Length = 123428

 Score = 48.1 bits (24), Expect = 0.016
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                         
Query: 63    aactcaaactcaaccctatgatagtaaa 90
             |||||||||||||||||||||| |||||
Sbjct: 99872 aactcaaactcaaccctatgatggtaaa 99845



 Score = 42.1 bits (21), Expect = 1.0
 Identities = 43/49 (87%), Gaps = 1/49 (2%)
 Strand = Plus / Minus

                                                              
Query: 258   cttgttcgtcatcattt-cttcccctctaggcaccgcctgagccgtact 305
             ||||||||||||||||| || ||  | ||||||||||| ||||||||||
Sbjct: 99680 cttgttcgtcatcattttctgccagtttaggcaccgcccgagccgtact 99632
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>dbj|AP004040.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2,
           BAC clone:OJ1008_D06
          Length = 112768

 Score = 48.1 bits (24), Expect = 0.016
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                       
Query: 63  aactcaaactcaaccctatgatagtaaa 90
           |||||||||||||||||||||| |||||
Sbjct: 492 aactcaaactcaaccctatgatggtaaa 465



 Score = 42.1 bits (21), Expect = 1.0
 Identities = 43/49 (87%), Gaps = 1/49 (2%)
 Strand = Plus / Minus

                                                            
Query: 258 cttgttcgtcatcattt-cttcccctctaggcaccgcctgagccgtact 305
           ||||||||||||||||| || ||  | ||||||||||| ||||||||||
Sbjct: 300 cttgttcgtcatcattttctgccagtttaggcaccgcccgagccgtact 252
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>dbj|AK119207.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-041-E01, full
            insert sequence
          Length = 1578

 Score = 48.1 bits (24), Expect = 0.016
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                        
Query: 63   aactcaaactcaaccctatgatagtaaa 90
            |||||||||||||||||||||| |||||
Sbjct: 1492 aactcaaactcaaccctatgatggtaaa 1465



 Score = 42.1 bits (21), Expect = 1.0
 Identities = 43/49 (87%), Gaps = 1/49 (2%)
 Strand = Plus / Minus

                                                             
Query: 258  cttgttcgtcatcattt-cttcccctctaggcaccgcctgagccgtact 305
            ||||||||||||||||| || ||  | ||||||||||| ||||||||||
Sbjct: 1300 cttgttcgtcatcattttctgccagtttaggcaccgcccgagccgtact 1252
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>dbj|AK100143.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023011P12, full
            insert sequence
          Length = 1577

 Score = 48.1 bits (24), Expect = 0.016
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                        
Query: 63   aactcaaactcaaccctatgatagtaaa 90
            |||||||||||||||||||||| |||||
Sbjct: 1491 aactcaaactcaaccctatgatggtaaa 1464



 Score = 42.1 bits (21), Expect = 1.0
 Identities = 43/49 (87%), Gaps = 1/49 (2%)
 Strand = Plus / Minus

                                                             
Query: 258  cttgttcgtcatcattt-cttcccctctaggcaccgcctgagccgtact 305
            ||||||||||||||||| || ||  | ||||||||||| ||||||||||
Sbjct: 1299 cttgttcgtcatcattttctgccagtttaggcaccgcccgagccgtact 1251
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>dbj|AK073448.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033045A20, full
            insert sequence
          Length = 1618

 Score = 48.1 bits (24), Expect = 0.016
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                        
Query: 63   aactcaaactcaaccctatgatagtaaa 90
            |||||||||||||||||||||| |||||
Sbjct: 1532 aactcaaactcaaccctatgatggtaaa 1505



 Score = 42.1 bits (21), Expect = 1.0
 Identities = 43/49 (87%), Gaps = 1/49 (2%)
 Strand = Plus / Minus

                                                             
Query: 258  cttgttcgtcatcattt-cttcccctctaggcaccgcctgagccgtact 305
            ||||||||||||||||| || ||  | ||||||||||| ||||||||||
Sbjct: 1340 cttgttcgtcatcattttctgccagtttaggcaccgcccgagccgtact 1292
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>dbj|D12637.1|RICATADPT Oryza sativa (japonica cultivar-group) mRNA for ATP/ADP translocator,
            complete cds
          Length = 1564

 Score = 48.1 bits (24), Expect = 0.016
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                        
Query: 63   aactcaaactcaaccctatgatagtaaa 90
            |||||||||||||||||||||| |||||
Sbjct: 1477 aactcaaactcaaccctatgatggtaaa 1450



 Score = 42.1 bits (21), Expect = 1.0
 Identities = 43/49 (87%), Gaps = 1/49 (2%)
 Strand = Plus / Minus

                                                             
Query: 258  cttgttcgtcatcattt-cttcccctctaggcaccgcctgagccgtact 305
            ||||||||||||||||| || ||  | ||||||||||| ||||||||||
Sbjct: 1287 cttgttcgtcatcattttctgccagtttaggcaccgcccgagccgtact 1239
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>gb|BT016455.1| Zea mays clone Contig288 mRNA sequence
          Length = 1550

 Score = 44.1 bits (22), Expect = 0.26
 Identities = 43/50 (86%)
 Strand = Plus / Minus

                                                              
Query: 256  ctcttgttcgtcatcatttcttcccctctaggcaccgcctgagccgtact 305
            ||||||||||||||||||| |  || | || |||||||| ||||||||||
Sbjct: 1283 ctcttgttcgtcatcatttttctccatttaagcaccgccggagccgtact 1234
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>emb|X59086.1|ZMANT2MU Z.mays MANT2 mRNA for adenine nucleotide translocator (ADP/ATP
            translocase)
          Length = 1511

 Score = 44.1 bits (22), Expect = 0.26
 Identities = 43/50 (86%)
 Strand = Plus / Minus

                                                              
Query: 256  ctcttgttcgtcatcatttcttcccctctaggcaccgcctgagccgtact 305
            ||||||||||||||||||| |  || | || |||||||| ||||||||||
Sbjct: 1268 ctcttgttcgtcatcatttttctccatttaagcaccgccggagccgtact 1219
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>emb|X15712.1|ZMANTG2 Maize ANT-G2 gene for adenine nucleotide translocator
          Length = 2098

 Score = 44.1 bits (22), Expect = 0.26
 Identities = 43/50 (86%)
 Strand = Plus / Minus

                                                              
Query: 256  ctcttgttcgtcatcatttcttcccctctaggcaccgcctgagccgtact 305
            ||||||||||||||||||| |  || | || |||||||| ||||||||||
Sbjct: 1936 ctcttgttcgtcatcatttttctccatttaagcaccgccggagccgtact 1887
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>gb|AC113991.4| Mus musculus chromosome 3, clone RP24-138E17, complete sequence
          Length = 138057

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 248   acagacttctcttgttcgtcatcat 272
             ||||||||||||||||||| |||||
Sbjct: 10958 acagacttctcttgttcgttatcat 10982
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>gb|AC115049.6| Mus musculus chromosome 3, clone RP24-332L11, complete sequence
          Length = 165247

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 248   acagacttctcttgttcgtcatcat 272
             ||||||||||||||||||| |||||
Sbjct: 22002 acagacttctcttgttcgttatcat 21978
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>emb|AJ620477.1| Angiococcus disciformis partial ORF16, ORF15, ORF14, ORF13, ORF12,
             ORF11, ORF10, ORF9, ORF8, ORF7, ORF6, ORF5, ORF4, ORF3,
             tubA gene, ORF2, tubZ gene, ORF1, tubB gene, tubC gene,
             tubD gene, tubE gene, tubF gene, ORF17, ORF18, ORF19,
             ORF20, tubG gene, ORF21, ORF22, ORF23 and ORF24, strain An
             d48
          Length = 82868

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 127   ctggagttcgatgcctccacc 147
             |||||||||||||||||||||
Sbjct: 45484 ctggagttcgatgcctccacc 45504
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>gb|AC134827.4| Mus musculus BAC clone RP24-470E5 from 5, complete sequence
          Length = 193811

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 80     atgatagtaaatgttttgag 99
              ||||||||||||||||||||
Sbjct: 152272 atgatagtaaatgttttgag 152253


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,365,458
Number of Sequences: 3902068
Number of extensions: 2365458
Number of successful extensions: 48082
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 48033
Number of HSP's gapped (non-prelim): 42
length of query: 305
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 283
effective length of database: 17,147,199,772
effective search space: 4852657535476
effective search space used: 4852657535476
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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