| Clone Name | rbags24o03 |
|---|---|
| Clone Library Name | barley_pub |
>emb|BX510348.6| Zebrafish DNA sequence from clone CH211-157E20 in linkage group 6, complete sequence Length = 169275 Score = 48.1 bits (24), Expect = 0.040 Identities = 24/24 (100%) Strand = Plus / Plus Query: 649 gacattgcttcccttgccaaaaat 672 |||||||||||||||||||||||| Sbjct: 68099 gacattgcttcccttgccaaaaat 68122
>ref|XM_846536.1| PREDICTED: Canis familiaris similar to CG8253-PA (LOC609297), mRNA Length = 1715 Score = 44.1 bits (22), Expect = 0.62 Identities = 25/26 (96%) Strand = Plus / Minus Query: 80 tgtcctccacttgaatcatgaagcag 105 ||||||||||||||| |||||||||| Sbjct: 650 tgtcctccacttgaaacatgaagcag 625
>ref|XM_519939.1| PREDICTED: Pan troglodytes similar to hypothetical protein FLJ10204 (LOC464370), mRNA Length = 961 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 80 tgtcctccacttgaatcatgaagca 104 ||||||||||||||| ||||||||| Sbjct: 354 tgtcctccacttgaaacatgaagca 330
>gb|AC166770.7| Mus musculus chromosome 1, clone RP23-205P24, complete sequence Length = 213942 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 572 cactcgtcatagcacaaaaag 592 ||||||||||||||||||||| Sbjct: 197443 cactcgtcatagcacaaaaag 197463
>gb|AE017352.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 12, complete sequence Length = 906719 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 94 atcatgaagcagataaaattgtatg 118 |||||||| |||||||||||||||| Sbjct: 288227 atcatgaaccagataaaattgtatg 288251
>gb|AC101729.8| Mus musculus chromosome 1, clone RP23-362J21, complete sequence Length = 177946 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 572 cactcgtcatagcacaaaaag 592 ||||||||||||||||||||| Sbjct: 95470 cactcgtcatagcacaaaaag 95490
>ref|NM_018024.1| Homo sapiens chromosome 8 open reading frame 32 (C8orf32), mRNA Length = 1348 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 80 tgtcctccacttgaatcatgaagca 104 ||||||||||||||| ||||||||| Sbjct: 400 tgtcctccacttgaaacatgaagca 376
>gb|AC133330.3| Homo sapiens chromosome 8 clone RP11-134N2, complete sequence Length = 164916 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 80 tgtcctccacttgaatcatgaagca 104 ||||||||||||||| ||||||||| Sbjct: 131860 tgtcctccacttgaaacatgaagca 131836
>ref|XM_568215.1| Cryptococcus neoformans var. neoformans JEC21 hypothetical protein (CNL04610) partial mRNA Length = 1036 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 94 atcatgaagcagataaaattgtatg 118 |||||||| |||||||||||||||| Sbjct: 338 atcatgaaccagataaaattgtatg 362
>gb|AC134901.4| Mus musculus BAC clone RP23-287E23 from chromosome 18, complete sequence Length = 188224 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 638 cctgctcttgtgacattgcttccct 662 |||||||| |||||||||||||||| Sbjct: 141320 cctgctctagtgacattgcttccct 141296
>gb|AC122213.4| Mus musculus BAC clone RP23-104C8 from chromosome 18, complete sequence Length = 188125 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 638 cctgctcttgtgacattgcttccct 662 |||||||| |||||||||||||||| Sbjct: 6107 cctgctctagtgacattgcttccct 6083
>emb|AL137793.16| Human DNA sequence from clone RP5-1065P14 on chromosome 1q41-42.2 Contains a novel pseudogene and a novel gene, complete sequence Length = 138419 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 64 gagaagctgaggaacttgtcc 84 ||||||||||||||||||||| Sbjct: 107661 gagaagctgaggaacttgtcc 107681
>emb|BX248354.1| Corynebacterium diphtheriae gravis NCTC13129, complete genome; segment 1/8 Length = 348517 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 669 aaatagtcacctcaaaccaaa 689 ||||||||||||||||||||| Sbjct: 27191 aaatagtcacctcaaaccaaa 27171
>gb|BC008781.2| Homo sapiens chromosome 8 open reading frame 32, mRNA (cDNA clone MGC:3434 IMAGE:3609961), complete cds Length = 1322 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 80 tgtcctccacttgaatcatgaagca 104 ||||||||||||||| ||||||||| Sbjct: 318 tgtcctccacttgaaacatgaagca 294
>dbj|AK001066.1| Homo sapiens cDNA FLJ10204 fis, clone HEMBA1004933 Length = 1348 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 80 tgtcctccacttgaatcatgaagca 104 ||||||||||||||| ||||||||| Sbjct: 400 tgtcctccacttgaaacatgaagca 376
>gb|AC021305.9| Homo sapiens chromosome 8, clone RP11-140B16, complete sequence Length = 164916 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 80 tgtcctccacttgaatcatgaagca 104 ||||||||||||||| ||||||||| Sbjct: 131853 tgtcctccacttgaaacatgaagca 131829
>gb|AC098679.3| Homo sapiens BAC clone RP11-597D13 from 4, complete sequence Length = 188513 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 225 caccacaaaaagggaaataatctag 249 ||||||||||||||||| ||||||| Sbjct: 58107 caccacaaaaagggaaagaatctag 58131
>gb|AF267168.3| Homo sapiens chromosome 8 clone RP11-134N2, complete sequence Length = 180957 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 80 tgtcctccacttgaatcatgaagca 104 ||||||||||||||| ||||||||| Sbjct: 147884 tgtcctccacttgaaacatgaagca 147860
>gb|AF254981.4| Homo sapiens chromosome 8 clone RP11-429D14 map 8q24.2, complete sequence Length = 202142 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 80 tgtcctccacttgaatcatgaagca 104 ||||||||||||||| ||||||||| Sbjct: 86048 tgtcctccacttgaaacatgaagca 86024
>ref|XM_540260.2| PREDICTED: Canis familiaris similar to family with sequence similarity 46, member C (LOC483142), mRNA Length = 1327 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 152 atggctggctgtaggtaact 171 |||||||||||||||||||| Sbjct: 1150 atggctggctgtaggtaact 1131
>gb|AC141057.2| Homo sapiens chromosome 16 clone RP11-1023K5, complete sequence Length = 144576 Score = 40.1 bits (20), Expect = 9.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 482 cattccttcccttgccacgccctt 505 ||||||| |||||||||||||||| Sbjct: 84423 cattcctccccttgccacgccctt 84400
>ref|XM_386256.1| Gibberella zeae PH-1 chromosome 3 hypothetical protein (FG06080.1) partial mRNA Length = 915 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 434 catactgctctgctctgctc 453 |||||||||||||||||||| Sbjct: 694 catactgctctgctctgctc 675
>gb|AC124174.4| Mus musculus BAC clone RP23-181O22 from chromosome 3, complete sequence Length = 197553 Score = 40.1 bits (20), Expect = 9.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 523 cacctcaaaccaaataatctctct 546 ||||||||||||||||| |||||| Sbjct: 90683 cacctcaaaccaaataaactctct 90706
>gb|AC122323.3| Mus musculus BAC clone RP23-326N21 from chromosome 8, complete sequence Length = 212949 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 139 agaaaaaagaagaatggctg 158 |||||||||||||||||||| Sbjct: 1903 agaaaaaagaagaatggctg 1884
>gb|AC122911.4| Mus musculus BAC clone RP23-60K16 from 8, complete sequence Length = 150400 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 139 agaaaaaagaagaatggctg 158 |||||||||||||||||||| Sbjct: 143358 agaaaaaagaagaatggctg 143339
>gb|AY364535.1| Homo sapiens coagulation factor V (proaccelerin, labile factor) (F5) gene, complete cds Length = 75774 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 103 cagataaaattgtatgcata 122 |||||||||||||||||||| Sbjct: 58051 cagataaaattgtatgcata 58032
>emb|Z99572.1|HS86F14 Human DNA sequence from clone RP1-86F14 on chromosome 1q23-24 Contains the F5 gene for coagulation factor V (proaccelerin labile factor) and the 3' end of the SELP gene for selectin P (granule membrane protein 140kDa antigen CD62), complete sequence Length = 106571 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 103 cagataaaattgtatgcata 122 |||||||||||||||||||| Sbjct: 43472 cagataaaattgtatgcata 43491
>emb|BX897675.1| Neurospora crassa DNA linkage group IV BAC clone B2E7 Length = 68291 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 464 catccgtttctcttgtaaca 483 |||||||||||||||||||| Sbjct: 17977 catccgtttctcttgtaaca 17958
>gb|AC090132.3| Homo sapiens chromosome 8, clone RP11-813B8, complete sequence Length = 205004 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 96 catgaagcagataaaattgt 115 |||||||||||||||||||| Sbjct: 85064 catgaagcagataaaattgt 85045
>emb|BX664600.7| Zebrafish DNA sequence from clone CH211-112M13, complete sequence Length = 167489 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 400 ttctcgtagcagaaaaaggt 419 |||||||||||||||||||| Sbjct: 73994 ttctcgtagcagaaaaaggt 73975
>gb|AC148296.3| Pan troglodytes BAC clone CH251-545I16 from chromosome 7, complete sequence Length = 187553 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 96 catgaagcagataaaattgt 115 |||||||||||||||||||| Sbjct: 64596 catgaagcagataaaattgt 64615
>gb|AC154550.2| Mus musculus BAC clone RP23-444H18 from chromosome 13, complete sequence Length = 190647 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 660 ccttgccaaaaatagtcacc 679 |||||||||||||||||||| Sbjct: 188261 ccttgccaaaaatagtcacc 188242
>gb|AC023824.6| Homo sapiens chromosome 16 clone RP11-244B22, complete sequence Length = 144577 Score = 40.1 bits (20), Expect = 9.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 482 cattccttcccttgccacgccctt 505 ||||||| |||||||||||||||| Sbjct: 60154 cattcctccccttgccacgccctt 60177
>gb|AC007353.5| Homo sapiens chromosome 16 clone RP11-488I20, complete sequence Length = 201061 Score = 40.1 bits (20), Expect = 9.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 482 cattccttcccttgccacgccctt 505 ||||||| |||||||||||||||| Sbjct: 190536 cattcctccccttgccacgccctt 190559
>gb|AC154241.2| Mus musculus BAC clone RP24-171B8 from 13, complete sequence Length = 158846 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 660 ccttgccaaaaatagtcacc 679 |||||||||||||||||||| Sbjct: 56464 ccttgccaaaaatagtcacc 56445
>gb|AC138765.9| Mus musculus chromosome 15, clone RP23-30B1, complete sequence Length = 204614 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 96 catgaagcagataaaattgt 115 |||||||||||||||||||| Sbjct: 155329 catgaagcagataaaattgt 155348 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 96 catgaagcagataaaattgt 115 |||||||||||||||||||| Sbjct: 153090 catgaagcagataaaattgt 153071
>dbj|AP000872.5| Homo sapiens genomic DNA, chromosome 11q clone:RP11-727A20, complete sequences Length = 157330 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 39 gtaacaaaaactactcaaaa 58 |||||||||||||||||||| Sbjct: 119890 gtaacaaaaactactcaaaa 119909
>gb|AC144761.4| Mus musculus BAC clone RP24-303C2 from 1, complete sequence Length = 176981 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 55 aaaattgttgagaagctgag 74 |||||||||||||||||||| Sbjct: 84118 aaaattgttgagaagctgag 84099
>gb|U80794.1|GMU80794 Globorotalia menardii small subunit ribosomal RNA gene, partial sequence Length = 1162 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 643 tcttgtgacattgcttccct 662 |||||||||||||||||||| Sbjct: 802 tcttgtgacattgcttccct 821
>emb|AL845308.11| Mouse DNA sequence from clone RP23-31I2 on chromosome 2, complete sequence Length = 209309 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 434 catactgctctgctctgctc 453 |||||||||||||||||||| Sbjct: 160713 catactgctctgctctgctc 160732 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 434 catactgctctgctctgctc 453 |||||||||||||||||||| Sbjct: 54793 catactgctctgctctgctc 54774
>emb|Z83970.1|GMZ83970 G.menardii DNA for 18S ribosomal RNA Length = 1178 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 643 tcttgtgacattgcttccct 662 |||||||||||||||||||| Sbjct: 802 tcttgtgacattgcttccct 821 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6,808,007 Number of Sequences: 3902068 Number of extensions: 6808007 Number of successful extensions: 135379 Number of sequences better than 10.0: 41 Number of HSP's better than 10.0 without gapping: 41 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 135272 Number of HSP's gapped (non-prelim): 107 length of query: 705 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 682 effective length of database: 17,143,297,704 effective search space: 11691729034128 effective search space used: 11691729034128 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)