ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags25c24 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK099712.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013082G14, full insert sequence Length = 2680 Score = 553 bits (279), Expect = e-154 Identities = 524/605 (86%), Gaps = 7/605 (1%) Strand = Plus / Minus Query: 75 taactatataaatnatcatcatcggctgctgaggcagcggatgcaaaagggtcggccgca 134 ||||||||||||| |||||| || ||||| | |||||||||||| || ||||| | Sbjct: 2548 taactatataaatcatcatcgtcagctgcggcggcagcggatgcgaaggggtc------a 2495 Query: 135 gcggcagaggcagcgcccgcagccggctggtcagcgaaccggaactcgctcccgaatcca 194 ||||| | | | ||||| | || |||||||||||||||| |||||| | ||||| ||| Sbjct: 2494 gcggcggcgccggcgccagacgctggctggtcagcgaacctaaactcggtgccgaaccca 2435 Query: 195 cgagactgctgcagcgtctgggcaaaggcctggtacttgcggatgtcggcgtcactcaca 254 |||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| Sbjct: 2434 cgagactgctgcagagtctgggcgaaggcctggtacttgcggatgtcggcgtcactcaca 2375 Query: 255 ctacgacgcgcatacttcatcgactcctcgaagtgggcagccctgatctctgcaacctca 314 || || || || ||||||||||||||||||||||| || ||| ||||||| |||| ||| Sbjct: 2374 ctccggcgtgcgtacttcatcgactcctcgaagtgagccgccttgatctcagcaatatca 2315 Query: 315 tcaacctcgtcctcctccatcgcttcagggttgtccttcctccgcctctccctctcgatg 374 |||||||||||||||||||| |||||||||||||||||||||||| ||||| |||||||| Sbjct: 2314 tcaacctcgtcctcctccatggcttcagggttgtccttcctccgcttctccatctcgatg 2255 Query: 375 tccttctcgatgttctccctgatggcatacttgcaagcacgctggcaaatttcagtgata 434 ||||| || |||||||| |||||||| || ||||| ||||||||||| ||||| || ||| Sbjct: 2254 tccttttcaatgttctctctgatggcgtatttgcatgcacgctggcagatttctgtaata 2195 Query: 435 tcagcaacgctgaacccttgggtgtacttggcaagagcactcagatcaatatccttggcc 494 |||||| | ||||| ||||||||||| |||||||||||| |||| || | |||||||||| Sbjct: 2194 tcagcaccactgaaaccttgggtgtatttggcaagagcattcaggtctacatccttggcc 2135 Query: 495 aaaggagacttcctgaggcaagctttgaagatctggtgcctcgaatcgacatcaggaaga 554 | ||| ||||||| ||||||||||||||||||||| |||| || | ||||||| ||| Sbjct: 2134 acaggtgacttccggaggcaagctttgaagatctgcagcctagattgatcatcaggcaga 2075 Query: 555 gggatgtagataagctgatcaagacgccctggcctaagcagggcaggggtctatgatgtc 614 || |||||||||||||||||||||||||||||||| |||| |||| ||||| ||||| || Sbjct: 2074 ggaatgtagataagctgatcaagacgccctggccttagcaaggca-gggtcaatgatatc 2016 Query: 615 tggcctgttggtagcaccaatgatgaagacggttttcttagcattcatgccatccatctc 674 ||||||||| ||||||||||| ||||| ||||||||||| || |||||||| |||||||| Sbjct: 2015 tggcctgttagtagcaccaataatgaacacggttttcttcgcgttcatgccgtccatctc 1956 Query: 675 agtca 679 ||||| Sbjct: 1955 agtca 1951
>dbj|AK099889.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013112O07, full insert sequence Length = 2685 Score = 553 bits (279), Expect = e-154 Identities = 524/605 (86%), Gaps = 7/605 (1%) Strand = Plus / Minus Query: 75 taactatataaatnatcatcatcggctgctgaggcagcggatgcaaaagggtcggccgca 134 ||||||||||||| |||||| || ||||| | |||||||||||| || ||||| | Sbjct: 2548 taactatataaatcatcatcgtcagctgcggcggcagcggatgcgaaggggtc------a 2495 Query: 135 gcggcagaggcagcgcccgcagccggctggtcagcgaaccggaactcgctcccgaatcca 194 ||||| | | | ||||| | || |||||||||||||||| |||||| | ||||| ||| Sbjct: 2494 gcggcggcgccggcgccagacgctggctggtcagcgaacctaaactcggtgccgaaccca 2435 Query: 195 cgagactgctgcagcgtctgggcaaaggcctggtacttgcggatgtcggcgtcactcaca 254 |||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| Sbjct: 2434 cgagactgctgcagagtctgggcgaaggcctggtacttgcggatgtcggcgtcactcaca 2375 Query: 255 ctacgacgcgcatacttcatcgactcctcgaagtgggcagccctgatctctgcaacctca 314 || || || || ||||||||||||||||||||||| || ||| ||||||| |||| ||| Sbjct: 2374 ctccggcgtgcgtacttcatcgactcctcgaagtgagccgccttgatctcagcaatatca 2315 Query: 315 tcaacctcgtcctcctccatcgcttcagggttgtccttcctccgcctctccctctcgatg 374 |||||||||||||||||||| |||||||||||||||||||||||| ||||| |||||||| Sbjct: 2314 tcaacctcgtcctcctccatggcttcagggttgtccttcctccgcttctccatctcgatg 2255 Query: 375 tccttctcgatgttctccctgatggcatacttgcaagcacgctggcaaatttcagtgata 434 ||||| || |||||||| |||||||| || ||||| ||||||||||| ||||| || ||| Sbjct: 2254 tccttttcaatgttctctctgatggcgtatttgcatgcacgctggcagatttctgtaata 2195 Query: 435 tcagcaacgctgaacccttgggtgtacttggcaagagcactcagatcaatatccttggcc 494 |||||| | ||||| ||||||||||| |||||||||||| |||| || | |||||||||| Sbjct: 2194 tcagcaccactgaaaccttgggtgtatttggcaagagcattcaggtctacatccttggcc 2135 Query: 495 aaaggagacttcctgaggcaagctttgaagatctggtgcctcgaatcgacatcaggaaga 554 | ||| ||||||| ||||||||||||||||||||| |||| || | ||||||| ||| Sbjct: 2134 acaggtgacttccggaggcaagctttgaagatctgcagcctagattgatcatcaggcaga 2075 Query: 555 gggatgtagataagctgatcaagacgccctggcctaagcagggcaggggtctatgatgtc 614 || |||||||||||||||||||||||||||||||| |||| |||| ||||| ||||| || Sbjct: 2074 ggaatgtagataagctgatcaagacgccctggccttagcaaggca-gggtcaatgatatc 2016 Query: 615 tggcctgttggtagcaccaatgatgaagacggttttcttagcattcatgccatccatctc 674 ||||||||| ||||||||||| ||||| ||||||||||| || |||||||| |||||||| Sbjct: 2015 tggcctgttagtagcaccaataatgaacacggttttcttcgcgttcatgccgtccatctc 1956 Query: 675 agtca 679 ||||| Sbjct: 1955 agtca 1951
>dbj|AK098980.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013093N05, full insert sequence Length = 2701 Score = 553 bits (279), Expect = e-154 Identities = 524/605 (86%), Gaps = 7/605 (1%) Strand = Plus / Minus Query: 75 taactatataaatnatcatcatcggctgctgaggcagcggatgcaaaagggtcggccgca 134 ||||||||||||| |||||| || ||||| | |||||||||||| || ||||| | Sbjct: 2548 taactatataaatcatcatcgtcagctgcggcggcagcggatgcgaaggggtc------a 2495 Query: 135 gcggcagaggcagcgcccgcagccggctggtcagcgaaccggaactcgctcccgaatcca 194 ||||| | | | ||||| | || |||||||||||||||| |||||| | ||||| ||| Sbjct: 2494 gcggcggcgccggcgccagacgctggctggtcagcgaacctaaactcggtgccgaaccca 2435 Query: 195 cgagactgctgcagcgtctgggcaaaggcctggtacttgcggatgtcggcgtcactcaca 254 |||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| Sbjct: 2434 cgagactgctgcagagtctgggcgaaggcctggtacttgcggatgtcggcgtcactcaca 2375 Query: 255 ctacgacgcgcatacttcatcgactcctcgaagtgggcagccctgatctctgcaacctca 314 || || || || ||||||||||||||||||||||| || ||| ||||||| |||| ||| Sbjct: 2374 ctccggcgtgcgtacttcatcgactcctcgaagtgagccgccttgatctcagcaatatca 2315 Query: 315 tcaacctcgtcctcctccatcgcttcagggttgtccttcctccgcctctccctctcgatg 374 |||||||||||||||||||| |||||||||||||||||||||||| ||||| |||||||| Sbjct: 2314 tcaacctcgtcctcctccatggcttcagggttgtccttcctccgcttctccatctcgatg 2255 Query: 375 tccttctcgatgttctccctgatggcatacttgcaagcacgctggcaaatttcagtgata 434 ||||| || |||||||| |||||||| || ||||| ||||||||||| ||||| || ||| Sbjct: 2254 tccttttcaatgttctctctgatggcgtatttgcatgcacgctggcagatttctgtaata 2195 Query: 435 tcagcaacgctgaacccttgggtgtacttggcaagagcactcagatcaatatccttggcc 494 |||||| | ||||| ||||||||||| |||||||||||| |||| || | |||||||||| Sbjct: 2194 tcagcaccactgaaaccttgggtgtatttggcaagagcattcaggtctacatccttggcc 2135 Query: 495 aaaggagacttcctgaggcaagctttgaagatctggtgcctcgaatcgacatcaggaaga 554 | ||| ||||||| ||||||||||||||||||||| |||| || | ||||||| ||| Sbjct: 2134 acaggtgacttccggaggcaagctttgaagatctgcagcctagattgatcatcaggcaga 2075 Query: 555 gggatgtagataagctgatcaagacgccctggcctaagcagggcaggggtctatgatgtc 614 || |||||||||||||||||||||||||||||||| |||| |||| ||||| ||||| || Sbjct: 2074 ggaatgtagataagctgatcaagacgccctggccttagcaaggca-gggtcaatgatatc 2016 Query: 615 tggcctgttggtagcaccaatgatgaagacggttttcttagcattcatgccatccatctc 674 ||||||||| ||||||||||| ||||| ||||||||||| || |||||||| |||||||| Sbjct: 2015 tggcctgttagtagcaccaataatgaacacggttttcttcgcgttcatgccgtccatctc 1956 Query: 675 agtca 679 ||||| Sbjct: 1955 agtca 1951
>dbj|AK098874.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001D04, full insert sequence Length = 2685 Score = 553 bits (279), Expect = e-154 Identities = 524/605 (86%), Gaps = 7/605 (1%) Strand = Plus / Minus Query: 75 taactatataaatnatcatcatcggctgctgaggcagcggatgcaaaagggtcggccgca 134 ||||||||||||| |||||| || ||||| | |||||||||||| || ||||| | Sbjct: 2548 taactatataaatcatcatcgtcagctgcggcggcagcggatgcgaaggggtc------a 2495 Query: 135 gcggcagaggcagcgcccgcagccggctggtcagcgaaccggaactcgctcccgaatcca 194 ||||| | | | ||||| | || |||||||||||||||| |||||| | ||||| ||| Sbjct: 2494 gcggcggcgccggcgccagacgctggctggtcagcgaacctaaactcggtgccgaaccca 2435 Query: 195 cgagactgctgcagcgtctgggcaaaggcctggtacttgcggatgtcggcgtcactcaca 254 |||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| Sbjct: 2434 cgagactgctgcagagtctgggcgaaggcctggtacttgcggatgtcggcgtcactcaca 2375 Query: 255 ctacgacgcgcatacttcatcgactcctcgaagtgggcagccctgatctctgcaacctca 314 || || || || ||||||||||||||||||||||| || ||| ||||||| |||| ||| Sbjct: 2374 ctccggcgtgcgtacttcatcgactcctcgaagtgagccgccttgatctcagcaatatca 2315 Query: 315 tcaacctcgtcctcctccatcgcttcagggttgtccttcctccgcctctccctctcgatg 374 |||||||||||||||||||| |||||||||||||||||||||||| ||||| |||||||| Sbjct: 2314 tcaacctcgtcctcctccatggcttcagggttgtccttcctccgcttctccatctcgatg 2255 Query: 375 tccttctcgatgttctccctgatggcatacttgcaagcacgctggcaaatttcagtgata 434 ||||| || |||||||| |||||||| || ||||| ||||||||||| ||||| || ||| Sbjct: 2254 tccttttcaatgttctctctgatggcgtatttgcatgcacgctggcagatttctgtaata 2195 Query: 435 tcagcaacgctgaacccttgggtgtacttggcaagagcactcagatcaatatccttggcc 494 |||||| | ||||| ||||||||||| |||||||||||| |||| || | |||||||||| Sbjct: 2194 tcagcaccactgaaaccttgggtgtatttggcaagagcattcaggtctacatccttggcc 2135 Query: 495 aaaggagacttcctgaggcaagctttgaagatctggtgcctcgaatcgacatcaggaaga 554 | ||| ||||||| ||||||||||||||||||||| |||| || | ||||||| ||| Sbjct: 2134 acaggtgacttccggaggcaagctttgaagatctgcagcctagattgatcatcaggcaga 2075 Query: 555 gggatgtagataagctgatcaagacgccctggcctaagcagggcaggggtctatgatgtc 614 || |||||||||||||||||||||||||||||||| |||| |||| ||||| ||||| || Sbjct: 2074 ggaatgtagataagctgatcaagacgccctggccttagcaaggca-gggtcaatgatatc 2016 Query: 615 tggcctgttggtagcaccaatgatgaagacggttttcttagcattcatgccatccatctc 674 ||||||||| ||||||||||| ||||| ||||||||||| || |||||||| |||||||| Sbjct: 2015 tggcctgttagtagcaccaataatgaacacggttttcttcgcgttcatgccgtccatctc 1956 Query: 675 agtca 679 ||||| Sbjct: 1955 agtca 1951
>dbj|AK064955.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001A05, full insert sequence Length = 2685 Score = 553 bits (279), Expect = e-154 Identities = 524/605 (86%), Gaps = 7/605 (1%) Strand = Plus / Minus Query: 75 taactatataaatnatcatcatcggctgctgaggcagcggatgcaaaagggtcggccgca 134 ||||||||||||| |||||| || ||||| | |||||||||||| || ||||| | Sbjct: 2548 taactatataaatcatcatcgtcagctgcggcggcagcggatgcgaaggggtc------a 2495 Query: 135 gcggcagaggcagcgcccgcagccggctggtcagcgaaccggaactcgctcccgaatcca 194 ||||| | | | ||||| | || |||||||||||||||| |||||| | ||||| ||| Sbjct: 2494 gcggcggcgccggcgccagacgctggctggtcagcgaacctaaactcggtgccgaaccca 2435 Query: 195 cgagactgctgcagcgtctgggcaaaggcctggtacttgcggatgtcggcgtcactcaca 254 |||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| Sbjct: 2434 cgagactgctgcagagtctgggcgaaggcctggtacttgcggatgtcggcgtcactcaca 2375 Query: 255 ctacgacgcgcatacttcatcgactcctcgaagtgggcagccctgatctctgcaacctca 314 || || || || ||||||||||||||||||||||| || ||| ||||||| |||| ||| Sbjct: 2374 ctccggcgtgcgtacttcatcgactcctcgaagtgagccgccttgatctcagcaatatca 2315 Query: 315 tcaacctcgtcctcctccatcgcttcagggttgtccttcctccgcctctccctctcgatg 374 |||||||||||||||||||| |||||||||||||||||||||||| ||||| |||||||| Sbjct: 2314 tcaacctcgtcctcctccatggcttcagggttgtccttcctccgcttctccatctcgatg 2255 Query: 375 tccttctcgatgttctccctgatggcatacttgcaagcacgctggcaaatttcagtgata 434 ||||| || |||||||| |||||||| || ||||| ||||||||||| ||||| || ||| Sbjct: 2254 tccttttcaatgttctctctgatggcgtatttgcatgcacgctggcagatttctgtaata 2195 Query: 435 tcagcaacgctgaacccttgggtgtacttggcaagagcactcagatcaatatccttggcc 494 |||||| | ||||| ||||||||||| |||||||||||| |||| || | |||||||||| Sbjct: 2194 tcagcaccactgaaaccttgggtgtatttggcaagagcattcaggtctacatccttggcc 2135 Query: 495 aaaggagacttcctgaggcaagctttgaagatctggtgcctcgaatcgacatcaggaaga 554 | ||| ||||||| ||||||||||||||||||||| |||| || | ||||||| ||| Sbjct: 2134 acaggtgacttccggaggcaagctttgaagatctgcagcctagattgatcatcaggcaga 2075 Query: 555 gggatgtagataagctgatcaagacgccctggcctaagcagggcaggggtctatgatgtc 614 || |||||||||||||||||||||||||||||||| |||| |||| ||||| ||||| || Sbjct: 2074 ggaatgtagataagctgatcaagacgccctggccttagcaaggca-gggtcaatgatatc 2016 Query: 615 tggcctgttggtagcaccaatgatgaagacggttttcttagcattcatgccatccatctc 674 ||||||||| ||||||||||| ||||| ||||||||||| || |||||||| |||||||| Sbjct: 2015 tggcctgttagtagcaccaataatgaacacggttttcttcgcgttcatgccgtccatctc 1956 Query: 675 agtca 679 ||||| Sbjct: 1955 agtca 1951
>dbj|AK121641.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033055F21, full insert sequence Length = 2914 Score = 545 bits (275), Expect = e-152 Identities = 523/605 (86%), Gaps = 7/605 (1%) Strand = Plus / Minus Query: 75 taactatataaatnatcatcatcggctgctgaggcagcggatgcaaaagggtcggccgca 134 ||||||||||||| |||||| || ||||| | |||||||||||| || ||||| | Sbjct: 2548 taactatataaatcatcatcgtcagctgcggcggcagcggatgcgaaggggtc------a 2495 Query: 135 gcggcagaggcagcgcccgcagccggctggtcagcgaaccggaactcgctcccgaatcca 194 ||||| | | | ||||| | || |||||||||| ||||| |||||| | ||||| ||| Sbjct: 2494 gcggcggcgccggcgccagacgctggctggtcagtgaacctaaactcggtgccgaaccca 2435 Query: 195 cgagactgctgcagcgtctgggcaaaggcctggtacttgcggatgtcggcgtcactcaca 254 |||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| Sbjct: 2434 cgagactgctgcagagtctgggcgaaggcctggtacttgcggatgtcggcgtcactcaca 2375 Query: 255 ctacgacgcgcatacttcatcgactcctcgaagtgggcagccctgatctctgcaacctca 314 || || || || ||||||||||||||||||||||| || ||| ||||||| |||| ||| Sbjct: 2374 ctccggcgtgcgtacttcatcgactcctcgaagtgagccgccttgatctcagcaatatca 2315 Query: 315 tcaacctcgtcctcctccatcgcttcagggttgtccttcctccgcctctccctctcgatg 374 |||||||||||||||||||| |||||||||||||||||||||||| ||||| |||||||| Sbjct: 2314 tcaacctcgtcctcctccatggcttcagggttgtccttcctccgcttctccatctcgatg 2255 Query: 375 tccttctcgatgttctccctgatggcatacttgcaagcacgctggcaaatttcagtgata 434 ||||| || |||||||| |||||||| || ||||| ||||||||||| ||||| || ||| Sbjct: 2254 tccttttcaatgttctctctgatggcgtatttgcatgcacgctggcagatttctgtaata 2195 Query: 435 tcagcaacgctgaacccttgggtgtacttggcaagagcactcagatcaatatccttggcc 494 |||||| | ||||| ||||||||||| |||||||||||| |||| || | |||||||||| Sbjct: 2194 tcagcaccactgaaaccttgggtgtatttggcaagagcattcaggtctacatccttggcc 2135 Query: 495 aaaggagacttcctgaggcaagctttgaagatctggtgcctcgaatcgacatcaggaaga 554 | ||| ||||||| ||||||||||||||||||||| |||| || | ||||||| ||| Sbjct: 2134 acaggtgacttccggaggcaagctttgaagatctgcagcctagattgatcatcaggcaga 2075 Query: 555 gggatgtagataagctgatcaagacgccctggcctaagcagggcaggggtctatgatgtc 614 || |||||||||||||||||||||||||||||||| |||| |||| ||||| ||||| || Sbjct: 2074 ggaatgtagataagctgatcaagacgccctggccttagcaaggca-gggtcaatgatatc 2016 Query: 615 tggcctgttggtagcaccaatgatgaagacggttttcttagcattcatgccatccatctc 674 ||||||||| ||||||||||| ||||| ||||||||||| || |||||||| |||||||| Sbjct: 2015 tggcctgttagtagcaccaataatgaacacggttttcttcgcgttcatgccgtccatctc 1956 Query: 675 agtca 679 ||||| Sbjct: 1955 agtca 1951
>dbj|AK059991.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-301-B06, full insert sequence Length = 1232 Score = 545 bits (275), Expect = e-152 Identities = 523/605 (86%), Gaps = 7/605 (1%) Strand = Plus / Minus Query: 75 taactatataaatnatcatcatcggctgctgaggcagcggatgcaaaagggtcggccgca 134 ||||||||||||| |||||| || ||||| | |||||||||||| || ||||| | Sbjct: 1100 taactatataaatcatcatcgtcagctgcggcggcagcggatgcgaaggggtc------a 1047 Query: 135 gcggcagaggcagcgcccgcagccggctggtcagcgaaccggaactcgctcccgaatcca 194 ||||| | | | ||||| | || |||||||||||||||| |||||| | ||||| ||| Sbjct: 1046 gcggcggcgccggcgccagacgctggctggtcagcgaacctaaactcggtgccgaaccca 987 Query: 195 cgagactgctgcagcgtctgggcaaaggcctggtacttgcggatgtcggcgtcactcaca 254 |||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| Sbjct: 986 cgagactgctgcagagtctgggcgaaggcctggtacttgcggatgtcggcgtcactcaca 927 Query: 255 ctacgacgcgcatacttcatcgactcctcgaagtgggcagccctgatctctgcaacctca 314 || || || || ||||||||||||||||||||||| || ||| ||||||| |||| ||| Sbjct: 926 ctccggcgtgcgtacttcatcgactcctcgaagtgagccgccttgatctcagcaatatca 867 Query: 315 tcaacctcgtcctcctccatcgcttcagggttgtccttcctccgcctctccctctcgatg 374 |||||||||||||||||||| |||||||||||||||||||||||| ||||| |||||||| Sbjct: 866 tcaacctcgtcctcctccatggcttcagggttgtccttcctccgcttctccatctcgatg 807 Query: 375 tccttctcgatgttctccctgatggcatacttgcaagcacgctggcaaatttcagtgata 434 ||||| || |||||||| |||||||| || ||||| ||||||||||| ||||| || ||| Sbjct: 806 tccttttcaatgttctctctgatggcgtatttgcatgcacgctggcagatttctgtaata 747 Query: 435 tcagcaacgctgaacccttgggtgtacttggcaagagcactcagatcaatatccttggcc 494 |||||| | ||||| ||||||||||| |||||||||||| |||| || | |||||||||| Sbjct: 746 tcagcaccactgaaaccttgggtgtatttggcaagagcattcaggtctacatccttggcc 687 Query: 495 aaaggagacttcctgaggcaagctttgaagatctggtgcctcgaatcgacatcaggaaga 554 | ||| ||||||| ||||||||||||||||||||| |||| || | ||||||| ||| Sbjct: 686 acaggtgacttccggaggcaagctttgaagatctgcagcctagattgatcatcaggcaga 627 Query: 555 gggatgtagataagctgatcaagacgccctggcctaagcagggcaggggtctatgatgtc 614 || |||||||||||||||||||||||||||||||| |||| |||| ||||| ||||| || Sbjct: 626 ggaatgtagataagctgatcaagacgccctggccttagcaaggca-gggtcaatgatatc 568 Query: 615 tggcctgttggtagcaccaatgatgaagacggttttcttagcattcatgccatccatctc 674 ||||||||| ||||||||||| ||||| | ||||||||| || |||||||| |||||||| Sbjct: 567 tggcctgttagtagcaccaataatgaacatggttttcttcgcgttcatgccgtccatctc 508 Query: 675 agtca 679 ||||| Sbjct: 507 agtca 503
>gb|AY108324.1| Zea mays PCO097023 mRNA sequence Length = 1794 Score = 420 bits (212), Expect = e-114 Identities = 441/516 (85%), Gaps = 1/516 (0%) Strand = Plus / Minus Query: 170 gaaccggaactcgctcccgaatccacgagactgctgcagcgtctgggcaaaggcctggta 229 ||||||||||||||| || || || || |||||||| || |||||||| ||||||||||| Sbjct: 1448 gaaccggaactcgctgccaaacccgcgggactgctggagtgtctgggcgaaggcctggta 1389 Query: 230 cttgcggatgtcggcgtcactcacactacgacgcgcatacttcatcgactcctcgaagtg 289 |||||||||||||||||||||||| || ||||| || |||||||| |||||||||||||| Sbjct: 1388 cttgcggatgtcggcgtcactcacgctgcgacgggcgtacttcatggactcctcgaagtg 1329 Query: 290 ggcagccctgatctctgcaacctcatcaacctcgtcctcctccatcgcttcagggttgtc 349 |||||| ||||||| || | || || |||||||| |||||||| || || |||||||| Sbjct: 1328 agcagccttgatctcagcgatgtcgtctacctcgtcttcctccatagcctcggggttgtc 1269 Query: 350 cttcctccgcctctccctctcgatgtccttctcgatgttctccctgatggcatacttgca 409 ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct: 1268 tttcctgcgcctctccctctcgatatccttctcgatgttctccctgatggcatacttgca 1209 Query: 410 agcacgctggcaaatttcagtgatatcagcaacgctgaacccttgggtgtacttggcaag 469 || |||||||| || || |||||||| ||| ||||||| || |||||||| ||||| || Sbjct: 1208 cgcgcgctggcagatctctgtgatatctgcaccgctgaaaccctgggtgtatttggcgag 1149 Query: 470 agcactcagatcaatatccttggccaaaggagacttcctgaggcaagctttgaagatctg 529 |||| ||| |||| ||||||||||| ||||||||||||||| || |||||||||||||| Sbjct: 1148 agcattcaagtcaacatccttggccacaggagacttcctgagacaggctttgaagatctg 1089 Query: 530 gtgcctcgaatcgacatcaggaagagggatgtagataagctgatcaagacgccctggcct 589 |||| || | |||| || ||||| || ||||||||||||||||||||||| ||||| Sbjct: 1088 aagcctggactgctcatcgggcagaggaatatagataagctgatcaagacgcccaggcct 1029 Query: 590 aagcagggcaggggtctatgatgtctggcctgttggtagcaccaatgatgaagacggttt 649 |||| ||| ||||| |||||||| || ||||| || ||||| || || || || || | Sbjct: 1028 cagcaaggc-tgggtcaatgatgtccggtctgttagttgcaccgataataaaaaccgtct 970 Query: 650 tcttagcattcatgccatccatctcagtcagcagct 685 |||| ||||||||||||||||||||||| ||||||| Sbjct: 969 tcttggcattcatgccatccatctcagtaagcagct 934 Score = 54.0 bits (27), Expect = 6e-04 Identities = 59/70 (84%) Strand = Plus / Minus Query: 72 atttaactatataaatnatcatcatcggctgctgaggcagcggatgcaaaagggtcggcc 131 |||||||| ||||| | |||||| || ||||||| ||||||||||| || || |||||| Sbjct: 1537 atttaactgtataagtcatcatcgtcagctgctgctgcagcggatgcgaagggatcggcc 1478 Query: 132 gcagcggcag 141 ||||| |||| Sbjct: 1477 gcagcagcag 1468
>ref|NM_196705.1| Oryza sativa (japonica cultivar-group) putative endoplasmic reticulum membrane fusion protein (OSJNBa0046P18.14), mRNA Length = 2454 Score = 406 bits (205), Expect = e-110 Identities = 440/517 (85%), Gaps = 1/517 (0%) Strand = Plus / Minus Query: 169 cgaaccggaactcgctcccgaatccacgagactgctgcagcgtctgggcaaaggcctggt 228 |||| |||||||| || || || || ||||||||||||| ||||||||| || ||||||| Sbjct: 2368 cgaaacggaactcactgccaaacccgcgagactgctgcaacgtctgggcgaacgcctggt 2309 Query: 229 acttgcggatgtcggcgtcactcacactacgacgcgcatacttcatcgactcctcgaagt 288 |||||||||||||||| || || ||||| || ||||| |||||||||||||||||||||| Sbjct: 2308 acttgcggatgtcggcatcgctgacactgcggcgcgcgtacttcatcgactcctcgaagt 2249 Query: 289 gggcagccctgatctctgcaacctcatcaacctcgtcctcctccatcgcttcagggttgt 348 |||| ||| ||||||| |||| || || || || || |||||||||||||||||||| | Sbjct: 2248 gggctgccttgatctcagcaatgtcgtcgacttcatcttcctccatcgcttcagggttct 2189 Query: 349 ccttcctccgcctctccctctcgatgtccttctcgatgttctccctgatggcatacttgc 408 |||| ||||||||||||||||| |||||||||||||||||||| || || ||||| |||| Sbjct: 2188 ccttactccgcctctccctctcaatgtccttctcgatgttctctctaatcgcatatttgc 2129 Query: 409 aagcacgctggcaaatttcagtgatatcagcaacgctgaacccttgggtgtacttggcaa 468 | |||||||| || ||||| || ||||| ||| | ||||| ||||||||||||||||||| Sbjct: 2128 atgcacgctgacagatttctgtaatatctgcaccactgaagccttgggtgtacttggcaa 2069 Query: 469 gagcactcagatcaatatccttggccaaaggagacttcctgaggcaagctttgaagatct 528 |||| ||| || | |||||| |||| ||| ||||||||||||||||||||||| || | Sbjct: 2068 gagcgttcaagtccacatccttcgccacaggggacttcctgaggcaagctttgaaaattt 2009 Query: 529 ggtgcctcgaatcgacatcaggaagagggatgtagataagctgatcaagacgccctggcc 588 || |||| || | ||||||| || || |||||||| |||||||| ||||||||||||| Sbjct: 2008 ggagcctagattgctcatcaggcagtggaatgtagatcagctgatcgagacgccctggcc 1949 Query: 589 taagcagggcaggggtctatgatgtctggcctgttggtagcaccaatgatgaagacggtt 648 |||||| ||| || ||||||||||| |||||||| ||||| ||||| ||||| || || Sbjct: 1948 taagcaaggc-cggatctatgatgtcaggcctgtttgtagccccaataatgaaaacagtc 1890 Query: 649 ttcttagcattcatgccatccatctcagtcagcagct 685 ||||| |||||||||||||||||||| |||| ||||| Sbjct: 1889 ttcttggcattcatgccatccatctctgtcaacagct 1853
>dbj|AK058908.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-008-E02, full insert sequence Length = 872 Score = 406 bits (205), Expect = e-110 Identities = 440/517 (85%), Gaps = 1/517 (0%) Strand = Plus / Minus Query: 169 cgaaccggaactcgctcccgaatccacgagactgctgcagcgtctgggcaaaggcctggt 228 |||| |||||||| || || || || ||||||||||||| ||||||||| || ||||||| Sbjct: 526 cgaaacggaactcactgccaaacccgcgagactgctgcaacgtctgggcgaacgcctggt 467 Query: 229 acttgcggatgtcggcgtcactcacactacgacgcgcatacttcatcgactcctcgaagt 288 |||||||||||||||| || || ||||| || ||||| |||||||||||||||||||||| Sbjct: 466 acttgcggatgtcggcatcgctgacactgcggcgcgcgtacttcatcgactcctcgaagt 407 Query: 289 gggcagccctgatctctgcaacctcatcaacctcgtcctcctccatcgcttcagggttgt 348 |||| ||| ||||||| |||| || || || || || |||||||||||||||||||| | Sbjct: 406 gggctgccttgatctcagcaatgtcgtcgacttcatcttcctccatcgcttcagggttct 347 Query: 349 ccttcctccgcctctccctctcgatgtccttctcgatgttctccctgatggcatacttgc 408 |||| ||||||||||||||||| |||||||||||||||||||| || || ||||| |||| Sbjct: 346 ccttactccgcctctccctctcaatgtccttctcgatgttctctctaatcgcatatttgc 287 Query: 409 aagcacgctggcaaatttcagtgatatcagcaacgctgaacccttgggtgtacttggcaa 468 | |||||||| || ||||| || ||||| ||| | ||||| ||||||||||||||||||| Sbjct: 286 atgcacgctgacagatttctgtaatatctgcaccactgaagccttgggtgtacttggcaa 227 Query: 469 gagcactcagatcaatatccttggccaaaggagacttcctgaggcaagctttgaagatct 528 |||| ||| || | |||||| |||| ||| ||||||||||||||||||||||| || | Sbjct: 226 gagcgttcaagtccacatccttcgccacaggggacttcctgaggcaagctttgaaaattt 167 Query: 529 ggtgcctcgaatcgacatcaggaagagggatgtagataagctgatcaagacgccctggcc 588 || |||| || | ||||||| || || |||||||| |||||||| ||||||||||||| Sbjct: 166 ggagcctagattgctcatcaggcagtggaatgtagatcagctgatcgagacgccctggcc 107 Query: 589 taagcagggcaggggtctatgatgtctggcctgttggtagcaccaatgatgaagacggtt 648 |||||| ||| || ||||||||||| |||||||| ||||| ||||| ||||| || || Sbjct: 106 taagcaaggc-cggatctatgatgtcaggcctgtttgtagccccaataatgaaaacagtc 48 Query: 649 ttcttagcattcatgccatccatctcagtcagcagct 685 ||||| |||||||||||||||||||| |||| ||||| Sbjct: 47 ttcttggcattcatgccatccatctctgtcaacagct 11
>gb|AY105040.1| Zea mays PCO097024 mRNA sequence Length = 2126 Score = 373 bits (188), Expect = e-100 Identities = 432/512 (84%), Gaps = 1/512 (0%) Strand = Plus / Minus Query: 174 cggaactcgctcccgaatccacgagactgctgcagcgtctgggcaaaggcctggtacttg 233 ||||||||||| ||||| ||||| |||||||||| ||||||||| || |||||||||||| Sbjct: 1832 cggaactcgctgccgaacccacgggactgctgcaacgtctgggcgaacgcctggtacttg 1773 Query: 234 cggatgtcggcgtcactcacactacgacgcgcatacttcatcgactcctcgaagtgggca 293 ||||| || || ||||| ||||| || || ||||||||||| |||||||||||||| || Sbjct: 1772 cggatatcagcatcactgacactgcgccgagcatacttcatagactcctcgaagtgagct 1713 Query: 294 gccctgatctctgcaacctcatcaacctcgtcctcctccatcgcttcagggttgtccttc 353 || ||||||| |||| ||| || || || || ||||||||||| ||||||||||||||| Sbjct: 1712 gctttgatctcggcaatctcgtccacttcatcttcctccatcgcctcagggttgtccttc 1653 Query: 354 ctccgcctctccctctcgatgtccttctcgatgttctccctgatggcatacttgcaagca 413 ||||||| |||||||| || |||||||| |||||||| ||||| ||||| ||||| ||| Sbjct: 1652 atccgcctttccctctcaatatccttctcaatgttctctctgattgcatatttgcacgca 1593 Query: 414 cgctggcaaatttcagtgatatcagcaacgctgaacccttgggtgtacttggcaagagca 473 |||||||||||||| |||||||| || | ||||||||||| |||||||| ||||||||| Sbjct: 1592 cgctggcaaatttctgtgatatctgctccactgaacccttgtgtgtacttagcaagagca 1533 Query: 474 ctcagatcaatatccttggccaaaggagacttcctgaggcaagctttgaagatctggtgc 533 |||| || | |||||| |||| ||| |||||||| ||||| || |||||||||||| || Sbjct: 1532 ttcaggtccacatcctttgccacaggggacttccttaggcaggccttgaagatctggagc 1473 Query: 534 ctcgaatcgacatcaggaagagggatgtagataagctgatcaagacgccctggcctaagc 593 || || | ||||||| || || |||||||| ||||| ||||||||||||||||| || Sbjct: 1472 ctagactgctcatcaggcagtggaatgtagatcagctggtcaagacgccctggcctcaga 1413 Query: 594 agggcaggggtctatgatgtctggcctgttggtagcaccaatgatgaagacggttttctt 653 || ||| || || |||||||| |||||||| ||||||||||| || || || |||||||| Sbjct: 1412 agagca-ggatcaatgatgtcaggcctgtttgtagcaccaataataaacacagttttctt 1354 Query: 654 agcattcatgccatccatctcagtcagcagct 685 || |||||||||||||| || ||||| |||| Sbjct: 1353 ggcgttcatgccatccatttctgtcagtagct 1322
>gb|AY107375.1| Zea mays PCO097021 mRNA sequence Length = 711 Score = 365 bits (184), Expect = 1e-97 Identities = 316/360 (87%) Strand = Plus / Minus Query: 170 gaaccggaactcgctcccgaatccacgagactgctgcagcgtctgggcaaaggcctggta 229 ||||||||||||||| || || ||||| |||||||| || |||||||| ||||||||||| Sbjct: 374 gaaccggaactcgctgccaaacccacgggactgctggagtgtctgggcgaaggcctggta 315 Query: 230 cttgcggatgtcggcgtcactcacactacgacgcgcatacttcatcgactcctcgaagtg 289 ||||||||||||||| ||||| ||||| || || || |||||||| |||||||||||||| Sbjct: 314 cttgcggatgtcggcatcactgacactgcggcgggcgtacttcatggactcctcgaagtg 255 Query: 290 ggcagccctgatctctgcaacctcatcaacctcgtcctcctccatcgcttcagggttgtc 349 ||||||| ||||||| |||| || || |||||||| |||||||| || ||||||||||| Sbjct: 254 ggcagccatgatctcggcaatgtcgtccacctcgtcttcctccatggcctcagggttgtc 195 Query: 350 cttcctccgcctctccctctcgatgtccttctcgatgttctccctgatggcatacttgca 409 |||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 194 cttcctgcgcctctcccgctcgatgtccttctcgatgttctccctgatggcatacttgca 135 Query: 410 agcacgctggcaaatttcagtgatatcagcaacgctgaacccttgggtgtacttggcaag 469 ||||||||||| || || |||||||| || | ||||| || ||||||||||||||||| Sbjct: 134 cgcacgctggcagatctcggtgatatctgctccactgaaaccctgggtgtacttggcaag 75 Query: 470 agcactcagatcaatatccttggccaaaggagacttcctgaggcaagctttgaagatctg 529 |||| || |||| ||||| |||| |||||||||||||||||| |||||||||||||| Sbjct: 74 agcatgcaagtcaacgtccttagccacaggagacttcctgaggcaggctttgaagatctg 15 Score = 46.1 bits (23), Expect = 0.15 Identities = 29/31 (93%) Strand = Plus / Minus Query: 111 gcggatgcaaaagggtcggccgcagcggcag 141 ||||||||||| |||||||||||| |||||| Sbjct: 424 gcggatgcaaaggggtcggccgcaccggcag 394
>gb|BT017848.1| Zea mays clone EL01N0510F05.c mRNA sequence Length = 646 Score = 309 bits (156), Expect = 7e-81 Identities = 309/360 (85%) Strand = Plus / Minus Query: 170 gaaccggaactcgctcccgaatccacgagactgctgcagcgtctgggcaaaggcctggta 229 ||||||||||||||| || || || || |||||||| || |||||||| ||||||||||| Sbjct: 392 gaaccggaactcgctgccaaacccgcgggactgctggagtgtctgggcgaaggcctggta 333 Query: 230 cttgcggatgtcggcgtcactcacactacgacgcgcatacttcatcgactcctcgaagtg 289 |||||||||||||||||||||||| || ||||| || |||||||| |||||||||||||| Sbjct: 332 cttgcggatgtcggcgtcactcacgctgcgacgggcgtacttcatggactcctcgaagtg 273 Query: 290 ggcagccctgatctctgcaacctcatcaacctcgtcctcctccatcgcttcagggttgtc 349 |||||| ||||||| || | || || |||||||| |||||||| || || |||||||| Sbjct: 272 agcagccttgatctcagcgatgtcgtctacctcgtcttcctccatagcctcggggttgtc 213 Query: 350 cttcctccgcctctccctctcgatgtccttctcgatgttctccctgatggcatacttgca 409 || || ||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct: 212 tttgctgcgcctctccctctcgatatccttctcgatgttctccctgatggcatacttgca 153 Query: 410 agcacgctggcaaatttcagtgatatcagcaacgctgaacccttgggtgtacttggcaag 469 || |||||||| || || |||||||| | |||||||| || |||||||| ||||| || Sbjct: 152 cgcgcgctggcagatctctgtgatatctgggacgctgaaaccctgggtgtatttggcgag 93 Query: 470 agcactcagatcaatatccttggccaaaggagacttcctgaggcaagctttgaagatctg 529 |||| ||| |||| ||||||||||| |||||||||| ||| | |||||||||||||| Sbjct: 92 agcattcaagtcaacatccttggccacaggagacttcttgaaagaggctttgaagatctg 33 Score = 46.1 bits (23), Expect = 0.15 Identities = 58/70 (82%) Strand = Plus / Minus Query: 72 atttaactatataaatnatcatcatcggctgctgaggcagcggatgcaaaagggtcggcc 131 |||||||| ||||| | |||||| || ||||||| ||||||||||| || || ||| || Sbjct: 481 atttaactgtataagtcatcatcgtcagctgctgctgcagcggatgcgaagggatcgtcc 422 Query: 132 gcagcggcag 141 ||||| |||| Sbjct: 421 gcagcagcag 412
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 281 bits (142), Expect = 1e-72 Identities = 263/304 (86%), Gaps = 6/304 (1%) Strand = Plus / Plus Query: 75 taactatataaatnatcatcatcggctgctgaggcagcggatgcaaaagggtcggccgca 134 ||||||||||||| |||||| || ||||| | |||||||||||| || ||||| | Sbjct: 2834336 taactatataaatcatcatcgtcagctgcggcggcagcggatgcgaaggggtc------a 2834389 Query: 135 gcggcagaggcagcgcccgcagccggctggtcagcgaaccggaactcgctcccgaatcca 194 ||||| | | | ||||| | || |||||||||||||||| |||||| | ||||| ||| Sbjct: 2834390 gcggcggcgccggcgccagacgctggctggtcagcgaacctaaactcggtgccgaaccca 2834449 Query: 195 cgagactgctgcagcgtctgggcaaaggcctggtacttgcggatgtcggcgtcactcaca 254 |||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| Sbjct: 2834450 cgagactgctgcagagtctgggcgaaggcctggtacttgcggatgtcggcgtcactcaca 2834509 Query: 255 ctacgacgcgcatacttcatcgactcctcgaagtgggcagccctgatctctgcaacctca 314 || || || || ||||||||||||||||||||||| || ||| ||||||| |||| ||| Sbjct: 2834510 ctccggcgtgcgtacttcatcgactcctcgaagtgagccgccttgatctcagcaatatca 2834569 Query: 315 tcaacctcgtcctcctccatcgcttcagggttgtccttcctccgcctctccctctcgatg 374 |||||||||||||||||||| |||||||||||||||||||||||| ||||| |||||||| Sbjct: 2834570 tcaacctcgtcctcctccatggcttcagggttgtccttcctccgcttctccatctcgatg 2834629 Query: 375 tcct 378 |||| Sbjct: 2834630 tcct 2834633 Score = 278 bits (140), Expect = 2e-71 Identities = 258/296 (87%), Gaps = 1/296 (0%) Strand = Plus / Plus Query: 384 atgttctccctgatggcatacttgcaagcacgctggcaaatttcagtgatatcagcaacg 443 |||||||| |||||||| || ||||| ||||||||||| ||||| || ||||||||| | Sbjct: 2834734 atgttctctctgatggcgtatttgcatgcacgctggcagatttctgtaatatcagcacca 2834793 Query: 444 ctgaacccttgggtgtacttggcaagagcactcagatcaatatccttggccaaaggagac 503 ||||| ||||||||||| |||||||||||| |||| || | ||||||||||| ||| ||| Sbjct: 2834794 ctgaaaccttgggtgtatttggcaagagcattcaggtctacatccttggccacaggtgac 2834853 Query: 504 ttcctgaggcaagctttgaagatctggtgcctcgaatcgacatcaggaagagggatgtag 563 |||| ||||||||||||||||||||| |||| || | ||||||| ||||| |||||| Sbjct: 2834854 ttccggaggcaagctttgaagatctgcagcctagattgatcatcaggcagaggaatgtag 2834913 Query: 564 ataagctgatcaagacgccctggcctaagcagggcaggggtctatgatgtctggcctgtt 623 |||||||||||||||||||||||||| |||| |||| ||||| ||||| ||||||||||| Sbjct: 2834914 ataagctgatcaagacgccctggccttagcaaggca-gggtcaatgatatctggcctgtt 2834972 Query: 624 ggtagcaccaatgatgaagacggttttcttagcattcatgccatccatctcagtca 679 ||||||||||| ||||| ||||||||||| || |||||||| ||||||||||||| Sbjct: 2834973 agtagcaccaataatgaacacggttttcttcgcgttcatgccgtccatctcagtca 2835028
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 281 bits (142), Expect = 1e-72 Identities = 263/304 (86%), Gaps = 6/304 (1%) Strand = Plus / Plus Query: 75 taactatataaatnatcatcatcggctgctgaggcagcggatgcaaaagggtcggccgca 134 ||||||||||||| |||||| || ||||| | |||||||||||| || ||||| | Sbjct: 2834447 taactatataaatcatcatcgtcagctgcggcggcagcggatgcgaaggggtc------a 2834500 Query: 135 gcggcagaggcagcgcccgcagccggctggtcagcgaaccggaactcgctcccgaatcca 194 ||||| | | | ||||| | || |||||||||||||||| |||||| | ||||| ||| Sbjct: 2834501 gcggcggcgccggcgccagacgctggctggtcagcgaacctaaactcggtgccgaaccca 2834560 Query: 195 cgagactgctgcagcgtctgggcaaaggcctggtacttgcggatgtcggcgtcactcaca 254 |||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| Sbjct: 2834561 cgagactgctgcagagtctgggcgaaggcctggtacttgcggatgtcggcgtcactcaca 2834620 Query: 255 ctacgacgcgcatacttcatcgactcctcgaagtgggcagccctgatctctgcaacctca 314 || || || || ||||||||||||||||||||||| || ||| ||||||| |||| ||| Sbjct: 2834621 ctccggcgtgcgtacttcatcgactcctcgaagtgagccgccttgatctcagcaatatca 2834680 Query: 315 tcaacctcgtcctcctccatcgcttcagggttgtccttcctccgcctctccctctcgatg 374 |||||||||||||||||||| |||||||||||||||||||||||| ||||| |||||||| Sbjct: 2834681 tcaacctcgtcctcctccatggcttcagggttgtccttcctccgcttctccatctcgatg 2834740 Query: 375 tcct 378 |||| Sbjct: 2834741 tcct 2834744 Score = 278 bits (140), Expect = 2e-71 Identities = 258/296 (87%), Gaps = 1/296 (0%) Strand = Plus / Plus Query: 384 atgttctccctgatggcatacttgcaagcacgctggcaaatttcagtgatatcagcaacg 443 |||||||| |||||||| || ||||| ||||||||||| ||||| || ||||||||| | Sbjct: 2834845 atgttctctctgatggcgtatttgcatgcacgctggcagatttctgtaatatcagcacca 2834904 Query: 444 ctgaacccttgggtgtacttggcaagagcactcagatcaatatccttggccaaaggagac 503 ||||| ||||||||||| |||||||||||| |||| || | ||||||||||| ||| ||| Sbjct: 2834905 ctgaaaccttgggtgtatttggcaagagcattcaggtctacatccttggccacaggtgac 2834964 Query: 504 ttcctgaggcaagctttgaagatctggtgcctcgaatcgacatcaggaagagggatgtag 563 |||| ||||||||||||||||||||| |||| || | ||||||| ||||| |||||| Sbjct: 2834965 ttccggaggcaagctttgaagatctgcagcctagattgatcatcaggcagaggaatgtag 2835024 Query: 564 ataagctgatcaagacgccctggcctaagcagggcaggggtctatgatgtctggcctgtt 623 |||||||||||||||||||||||||| |||| |||| ||||| ||||| ||||||||||| Sbjct: 2835025 ataagctgatcaagacgccctggccttagcaaggca-gggtcaatgatatctggcctgtt 2835083 Query: 624 ggtagcaccaatgatgaagacggttttcttagcattcatgccatccatctcagtca 679 ||||||||||| ||||| ||||||||||| || |||||||| ||||||||||||| Sbjct: 2835084 agtagcaccaataatgaacacggttttcttcgcgttcatgccgtccatctcagtca 2835139
>gb|AC137635.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0038D20, from chromosome 3, complete sequence Length = 165395 Score = 281 bits (142), Expect = 1e-72 Identities = 263/304 (86%), Gaps = 6/304 (1%) Strand = Plus / Plus Query: 75 taactatataaatnatcatcatcggctgctgaggcagcggatgcaaaagggtcggccgca 134 ||||||||||||| |||||| || ||||| | |||||||||||| || ||||| | Sbjct: 106292 taactatataaatcatcatcgtcagctgcggcggcagcggatgcgaaggggtc------a 106345 Query: 135 gcggcagaggcagcgcccgcagccggctggtcagcgaaccggaactcgctcccgaatcca 194 ||||| | | | ||||| | || |||||||||||||||| |||||| | ||||| ||| Sbjct: 106346 gcggcggcgccggcgccagacgctggctggtcagcgaacctaaactcggtgccgaaccca 106405 Query: 195 cgagactgctgcagcgtctgggcaaaggcctggtacttgcggatgtcggcgtcactcaca 254 |||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| Sbjct: 106406 cgagactgctgcagagtctgggcgaaggcctggtacttgcggatgtcggcgtcactcaca 106465 Query: 255 ctacgacgcgcatacttcatcgactcctcgaagtgggcagccctgatctctgcaacctca 314 || || || || ||||||||||||||||||||||| || ||| ||||||| |||| ||| Sbjct: 106466 ctccggcgtgcgtacttcatcgactcctcgaagtgagccgccttgatctcagcaatatca 106525 Query: 315 tcaacctcgtcctcctccatcgcttcagggttgtccttcctccgcctctccctctcgatg 374 |||||||||||||||||||| |||||||||||||||||||||||| ||||| |||||||| Sbjct: 106526 tcaacctcgtcctcctccatggcttcagggttgtccttcctccgcttctccatctcgatg 106585 Query: 375 tcct 378 |||| Sbjct: 106586 tcct 106589 Score = 278 bits (140), Expect = 2e-71 Identities = 258/296 (87%), Gaps = 1/296 (0%) Strand = Plus / Plus Query: 384 atgttctccctgatggcatacttgcaagcacgctggcaaatttcagtgatatcagcaacg 443 |||||||| |||||||| || ||||| ||||||||||| ||||| || ||||||||| | Sbjct: 106690 atgttctctctgatggcgtatttgcatgcacgctggcagatttctgtaatatcagcacca 106749 Query: 444 ctgaacccttgggtgtacttggcaagagcactcagatcaatatccttggccaaaggagac 503 ||||| ||||||||||| |||||||||||| |||| || | ||||||||||| ||| ||| Sbjct: 106750 ctgaaaccttgggtgtatttggcaagagcattcaggtctacatccttggccacaggtgac 106809 Query: 504 ttcctgaggcaagctttgaagatctggtgcctcgaatcgacatcaggaagagggatgtag 563 |||| ||||||||||||||||||||| |||| || | ||||||| ||||| |||||| Sbjct: 106810 ttccggaggcaagctttgaagatctgcagcctagattgatcatcaggcagaggaatgtag 106869 Query: 564 ataagctgatcaagacgccctggcctaagcagggcaggggtctatgatgtctggcctgtt 623 |||||||||||||||||||||||||| |||| |||| ||||| ||||| ||||||||||| Sbjct: 106870 ataagctgatcaagacgccctggccttagcaaggca-gggtcaatgatatctggcctgtt 106928 Query: 624 ggtagcaccaatgatgaagacggttttcttagcattcatgccatccatctcagtca 679 ||||||||||| ||||| ||||||||||| || |||||||| ||||||||||||| Sbjct: 106929 agtagcaccaataatgaacacggttttcttcgcgttcatgccgtccatctcagtca 106984
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 218 bits (110), Expect = 2e-53 Identities = 261/310 (84%), Gaps = 1/310 (0%) Strand = Plus / Minus Query: 376 ccttctcgatgttctccctgatggcatacttgcaagcacgctggcaaatttcagtgatat 435 |||||||||||||||| || || ||||| ||||| |||||||| || ||||| || |||| Sbjct: 15400851 ccttctcgatgttctctctaatcgcatatttgcatgcacgctgacagatttctgtaatat 15400792 Query: 436 cagcaacgctgaacccttgggtgtacttggcaagagcactcagatcaatatccttggcca 495 | ||| | ||||| ||||||||||||||||||||||| ||| || | |||||| |||| Sbjct: 15400791 ctgcaccactgaagccttgggtgtacttggcaagagcgttcaagtccacatccttcgcca 15400732 Query: 496 aaggagacttcctgaggcaagctttgaagatctggtgcctcgaatcgacatcaggaagag 555 ||| ||||||||||||||||||||||| || ||| |||| || | ||||||| || | Sbjct: 15400731 caggggacttcctgaggcaagctttgaaaatttggagcctagattgctcatcaggcagtg 15400672 Query: 556 ggatgtagataagctgatcaagacgccctggcctaagcagggcaggggtctatgatgtct 615 | |||||||| |||||||| ||||||||||||||||||| ||| || ||||||||||| Sbjct: 15400671 gaatgtagatcagctgatcgagacgccctggcctaagcaaggc-cggatctatgatgtca 15400613 Query: 616 ggcctgttggtagcaccaatgatgaagacggttttcttagcattcatgccatccatctca 675 |||||||| ||||| ||||| ||||| || || ||||| |||||||||||||||||||| Sbjct: 15400612 ggcctgtttgtagccccaataatgaaaacagtcttcttggcattcatgccatccatctct 15400553 Query: 676 gtcagcagct 685 |||| ||||| Sbjct: 15400552 gtcaacagct 15400543 Score = 194 bits (98), Expect = 3e-46 Identities = 182/210 (86%) Strand = Plus / Minus Query: 169 cgaaccggaactcgctcccgaatccacgagactgctgcagcgtctgggcaaaggcctggt 228 |||| |||||||| || || || || ||||||||||||| ||||||||| || ||||||| Sbjct: 15401406 cgaaacggaactcactgccaaacccgcgagactgctgcaacgtctgggcgaacgcctggt 15401347 Query: 229 acttgcggatgtcggcgtcactcacactacgacgcgcatacttcatcgactcctcgaagt 288 |||||||||||||||| || || ||||| || ||||| |||||||||||||||||||||| Sbjct: 15401346 acttgcggatgtcggcatcgctgacactgcggcgcgcgtacttcatcgactcctcgaagt 15401287 Query: 289 gggcagccctgatctctgcaacctcatcaacctcgtcctcctccatcgcttcagggttgt 348 |||| ||| ||||||| |||| || || || || || |||||||||||||||||||| | Sbjct: 15401286 gggctgccttgatctcagcaatgtcgtcgacttcatcttcctccatcgcttcagggttct 15401227 Query: 349 ccttcctccgcctctccctctcgatgtcct 378 |||| ||||||||||||||||| ||||||| Sbjct: 15401226 ccttactccgcctctccctctcaatgtcct 15401197
>gb|AC087544.2|AC087544 Oryza sativa (japonica cultivar-group) chromosome 10 clone nbxb0046P18, complete sequence Length = 144720 Score = 218 bits (110), Expect = 2e-53 Identities = 261/310 (84%), Gaps = 1/310 (0%) Strand = Plus / Minus Query: 376 ccttctcgatgttctccctgatggcatacttgcaagcacgctggcaaatttcagtgatat 435 |||||||||||||||| || || ||||| ||||| |||||||| || ||||| || |||| Sbjct: 118214 ccttctcgatgttctctctaatcgcatatttgcatgcacgctgacagatttctgtaatat 118155 Query: 436 cagcaacgctgaacccttgggtgtacttggcaagagcactcagatcaatatccttggcca 495 | ||| | ||||| ||||||||||||||||||||||| ||| || | |||||| |||| Sbjct: 118154 ctgcaccactgaagccttgggtgtacttggcaagagcgttcaagtccacatccttcgcca 118095 Query: 496 aaggagacttcctgaggcaagctttgaagatctggtgcctcgaatcgacatcaggaagag 555 ||| ||||||||||||||||||||||| || ||| |||| || | ||||||| || | Sbjct: 118094 caggggacttcctgaggcaagctttgaaaatttggagcctagattgctcatcaggcagtg 118035 Query: 556 ggatgtagataagctgatcaagacgccctggcctaagcagggcaggggtctatgatgtct 615 | |||||||| |||||||| ||||||||||||||||||| ||| || ||||||||||| Sbjct: 118034 gaatgtagatcagctgatcgagacgccctggcctaagcaaggc-cggatctatgatgtca 117976 Query: 616 ggcctgttggtagcaccaatgatgaagacggttttcttagcattcatgccatccatctca 675 |||||||| ||||| ||||| ||||| || || ||||| |||||||||||||||||||| Sbjct: 117975 ggcctgtttgtagccccaataatgaaaacagtcttcttggcattcatgccatccatctct 117916 Query: 676 gtcagcagct 685 |||| ||||| Sbjct: 117915 gtcaacagct 117906 Score = 194 bits (98), Expect = 3e-46 Identities = 182/210 (86%) Strand = Plus / Minus Query: 169 cgaaccggaactcgctcccgaatccacgagactgctgcagcgtctgggcaaaggcctggt 228 |||| |||||||| || || || || ||||||||||||| ||||||||| || ||||||| Sbjct: 118769 cgaaacggaactcactgccaaacccgcgagactgctgcaacgtctgggcgaacgcctggt 118710 Query: 229 acttgcggatgtcggcgtcactcacactacgacgcgcatacttcatcgactcctcgaagt 288 |||||||||||||||| || || ||||| || ||||| |||||||||||||||||||||| Sbjct: 118709 acttgcggatgtcggcatcgctgacactgcggcgcgcgtacttcatcgactcctcgaagt 118650 Query: 289 gggcagccctgatctctgcaacctcatcaacctcgtcctcctccatcgcttcagggttgt 348 |||| ||| ||||||| |||| || || || || || |||||||||||||||||||| | Sbjct: 118649 gggctgccttgatctcagcaatgtcgtcgacttcatcttcctccatcgcttcagggttct 118590 Query: 349 ccttcctccgcctctccctctcgatgtcct 378 |||| ||||||||||||||||| ||||||| Sbjct: 118589 ccttactccgcctctccctctcaatgtcct 118560
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 218 bits (110), Expect = 2e-53 Identities = 261/310 (84%), Gaps = 1/310 (0%) Strand = Plus / Minus Query: 376 ccttctcgatgttctccctgatggcatacttgcaagcacgctggcaaatttcagtgatat 435 |||||||||||||||| || || ||||| ||||| |||||||| || ||||| || |||| Sbjct: 15409092 ccttctcgatgttctctctaatcgcatatttgcatgcacgctgacagatttctgtaatat 15409033 Query: 436 cagcaacgctgaacccttgggtgtacttggcaagagcactcagatcaatatccttggcca 495 | ||| | ||||| ||||||||||||||||||||||| ||| || | |||||| |||| Sbjct: 15409032 ctgcaccactgaagccttgggtgtacttggcaagagcgttcaagtccacatccttcgcca 15408973 Query: 496 aaggagacttcctgaggcaagctttgaagatctggtgcctcgaatcgacatcaggaagag 555 ||| ||||||||||||||||||||||| || ||| |||| || | ||||||| || | Sbjct: 15408972 caggggacttcctgaggcaagctttgaaaatttggagcctagattgctcatcaggcagtg 15408913 Query: 556 ggatgtagataagctgatcaagacgccctggcctaagcagggcaggggtctatgatgtct 615 | |||||||| |||||||| ||||||||||||||||||| ||| || ||||||||||| Sbjct: 15408912 gaatgtagatcagctgatcgagacgccctggcctaagcaaggc-cggatctatgatgtca 15408854 Query: 616 ggcctgttggtagcaccaatgatgaagacggttttcttagcattcatgccatccatctca 675 |||||||| ||||| ||||| ||||| || || ||||| |||||||||||||||||||| Sbjct: 15408853 ggcctgtttgtagccccaataatgaaaacagtcttcttggcattcatgccatccatctct 15408794 Query: 676 gtcagcagct 685 |||| ||||| Sbjct: 15408793 gtcaacagct 15408784 Score = 194 bits (98), Expect = 3e-46 Identities = 182/210 (86%) Strand = Plus / Minus Query: 169 cgaaccggaactcgctcccgaatccacgagactgctgcagcgtctgggcaaaggcctggt 228 |||| |||||||| || || || || ||||||||||||| ||||||||| || ||||||| Sbjct: 15409647 cgaaacggaactcactgccaaacccgcgagactgctgcaacgtctgggcgaacgcctggt 15409588 Query: 229 acttgcggatgtcggcgtcactcacactacgacgcgcatacttcatcgactcctcgaagt 288 |||||||||||||||| || || ||||| || ||||| |||||||||||||||||||||| Sbjct: 15409587 acttgcggatgtcggcatcgctgacactgcggcgcgcgtacttcatcgactcctcgaagt 15409528 Query: 289 gggcagccctgatctctgcaacctcatcaacctcgtcctcctccatcgcttcagggttgt 348 |||| ||| ||||||| |||| || || || || || |||||||||||||||||||| | Sbjct: 15409527 gggctgccttgatctcagcaatgtcgtcgacttcatcttcctccatcgcttcagggttct 15409468 Query: 349 ccttcctccgcctctccctctcgatgtcct 378 |||| ||||||||||||||||| ||||||| Sbjct: 15409467 ccttactccgcctctccctctcaatgtcct 15409438
>ref|NM_111819.3| Arabidopsis thaliana CDC48 (CELL DIVISION CYCLE 48); ATP binding / ATPase/ hydrolase/ nucleoside-triphosphatase/ nucleotide binding AT3G09840 (CDC48) mRNA, complete cds Length = 2797 Score = 178 bits (90), Expect = 2e-41 Identities = 231/278 (83%) Strand = Plus / Minus Query: 197 agactgctgcagcgtctgggcaaaggcctggtacttgcggatgtcggcgtcactcacact 256 ||||||||||| |||||| |||||||| |||||||| | |||||| || ||||||||||| Sbjct: 2461 agactgctgcaacgtctgagcaaaggcttggtacttcctgatgtctgcatcactcacact 2402 Query: 257 acgacgcgcatacttcatcgactcctcgaagtgggcagccctgatctctgcaacctcatc 316 | |||||||||||||||||||||||| ||||| ||||| ||||||||| || ||||| Sbjct: 2401 cctacgcgcatacttcatcgactcctcaaagtgtgcagctttgatctctgatacttcatc 2342 Query: 317 aacctcgtcctcctccatcgcttcagggttgtccttcctccgcctctccctctcgatgtc 376 || | || |||||||| || || ||||| || |||||| | ||||| | || ||||| Sbjct: 2341 cactccatcttcctccattgcctctgggttctcgctcctcctcttctccttttcaatgtc 2282 Query: 377 cttctcgatgttctccctgatggcatacttgcaagcacgctggcaaatttcagtgatatc 436 |||||| ||||| || |||||||| ||||||||||| | ||||||||| ||||||||||| Sbjct: 2281 cttctcaatgttttctctgatggcgtacttgcaagctctctggcaaatctcagtgatatc 2222 Query: 437 agcaacgctgaacccttgggtgtacttggcaagagcac 474 |||| | ||||| || || ||||| || ||||| |||| Sbjct: 2221 agcaccactgaaaccctgagtgtatttagcaagtgcac 2184 Score = 83.8 bits (42), Expect = 7e-13 Identities = 63/70 (90%) Strand = Plus / Minus Query: 610 atgtctggcctgttggtagcaccaatgatgaagacggttttcttagcattcatgccatcc 669 ||||| || ||||||||||| || |||||||||||||||||||| |||||||| || ||| Sbjct: 2049 atgtcaggtctgttggtagctccgatgatgaagacggttttcttggcattcattccgtcc 1990 Query: 670 atctcagtca 679 |||||||||| Sbjct: 1989 atctcagtca 1980
>gb|AY094434.1| Arabidopsis thaliana AT3g09840/F8A24_11 mRNA, complete cds Length = 2628 Score = 178 bits (90), Expect = 2e-41 Identities = 231/278 (83%) Strand = Plus / Minus Query: 197 agactgctgcagcgtctgggcaaaggcctggtacttgcggatgtcggcgtcactcacact 256 ||||||||||| |||||| |||||||| |||||||| | |||||| || ||||||||||| Sbjct: 2417 agactgctgcaacgtctgagcaaaggcttggtacttcctgatgtctgcatcactcacact 2358 Query: 257 acgacgcgcatacttcatcgactcctcgaagtgggcagccctgatctctgcaacctcatc 316 | |||||||||||||||||||||||| ||||| ||||| ||||||||| || ||||| Sbjct: 2357 cctacgcgcatacttcatcgactcctcaaagtgtgcagctttgatctctgatacttcatc 2298 Query: 317 aacctcgtcctcctccatcgcttcagggttgtccttcctccgcctctccctctcgatgtc 376 || | || |||||||| || || ||||| || |||||| | ||||| | || ||||| Sbjct: 2297 cactccatcttcctccattgcctctgggttctcgctcctcctcttctccttttcaatgtc 2238 Query: 377 cttctcgatgttctccctgatggcatacttgcaagcacgctggcaaatttcagtgatatc 436 |||||| ||||| || |||||||| ||||||||||| | ||||||||| ||||||||||| Sbjct: 2237 cttctcaatgttttctctgatggcgtacttgcaagctctctggcaaatctcagtgatatc 2178 Query: 437 agcaacgctgaacccttgggtgtacttggcaagagcac 474 |||| | ||||| || || ||||| || ||||| |||| Sbjct: 2177 agcaccactgaaaccctgagtgtatttagcaagtgcac 2140 Score = 83.8 bits (42), Expect = 7e-13 Identities = 63/70 (90%) Strand = Plus / Minus Query: 610 atgtctggcctgttggtagcaccaatgatgaagacggttttcttagcattcatgccatcc 669 ||||| || ||||||||||| || |||||||||||||||||||| |||||||| || ||| Sbjct: 2005 atgtcaggtctgttggtagctccgatgatgaagacggttttcttggcattcattccgtcc 1946 Query: 670 atctcagtca 679 |||||||||| Sbjct: 1945 atctcagtca 1936
>gb|AY065076.1| Arabidopsis thaliana putative transitional endoplasmic reticulum ATPase (F8A24.11) mRNA, complete cds Length = 2730 Score = 178 bits (90), Expect = 2e-41 Identities = 231/278 (83%) Strand = Plus / Minus Query: 197 agactgctgcagcgtctgggcaaaggcctggtacttgcggatgtcggcgtcactcacact 256 ||||||||||| |||||| |||||||| |||||||| | |||||| || ||||||||||| Sbjct: 2451 agactgctgcaacgtctgagcaaaggcttggtacttcctgatgtctgcatcactcacact 2392 Query: 257 acgacgcgcatacttcatcgactcctcgaagtgggcagccctgatctctgcaacctcatc 316 | |||||||||||||||||||||||| ||||| ||||| ||||||||| || ||||| Sbjct: 2391 cctacgcgcatacttcatcgactcctcaaagtgtgcagctttgatctctgatacttcatc 2332 Query: 317 aacctcgtcctcctccatcgcttcagggttgtccttcctccgcctctccctctcgatgtc 376 || | || |||||||| || || ||||| || |||||| | ||||| | || ||||| Sbjct: 2331 cactccatcttcctccattgcctctgggttctcgctcctcctcttctccttttcaatgtc 2272 Query: 377 cttctcgatgttctccctgatggcatacttgcaagcacgctggcaaatttcagtgatatc 436 |||||| ||||| || |||||||| ||||||||||| | ||||||||| ||||||||||| Sbjct: 2271 cttctcaatgttttctctgatggcgtacttgcaagctctctggcaaatctcagtgatatc 2212 Query: 437 agcaacgctgaacccttgggtgtacttggcaagagcac 474 |||| | ||||| || || ||||| || ||||| |||| Sbjct: 2211 agcaccactgaaaccctgagtgtatttagcaagtgcac 2174 Score = 83.8 bits (42), Expect = 7e-13 Identities = 63/70 (90%) Strand = Plus / Minus Query: 610 atgtctggcctgttggtagcaccaatgatgaagacggttttcttagcattcatgccatcc 669 ||||| || ||||||||||| || |||||||||||||||||||| |||||||| || ||| Sbjct: 2039 atgtcaggtctgttggtagctccgatgatgaagacggttttcttggcattcattccgtcc 1980 Query: 670 atctcagtca 679 |||||||||| Sbjct: 1979 atctcagtca 1970
>dbj|AK222120.1| Arabidopsis thaliana mRNA for putative transitional endoplasmic reticulum ATPase, complete cds, clone: RAFL22-93-G21 Length = 697 Score = 178 bits (90), Expect = 2e-41 Identities = 231/278 (83%) Strand = Plus / Minus Query: 197 agactgctgcagcgtctgggcaaaggcctggtacttgcggatgtcggcgtcactcacact 256 ||||||||||| |||||| |||||||| |||||||| | |||||| || ||||||||||| Sbjct: 351 agactgctgcaacgtctgagcaaaggcttggtacttcctgatgtctgcatcactcacact 292 Query: 257 acgacgcgcatacttcatcgactcctcgaagtgggcagccctgatctctgcaacctcatc 316 | |||||||||||||||||||||||| ||||| ||||| ||||||||| || ||||| Sbjct: 291 cctacgcgcatacttcatcgactcctcaaagtgtgcagctttgatctctgatacttcatc 232 Query: 317 aacctcgtcctcctccatcgcttcagggttgtccttcctccgcctctccctctcgatgtc 376 || | || |||||||| || || ||||| || |||||| | ||||| | || ||||| Sbjct: 231 cactccatcttcctccattgcctctgggttctcgctcctcctcttctccttttcaatgtc 172 Query: 377 cttctcgatgttctccctgatggcatacttgcaagcacgctggcaaatttcagtgatatc 436 |||||| ||||| || |||||||| ||||||||||| | ||||||||| ||||||||||| Sbjct: 171 cttctcaatgttttctctgatggcgtacttgcaagctctctggcaaatctcagtgatatc 112 Query: 437 agcaacgctgaacccttgggtgtacttggcaagagcac 474 |||| | ||||| || || ||||| || ||||| |||| Sbjct: 111 agcaccactgaaaccctgagtgtatttagcaagtgcac 74
>gb|U37587.1|ATU37587 Arabidopsis thaliana cell division cycle protein (CDC48) mRNA, complete cds Length = 2638 Score = 178 bits (90), Expect = 2e-41 Identities = 231/278 (83%) Strand = Plus / Minus Query: 197 agactgctgcagcgtctgggcaaaggcctggtacttgcggatgtcggcgtcactcacact 256 ||||||||||| |||||| |||||||| |||||||| | |||||| || ||||||||||| Sbjct: 2400 agactgctgcaacgtctgagcaaaggcttggtacttcctgatgtctgcatcactcacact 2341 Query: 257 acgacgcgcatacttcatcgactcctcgaagtgggcagccctgatctctgcaacctcatc 316 | |||||||||||||||||||||||| ||||| ||||| ||||||||| || ||||| Sbjct: 2340 cctacgcgcatacttcatcgactcctcaaagtgtgcagctttgatctctgatacttcatc 2281 Query: 317 aacctcgtcctcctccatcgcttcagggttgtccttcctccgcctctccctctcgatgtc 376 || | || |||||||| || || ||||| || |||||| | ||||| | || ||||| Sbjct: 2280 cactccatcttcctccattgcctctgggttctcgctcctcctcttctccttttcaatgtc 2221 Query: 377 cttctcgatgttctccctgatggcatacttgcaagcacgctggcaaatttcagtgatatc 436 |||||| ||||| || |||||||| ||||||||||| | ||||||||| ||||||||||| Sbjct: 2220 cttctcaatgttttctctgatggcgtacttgcaagctctctggcaaatctcagtgatatc 2161 Query: 437 agcaacgctgaacccttgggtgtacttggcaagagcac 474 |||| | ||||| || || ||||| || ||||| |||| Sbjct: 2160 agcaccactgaaaccctgagtgtatttagcaagtgcac 2123 Score = 83.8 bits (42), Expect = 7e-13 Identities = 63/70 (90%) Strand = Plus / Minus Query: 610 atgtctggcctgttggtagcaccaatgatgaagacggttttcttagcattcatgccatcc 669 ||||| || ||||||||||| || |||||||||||||||||||| |||||||| || ||| Sbjct: 1988 atgtcaggtctgttggtagctccgatgatgaagacggttttcttggcattcattccgtcc 1929 Query: 670 atctcagtca 679 |||||||||| Sbjct: 1928 atctcagtca 1919
>ref|NM_115183.2| Arabidopsis thaliana ATP binding / hydrolase/ nucleoside-triphosphatase/ nucleotide binding AT3G53230 mRNA, complete cds Length = 2672 Score = 174 bits (88), Expect = 2e-40 Identities = 260/316 (82%), Gaps = 1/316 (0%) Strand = Plus / Minus Query: 359 cctctccctctcgatgtccttctcgatgttctccctgatggcatacttgcaagcacgctg 418 ||||||| |||| || |||||||||||||| || ||||| ||||||||||||| |||||| Sbjct: 2186 cctctccttctcaatatccttctcgatgttttctctgatcgcatacttgcaagaacgctg 2127 Query: 419 gcaaatttcagtgatatcagcaacgctgaacccttgggtgtacttggcaagagcactcag 478 |||||| || ||||| || ||| | ||||| |||||||||||||| |||||||| ||||| Sbjct: 2126 gcaaatctctgtgatgtccgcaccactgaagccttgggtgtacttagcaagagccctcag 2067 Query: 479 atcaatatccttggccaaaggagacttcctgaggcaagctttgaagatctggtgcctcga 538 |||| ||| || |||| ||| || ||||| | ||||| || |||||||||| | || Sbjct: 2066 gtcaacatctttcgccacaggtgatttcctcaagcaagacttaaagatctggtaacgaga 2007 Query: 539 atcgacatcaggaagagggatgtagataagctgatcaagacgccctggcctaagcagggc 598 || ||||||||||||| |||||||| |||||||| ||||| || || | || || || Sbjct: 2006 ctcctcatcaggaagaggaatgtagatgagctgatcgagacgaccaggacgcagaagtgc 1947 Query: 599 aggggtctatgatgtctggcctgttggtagcaccaatgatgaagacggttttcttagcat 658 | || || || |||||||| ||||| ||||| || ||||||||||| || |||||||||| Sbjct: 1946 a-ggatcaataatgtctggtctgtttgtagctccgatgatgaagaccgtcttcttagcat 1888 Query: 659 tcatgccatccatctc 674 |||| ||||||||||| Sbjct: 1887 tcattccatccatctc 1872
>emb|AL132958.1|ATT4D2 Arabidopsis thaliana DNA chromosome 3, BAC clone T4D2 Length = 92611 Score = 174 bits (88), Expect = 2e-40 Identities = 260/316 (82%), Gaps = 1/316 (0%) Strand = Plus / Minus Query: 359 cctctccctctcgatgtccttctcgatgttctccctgatggcatacttgcaagcacgctg 418 ||||||| |||| || |||||||||||||| || ||||| ||||||||||||| |||||| Sbjct: 50254 cctctccttctcaatatccttctcgatgttttctctgatcgcatacttgcaagaacgctg 50195 Query: 419 gcaaatttcagtgatatcagcaacgctgaacccttgggtgtacttggcaagagcactcag 478 |||||| || ||||| || ||| | ||||| |||||||||||||| |||||||| ||||| Sbjct: 50194 gcaaatctctgtgatgtccgcaccactgaagccttgggtgtacttagcaagagccctcag 50135 Query: 479 atcaatatccttggccaaaggagacttcctgaggcaagctttgaagatctggtgcctcga 538 |||| ||| || |||| ||| || ||||| | ||||| || |||||||||| | || Sbjct: 50134 gtcaacatctttcgccacaggtgatttcctcaagcaagacttaaagatctggtaacgaga 50075 Query: 539 atcgacatcaggaagagggatgtagataagctgatcaagacgccctggcctaagcagggc 598 || ||||||||||||| |||||||| |||||||| ||||| || || | || || || Sbjct: 50074 ctcctcatcaggaagaggaatgtagatgagctgatcgagacgaccaggacgcagaagtgc 50015 Query: 599 aggggtctatgatgtctggcctgttggtagcaccaatgatgaagacggttttcttagcat 658 | || || || |||||||| ||||| ||||| || ||||||||||| || |||||||||| Sbjct: 50014 a-ggatcaataatgtctggtctgtttgtagctccgatgatgaagaccgtcttcttagcat 49956 Query: 659 tcatgccatccatctc 674 |||| ||||||||||| Sbjct: 49955 tcattccatccatctc 49940
>gb|AY232675.1| Mirabilis jalapa CDC48-like protein mRNA, partial cds Length = 669 Score = 125 bits (63), Expect = 2e-25 Identities = 249/311 (80%) Strand = Plus / Minus Query: 270 ttcatcgactcctcgaagtgggcagccctgatctctgcaacctcatcaacctcgtcctcc 329 ||||| |||||||| ||||| ||||| | || || |||||||| || || | |||||| Sbjct: 464 ttcatggactcctcaaagtgagcagcttttatttcagcaacctcgtcctccacatcctcc 405 Query: 330 tccatcgcttcagggttgtccttcctccgcctctccctctcgatgtccttctcgatgttc 389 |||||||| ||||| || || | || | | |||| ||||| || |||||||| |||||| Sbjct: 404 tccatcgcctcaggattctcacttcttctcttctctctctcaatatccttctcaatgttc 345 Query: 390 tccctgatggcatacttgcaagcacgctggcaaatttcagtgatatcagcaacgctgaac 449 |||||||||||||| ||||||||||| ||||| ||||| |||||||| ||| ||||||| Sbjct: 344 tccctgatggcatatttgcaagcacgttggcatatttcggtgatatctgcaccgctgaaa 285 Query: 450 ccttgggtgtacttggcaagagcactcagatcaatatccttggccaaaggagacttcctg 509 || || ||||| || ||||| || || | ||||| ||| || || | |||||||||||| Sbjct: 284 ccctgagtgtatttagcaagtgccctaatatcaacatctttagcaataggagacttcctc 225 Query: 510 aggcaagctttgaagatctggtgcctcgaatcgacatcaggaagagggatgtagataagc 569 | | || ||||| |||||||| | ||||| |||| || | ||||||||||||||| Sbjct: 224 aaggctgccttgaaaatctggtgacgagaatcctcatctggtaaagggatgtagataagt 165 Query: 570 tgatcaagacg 580 ||||||||||| Sbjct: 164 tgatcaagacg 154
>gb|AC015985.10|ATAC015985 Arabidopsis thaliana chromosome III BAC F8A24 genomic sequence, complete sequence Length = 72902 Score = 115 bits (58), Expect = 2e-22 Identities = 97/110 (88%) Strand = Plus / Plus Query: 197 agactgctgcagcgtctgggcaaaggcctggtacttgcggatgtcggcgtcactcacact 256 ||||||||||| |||||| |||||||| |||||||| | |||||| || ||||||||||| Sbjct: 44013 agactgctgcaacgtctgagcaaaggcttggtacttcctgatgtctgcatcactcacact 44072 Query: 257 acgacgcgcatacttcatcgactcctcgaagtgggcagccctgatctctg 306 | |||||||||||||||||||||||| ||||| ||||| ||||||||| Sbjct: 44073 cctacgcgcatacttcatcgactcctcaaagtgtgcagctttgatctctg 44122 Score = 83.8 bits (42), Expect = 7e-13 Identities = 63/70 (90%) Strand = Plus / Plus Query: 610 atgtctggcctgttggtagcaccaatgatgaagacggttttcttagcattcatgccatcc 669 ||||| || ||||||||||| || |||||||||||||||||||| |||||||| || ||| Sbjct: 44514 atgtcaggtctgttggtagctccgatgatgaagacggttttcttggcattcattccgtcc 44573 Query: 670 atctcagtca 679 |||||||||| Sbjct: 44574 atctcagtca 44583 Score = 77.8 bits (39), Expect = 4e-11 Identities = 84/99 (84%) Strand = Plus / Plus Query: 376 ccttctcgatgttctccctgatggcatacttgcaagcacgctggcaaatttcagtgatat 435 ||||||| ||||| || |||||||| ||||||||||| | ||||||||| |||||||||| Sbjct: 44281 ccttctcaatgttttctctgatggcgtacttgcaagctctctggcaaatctcagtgatat 44340 Query: 436 cagcaacgctgaacccttgggtgtacttggcaagagcac 474 ||||| | ||||| || || ||||| || ||||| |||| Sbjct: 44341 cagcaccactgaaaccctgagtgtatttagcaagtgcac 44379
>gb|AY456394.1| 'Chlorella' ellipsoidea cell division cycle protein 48 mRNA, partial cds Length = 2033 Score = 113 bits (57), Expect = 8e-22 Identities = 84/93 (90%) Strand = Plus / Minus Query: 200 ctgctgcagcgtctgggcaaaggcctggtacttgcggatgtcggcgtcactcacactacg 259 |||||||||||||||||||||||||||||||||||||||||| ||||| || ||| || Sbjct: 1709 ctgctgcagcgtctgggcaaaggcctggtacttgcggatgtctgcgtcgctgacagagcg 1650 Query: 260 acgcgcatacttcatcgactcctcgaagtgggc 292 ||| ||||||||||| | ||||||||||||||| Sbjct: 1649 acgggcatacttcatggcctcctcgaagtgggc 1617 Score = 87.7 bits (44), Expect = 4e-14 Identities = 108/128 (84%), Gaps = 1/128 (0%) Strand = Plus / Minus Query: 555 gggatgtagataagctgatcaagacgccctggcctaagcagggcaggggtctatgatgtc 614 ||||||||||| ||||| || || || || |||| |||||||| || ||| |||||||| Sbjct: 1357 gggatgtagatcagctggtccagtcggccaggccgcagcagggc-ggagtcgatgatgtc 1299 Query: 615 tggcctgttggtagcaccaatgatgaagacggttttcttagcattcatgccatccatctc 674 ||||||||||| || ||||||||||||||||| ||||| | |||||||| |||||||| Sbjct: 1298 cggcctgttggttgctccaatgatgaagacggtcttcttggagttcatgccgtccatctc 1239 Query: 675 agtcagca 682 ||||||| Sbjct: 1238 cgtcagca 1231 Score = 52.0 bits (26), Expect = 0.002 Identities = 47/54 (87%) Strand = Plus / Minus Query: 356 ccgcctctccctctcgatgtccttctcgatgttctccctgatggcatacttgca 409 |||| |||||||||| ||||||||||| ||||| || |||||||| || ||||| Sbjct: 1556 ccgcttctccctctcaatgtccttctcaatgttttctctgatggcgtatttgca 1503
>ref|XM_774925.1| PREDICTED: Strongylocentrotus purpuratus similar to Transitional endoplasmic reticulum ATPase (TER ATPase) (15S Mg(2+)-ATPase p97 subunit) (Valosin-containing protein) (VCP), transcript variant 1 (LOC575609), mRNA Length = 3597 Score = 83.8 bits (42), Expect = 7e-13 Identities = 106/126 (84%), Gaps = 1/126 (0%) Strand = Plus / Minus Query: 555 gggatgtagataagctgatcaagacgccctggcctaagcagggcaggggtctatgatgtc 614 |||||||||||||||||||| ||||| ||||| | || | |||| | ||||| |||||| Sbjct: 1766 gggatgtagataagctgatctagacgtcctggacgtaggatggca-gagtctacgatgtc 1708 Query: 615 tggcctgttggtagcaccaatgatgaagacggttttcttagcattcatgccatccatctc 674 |||||||||||| ||||| |||||||||||| | ||||| | ||| ||||||||||| Sbjct: 1707 tggcctgttggttgcaccgatgatgaagacgttcttcttggagcccataccatccatctc 1648 Query: 675 agtcag 680 |||||| Sbjct: 1647 agtcag 1642
>ref|XM_796615.1| PREDICTED: Strongylocentrotus purpuratus similar to Transitional endoplasmic reticulum ATPase (TER ATPase) (15S Mg(2+)-ATPase p97 subunit) (Valosin-containing protein) (VCP), transcript variant 2 (LOC575609), mRNA Length = 3621 Score = 83.8 bits (42), Expect = 7e-13 Identities = 106/126 (84%), Gaps = 1/126 (0%) Strand = Plus / Minus Query: 555 gggatgtagataagctgatcaagacgccctggcctaagcagggcaggggtctatgatgtc 614 |||||||||||||||||||| ||||| ||||| | || | |||| | ||||| |||||| Sbjct: 1766 gggatgtagataagctgatctagacgtcctggacgtaggatggca-gagtctacgatgtc 1708 Query: 615 tggcctgttggtagcaccaatgatgaagacggttttcttagcattcatgccatccatctc 674 |||||||||||| ||||| |||||||||||| | ||||| | ||| ||||||||||| Sbjct: 1707 tggcctgttggttgcaccgatgatgaagacgttcttcttggagcccataccatccatctc 1648 Query: 675 agtcag 680 |||||| Sbjct: 1647 agtcag 1642
>gb|DQ359725.1| Glycine max plamsma membrane-associated AAA-ATPase mRNA, complete cds Length = 2628 Score = 77.8 bits (39), Expect = 4e-11 Identities = 200/253 (79%), Gaps = 3/253 (1%) Strand = Plus / Minus Query: 210 gtctgggcaaaggcctggtacttgcggatgtcggcgtcactcacactacgacgcgcatac 269 ||||| ||||| ||||| |||||||| || || || ||||| ||||| | || ||| || Sbjct: 2345 gtctgagcaaatgcctgatacttgcgaatatcagcatcactaacactcctccgtgcaaac 2286 Query: 270 ttcatcgactcctcgaagtgggcagccctgatctctgcaacctcatcaacctcg---tcc 326 ||||| |||||||| || || |||||| ||||||| ||||| || || | || || Sbjct: 2285 ttcattgactcctcaaaatgagcagccttgatctccgcaacttcgtcgtcgacggtatct 2226 Query: 327 tcctccatcgcttcagggttgtccttcctccgcctctccctctcgatgtccttctcgatg 386 || ||||| || |||||||| ||| | ||| |||||| | ||| ||||||||||| ||| Sbjct: 2225 tcatccatggcctcagggttttccctactcttcctctctcgctcaatgtccttctctatg 2166 Query: 387 ttctccctgatggcatacttgcaagcacgctggcaaatttcagtgatatcagcaacgctg 446 || || || |||||||| ||||| || |||||||| ||||| || ||||||||| | ||| Sbjct: 2165 ttttctcttatggcatatttgcatgctcgctggcatatttctgtaatatcagcaccactg 2106 Query: 447 aacccttgggtgt 459 |||||||| |||| Sbjct: 2105 aacccttgagtgt 2093
>gb|U20213.1|GMU20213 Glycine max valosin-containing protein mRNA, complete cds Length = 2654 Score = 77.8 bits (39), Expect = 4e-11 Identities = 200/253 (79%), Gaps = 3/253 (1%) Strand = Plus / Minus Query: 210 gtctgggcaaaggcctggtacttgcggatgtcggcgtcactcacactacgacgcgcatac 269 ||||| ||||| ||||| |||||||| || || || ||||| ||||| | || ||| || Sbjct: 2365 gtctgagcaaatgcctgatacttgcgaatatcagcatcactaacactcctccgtgcaaac 2306 Query: 270 ttcatcgactcctcgaagtgggcagccctgatctctgcaacctcatcaacctcg---tcc 326 ||||| |||||||| || || |||||| ||||||| ||||| || || | || || Sbjct: 2305 ttcattgactcctcaaaatgagcagccttgatctccgcaacttcgtcgtcgacggtatct 2246 Query: 327 tcctccatcgcttcagggttgtccttcctccgcctctccctctcgatgtccttctcgatg 386 || ||||| || |||||||| ||| | ||| |||||| | ||| ||||||||||| ||| Sbjct: 2245 tcatccatggcctcagggttttccctactcttcctctctcgctcaatgtccttctctatg 2186 Query: 387 ttctccctgatggcatacttgcaagcacgctggcaaatttcagtgatatcagcaacgctg 446 || || || |||||||| ||||| || |||||||| ||||| || ||||||||| | ||| Sbjct: 2185 ttttctcttatggcatatttgcatgctcgctggcatatttctgtaatatcagcaccactg 2126 Query: 447 aacccttgggtgt 459 |||||||| |||| Sbjct: 2125 aacccttgagtgt 2113
>gb|BC007562.1| Homo sapiens valosin-containing protein, mRNA (cDNA clone IMAGE:2988964), partial cds Length = 2537 Score = 75.8 bits (38), Expect = 2e-10 Identities = 84/98 (85%), Gaps = 1/98 (1%) Strand = Plus / Minus Query: 544 catcaggaagagggatgtagataagctgatcaagacgccctggcctaagcagggcagggg 603 |||||||||| ||||||||||| |||||||||||||| || || || || | |||| || Sbjct: 1463 catcaggaagtgggatgtagatgagctgatcaagacggccaggtctgaggatggca-gga 1405 Query: 604 tctatgatgtctggcctgttggtagcaccaatgatgaa 641 || |||||||| |||| ||||||||| ||||||||||| Sbjct: 1404 tcaatgatgtcaggccggttggtagcgccaatgatgaa 1367 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 404 cttgcaagcacgctggcaaat 424 ||||||||||||||||||||| Sbjct: 1603 cttgcaagcacgctggcaaat 1583
>gb|BC023563.1| Homo sapiens valosin-containing protein, mRNA (cDNA clone IMAGE:4422977), **** WARNING: chimeric clone **** Length = 5159 Score = 75.8 bits (38), Expect = 2e-10 Identities = 84/98 (85%), Gaps = 1/98 (1%) Strand = Plus / Minus Query: 544 catcaggaagagggatgtagataagctgatcaagacgccctggcctaagcagggcagggg 603 |||||||||| ||||||||||| |||||||||||||| || || || || | |||| || Sbjct: 4081 catcaggaagtgggatgtagatgagctgatcaagacggccaggtctgaggatggca-gga 4023 Query: 604 tctatgatgtctggcctgttggtagcaccaatgatgaa 641 || |||||||| |||| ||||||||| ||||||||||| Sbjct: 4022 tcaatgatgtcaggccggttggtagcgccaatgatgaa 3985 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 404 cttgcaagcacgctggcaaat 424 ||||||||||||||||||||| Sbjct: 4221 cttgcaagcacgctggcaaat 4201
>gb|BC021055.1| Homo sapiens cDNA clone IMAGE:2822943, **** WARNING: chimeric clone **** Length = 4821 Score = 75.8 bits (38), Expect = 2e-10 Identities = 84/98 (85%), Gaps = 1/98 (1%) Strand = Plus / Minus Query: 544 catcaggaagagggatgtagataagctgatcaagacgccctggcctaagcagggcagggg 603 |||||||||| ||||||||||| |||||||||||||| || || || || | |||| || Sbjct: 2244 catcaggaagtgggatgtagatgagctgatcaagacggccaggtctgaggatggca-gga 2186 Query: 604 tctatgatgtctggcctgttggtagcaccaatgatgaa 641 || |||||||| |||| ||||||||| ||||||||||| Sbjct: 2185 tcaatgatgtcaggccggttggtagcgccaatgatgaa 2148 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 404 cttgcaagcacgctggcaaat 424 ||||||||||||||||||||| Sbjct: 2384 cttgcaagcacgctggcaaat 2364
>ref|NM_007126.2| Homo sapiens valosin-containing protein (VCP), mRNA Length = 3198 Score = 75.8 bits (38), Expect = 2e-10 Identities = 84/98 (85%), Gaps = 1/98 (1%) Strand = Plus / Minus Query: 544 catcaggaagagggatgtagataagctgatcaagacgccctggcctaagcagggcagggg 603 |||||||||| ||||||||||| |||||||||||||| || || || || | |||| || Sbjct: 2160 catcaggaagtgggatgtagatgagctgatcaagacggccaggtctgaggatggca-gga 2102 Query: 604 tctatgatgtctggcctgttggtagcaccaatgatgaa 641 || |||||||| |||| ||||||||| ||||||||||| Sbjct: 2101 tcaatgatgtcaggccggttggtagcgccaatgatgaa 2064 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 404 cttgcaagcacgctggcaaat 424 ||||||||||||||||||||| Sbjct: 2300 cttgcaagcacgctggcaaat 2280
>gb|BC096751.1| Homo sapiens cDNA clone IMAGE:5296598, containing frame-shift errors Length = 2894 Score = 75.8 bits (38), Expect = 2e-10 Identities = 84/98 (85%), Gaps = 1/98 (1%) Strand = Plus / Minus Query: 544 catcaggaagagggatgtagataagctgatcaagacgccctggcctaagcagggcagggg 603 |||||||||| ||||||||||| |||||||||||||| || || || || | |||| || Sbjct: 2196 catcaggaagtgggatgtagatgagctgatcaagacggccaggtctgaggatggca-gga 2138 Query: 604 tctatgatgtctggcctgttggtagcaccaatgatgaa 641 || |||||||| |||| ||||||||| ||||||||||| Sbjct: 2137 tcaatgatgtcaggccggttggtagcgccaatgatgaa 2100 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 404 cttgcaagcacgctggcaaat 424 ||||||||||||||||||||| Sbjct: 2336 cttgcaagcacgctggcaaat 2316
>emb|AL353795.13| Human DNA sequence from clone RP11-182N22 on chromosome 9 Contains a novel gene, the VCP gene for valosin-containing protein, the FANCG gene for Fanconi anemia, complementation group G (FAG, XRCC9), the gene for phosphatidylinositol glycan class O (PIGO), a novel gene, the STOML2 gene for stomatin (EPB72)-like 2 (SLP-2), a novel gene (KIAA1539) (FLJ11560), a zinc finger protein pseudogene, the 5' end of the UNC13 gene for unc-13-like (C. elegans) (hmunc13) and nine CpG islands, complete sequence Length = 195102 Score = 75.8 bits (38), Expect = 2e-10 Identities = 84/98 (85%), Gaps = 1/98 (1%) Strand = Plus / Plus Query: 544 catcaggaagagggatgtagataagctgatcaagacgccctggcctaagcagggcagggg 603 |||||||||| ||||||||||| |||||||||||||| || || || || | |||| || Sbjct: 29266 catcaggaagtgggatgtagatgagctgatcaagacggccaggtctgaggatggca-gga 29324 Query: 604 tctatgatgtctggcctgttggtagcaccaatgatgaa 641 || |||||||| |||| ||||||||| ||||||||||| Sbjct: 29325 tcaatgatgtcaggccggttggtagcgccaatgatgaa 29362 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 404 cttgcaagcacgctggcaaat 424 ||||||||||||||||||||| Sbjct: 28853 cttgcaagcacgctggcaaat 28873
>emb|AL137377.1|HSM802065 Homo sapiens mRNA; cDNA DKFZp434K0126 (from clone DKFZp434K0126) Length = 1862 Score = 75.8 bits (38), Expect = 2e-10 Identities = 84/98 (85%), Gaps = 1/98 (1%) Strand = Plus / Minus Query: 544 catcaggaagagggatgtagataagctgatcaagacgccctggcctaagcagggcagggg 603 |||||||||| ||||||||||| |||||||||||||| || || || || | |||| || Sbjct: 823 catcaggaagtgggatgtagatgagctgatcaagacggccaggtctgaggatggca-gga 765 Query: 604 tctatgatgtctggcctgttggtagcaccaatgatgaa 641 || |||||||| |||| ||||||||| ||||||||||| Sbjct: 764 tcaatgatgtcaggccggttggtagcgccaatgatgaa 727 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 404 cttgcaagcacgctggcaaat 424 ||||||||||||||||||||| Sbjct: 963 cttgcaagcacgctggcaaat 943
>emb|CR606334.1| full-length cDNA clone CS0DM007YL14 of Fetal liver of Homo sapiens (human) Length = 2858 Score = 75.8 bits (38), Expect = 2e-10 Identities = 84/98 (85%), Gaps = 1/98 (1%) Strand = Plus / Minus Query: 544 catcaggaagagggatgtagataagctgatcaagacgccctggcctaagcagggcagggg 603 |||||||||| ||||||||||| |||||||||||||| || || || || | |||| || Sbjct: 2187 catcaggaagtgggatgtagatgagctgatcaagacggccaggtctgaggatggca-gga 2129 Query: 604 tctatgatgtctggcctgttggtagcaccaatgatgaa 641 || |||||||| |||| ||||||||| ||||||||||| Sbjct: 2128 tcaatgatgtcaggccggttggtagcgccaatgatgaa 2091 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 404 cttgcaagcacgctggcaaat 424 ||||||||||||||||||||| Sbjct: 2331 cttgcaagcacgctggcaaat 2311
>gb|AC004472.1|AC004472 Homo sapiens chromosome 9, P1 clone 11659, complete sequence Length = 86765 Score = 75.8 bits (38), Expect = 2e-10 Identities = 84/98 (85%), Gaps = 1/98 (1%) Strand = Plus / Plus Query: 544 catcaggaagagggatgtagataagctgatcaagacgccctggcctaagcagggcagggg 603 |||||||||| ||||||||||| |||||||||||||| || || || || | |||| || Sbjct: 39456 catcaggaagtgggatgtagatgagctgatcaagacggccaggtctgaggatggca-gga 39514 Query: 604 tctatgatgtctggcctgttggtagcaccaatgatgaa 641 || |||||||| |||| ||||||||| ||||||||||| Sbjct: 39515 tcaatgatgtcaggccggttggtagcgccaatgatgaa 39552 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 404 cttgcaagcacgctggcaaat 424 ||||||||||||||||||||| Sbjct: 39043 cttgcaagcacgctggcaaat 39063
>gb|AF100752.1|AF100752 Homo sapiens transitional endoplasmic reticulum ATPase mRNA, complete cds Length = 2887 Score = 75.8 bits (38), Expect = 2e-10 Identities = 84/98 (85%), Gaps = 1/98 (1%) Strand = Plus / Minus Query: 544 catcaggaagagggatgtagataagctgatcaagacgccctggcctaagcagggcagggg 603 |||||||||| ||||||||||| |||||||||||||| || || || || | |||| || Sbjct: 2160 catcaggaagtgggatgtagatgagctgatcaagacggccaggtctgaggatggca-gga 2102 Query: 604 tctatgatgtctggcctgttggtagcaccaatgatgaa 641 || |||||||| |||| ||||||||| ||||||||||| Sbjct: 2101 tcaatgatgtcaggccggttggtagcgccaatgatgaa 2064 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 404 cttgcaagcacgctggcaaat 424 ||||||||||||||||||||| Sbjct: 2300 cttgcaagcacgctggcaaat 2280
>gb|BC110913.1| Homo sapiens valosin-containing protein, mRNA (cDNA clone MGC:131997 IMAGE:6502535), complete cds Length = 3212 Score = 75.8 bits (38), Expect = 2e-10 Identities = 84/98 (85%), Gaps = 1/98 (1%) Strand = Plus / Minus Query: 544 catcaggaagagggatgtagataagctgatcaagacgccctggcctaagcagggcagggg 603 |||||||||| ||||||||||| |||||||||||||| || || || || | |||| || Sbjct: 2147 catcaggaagtgggatgtagatgagctgatcaagacggccaggtctgaggatggca-gga 2089 Query: 604 tctatgatgtctggcctgttggtagcaccaatgatgaa 641 || |||||||| |||| ||||||||| ||||||||||| Sbjct: 2088 tcaatgatgtcaggccggttggtagcgccaatgatgaa 2051 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 404 cttgcaagcacgctggcaaat 424 ||||||||||||||||||||| Sbjct: 2287 cttgcaagcacgctggcaaat 2267
>ref|NM_120412.2| Arabidopsis thaliana ATP binding / ATPase/ hydrolase/ nucleoside-triphosphatase/ nucleotide binding AT5G03340 mRNA, complete cds Length = 2671 Score = 73.8 bits (37), Expect = 7e-10 Identities = 97/117 (82%) Strand = Plus / Minus Query: 201 tgctgcagcgtctgggcaaaggcctggtacttgcggatgtcggcgtcactcacactacga 260 |||||||||||||| ||||| || ||||||||||| || || || ||||||||||| | Sbjct: 2398 tgctgcagcgtctgagcaaaagcttggtacttgcgaatatcagcatcactcacacttctc 2339 Query: 261 cgcgcatacttcatcgactcctcgaagtgggcagccctgatctctgcaacctcatca 317 | ||||| ||||||||||| ||||| || ||||| || ||||||| ||| |||||| Sbjct: 2338 cttgcatatttcatcgactcttcgaaatgagcagctctaatctctgaaacttcatca 2282 Score = 65.9 bits (33), Expect = 2e-07 Identities = 75/89 (84%) Strand = Plus / Minus Query: 375 tccttctcgatgttctccctgatggcatacttgcaagcacgctggcaaatttcagtgata 434 ||||| |||||||| || |||||||| ||||||||||| | |||||| || || |||||| Sbjct: 2221 tccttttcgatgttttctctgatggcgtacttgcaagctctctggcagatctcggtgata 2162 Query: 435 tcagcaacgctgaacccttgggtgtactt 463 |||||| | ||||| || || |||||||| Sbjct: 2161 tcagcaccactgaatccctgagtgtactt 2133 Score = 40.1 bits (20), Expect = 9.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 544 catcaggaagagggatgtagataagctg 571 ||||||| ||||| |||||||||||||| Sbjct: 2052 catcaggtagaggaatgtagataagctg 2025
>emb|AL162751.1|ATF12E4 Arabidopsis thaliana DNA chromosome 5, BAC clone F12E4 (ESSA project) Length = 121552 Score = 73.8 bits (37), Expect = 7e-10 Identities = 97/117 (82%) Strand = Plus / Plus Query: 201 tgctgcagcgtctgggcaaaggcctggtacttgcggatgtcggcgtcactcacactacga 260 |||||||||||||| ||||| || ||||||||||| || || || ||||||||||| | Sbjct: 24032 tgctgcagcgtctgagcaaaagcttggtacttgcgaatatcagcatcactcacacttctc 24091 Query: 261 cgcgcatacttcatcgactcctcgaagtgggcagccctgatctctgcaacctcatca 317 | ||||| ||||||||||| ||||| || ||||| || ||||||| ||| |||||| Sbjct: 24092 cttgcatatttcatcgactcttcgaaatgagcagctctaatctctgaaacttcatca 24148 Score = 63.9 bits (32), Expect = 6e-07 Identities = 74/88 (84%) Strand = Plus / Plus Query: 376 ccttctcgatgttctccctgatggcatacttgcaagcacgctggcaaatttcagtgatat 435 |||| |||||||| || |||||||| ||||||||||| | |||||| || || ||||||| Sbjct: 24316 ccttttcgatgttttctctgatggcgtacttgcaagctctctggcagatctcggtgatat 24375 Query: 436 cagcaacgctgaacccttgggtgtactt 463 ||||| | ||||| || || |||||||| Sbjct: 24376 cagcaccactgaatccctgagtgtactt 24403 Score = 40.1 bits (20), Expect = 9.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 544 catcaggaagagggatgtagataagctg 571 ||||||| ||||| |||||||||||||| Sbjct: 24484 catcaggtagaggaatgtagataagctg 24511
>gb|BT006485.1| Arabidopsis thaliana At5g03340 gene, complete cds Length = 2433 Score = 73.8 bits (37), Expect = 7e-10 Identities = 97/117 (82%) Strand = Plus / Minus Query: 201 tgctgcagcgtctgggcaaaggcctggtacttgcggatgtcggcgtcactcacactacga 260 |||||||||||||| ||||| || ||||||||||| || || || ||||||||||| | Sbjct: 2303 tgctgcagcgtctgagcaaaagcttggtacttgcgaatatcagcatcactcacacttctc 2244 Query: 261 cgcgcatacttcatcgactcctcgaagtgggcagccctgatctctgcaacctcatca 317 | ||||| ||||||||||| ||||| || ||||| || ||||||| ||| |||||| Sbjct: 2243 cttgcatatttcatcgactcttcgaaatgagcagctctaatctctgaaacttcatca 2187 Score = 65.9 bits (33), Expect = 2e-07 Identities = 75/89 (84%) Strand = Plus / Minus Query: 375 tccttctcgatgttctccctgatggcatacttgcaagcacgctggcaaatttcagtgata 434 ||||| |||||||| || |||||||| ||||||||||| | |||||| || || |||||| Sbjct: 2126 tccttttcgatgttttctctgatggcgtacttgcaagctctctggcagatctcggtgata 2067 Query: 435 tcagcaacgctgaacccttgggtgtactt 463 |||||| | ||||| || || |||||||| Sbjct: 2066 tcagcaccactgaatccctgagtgtactt 2038 Score = 40.1 bits (20), Expect = 9.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 544 catcaggaagagggatgtagataagctg 571 ||||||| ||||| |||||||||||||| Sbjct: 1957 catcaggtagaggaatgtagataagctg 1930
>dbj|AK118571.1| Arabidopsis thaliana At5g03340 mRNA for putative transitional endoplasmic reticulum ATPase, complete cds, clone: RAFL19-80-L03 Length = 2671 Score = 73.8 bits (37), Expect = 7e-10 Identities = 97/117 (82%) Strand = Plus / Minus Query: 201 tgctgcagcgtctgggcaaaggcctggtacttgcggatgtcggcgtcactcacactacga 260 |||||||||||||| ||||| || ||||||||||| || || || ||||||||||| | Sbjct: 2398 tgctgcagcgtctgagcaaaagcttggtacttgcgaatatcagcatcactcacacttctc 2339 Query: 261 cgcgcatacttcatcgactcctcgaagtgggcagccctgatctctgcaacctcatca 317 | ||||| ||||||||||| ||||| || ||||| || ||||||| ||| |||||| Sbjct: 2338 cttgcatatttcatcgactcttcgaaatgagcagctctaatctctgaaacttcatca 2282 Score = 65.9 bits (33), Expect = 2e-07 Identities = 75/89 (84%) Strand = Plus / Minus Query: 375 tccttctcgatgttctccctgatggcatacttgcaagcacgctggcaaatttcagtgata 434 ||||| |||||||| || |||||||| ||||||||||| | |||||| || || |||||| Sbjct: 2221 tccttttcgatgttttctctgatggcgtacttgcaagctctctggcagatctcggtgata 2162 Query: 435 tcagcaacgctgaacccttgggtgtactt 463 |||||| | ||||| || || |||||||| Sbjct: 2161 tcagcaccactgaatccctgagtgtactt 2133 Score = 40.1 bits (20), Expect = 9.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 544 catcaggaagagggatgtagataagctg 571 ||||||| ||||| |||||||||||||| Sbjct: 2052 catcaggtagaggaatgtagataagctg 2025
>dbj|AK117125.1| Arabidopsis thaliana At5g03340 mRNA for putative transitional endoplasmic reticulum ATPase, complete cds, clone: RAFL16-66-D01 Length = 2664 Score = 73.8 bits (37), Expect = 7e-10 Identities = 97/117 (82%) Strand = Plus / Minus Query: 201 tgctgcagcgtctgggcaaaggcctggtacttgcggatgtcggcgtcactcacactacga 260 |||||||||||||| ||||| || ||||||||||| || || || ||||||||||| | Sbjct: 2391 tgctgcagcgtctgagcaaaagcttggtacttgcgaatatcagcatcactcacacttctc 2332 Query: 261 cgcgcatacttcatcgactcctcgaagtgggcagccctgatctctgcaacctcatca 317 | ||||| ||||||||||| ||||| || ||||| || ||||||| ||| |||||| Sbjct: 2331 cttgcatatttcatcgactcttcgaaatgagcagctctaatctctgaaacttcatca 2275 Score = 65.9 bits (33), Expect = 2e-07 Identities = 75/89 (84%) Strand = Plus / Minus Query: 375 tccttctcgatgttctccctgatggcatacttgcaagcacgctggcaaatttcagtgata 434 ||||| |||||||| || |||||||| ||||||||||| | |||||| || || |||||| Sbjct: 2214 tccttttcgatgttttctctgatggcgtacttgcaagctctctggcagatctcggtgata 2155 Query: 435 tcagcaacgctgaacccttgggtgtactt 463 |||||| | ||||| || || |||||||| Sbjct: 2154 tcagcaccactgaatccctgagtgtactt 2126 Score = 40.1 bits (20), Expect = 9.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 544 catcaggaagagggatgtagataagctg 571 ||||||| ||||| |||||||||||||| Sbjct: 2045 catcaggtagaggaatgtagataagctg 2018
>gb|BT014585.1| Lycopersicon esculentum clone 134043F, mRNA sequence Length = 2708 Score = 71.9 bits (36), Expect = 3e-09 Identities = 250/320 (78%), Gaps = 1/320 (0%) Strand = Plus / Minus Query: 361 tctccctctcgatgtccttctcgatgttctccctgatggcatacttgcaagcacgctggc 420 ||||||| || || || ||||| ||||||||||| |||||||| ||||| | || || | Sbjct: 2214 tctccctttctatatctttctctatgttctcccttatggcatatttgcaggatcgttgac 2155 Query: 421 aaatttcagtgatatcagcaacgctgaacccttgggtgtacttggcaagagcactcagat 480 |||| |||||||||||||| | || || ||||| || | ||||| ||||| ||||||| Sbjct: 2154 aaatctcagtgatatcagccccactaaatccttgagtatgtttggcgagagctctcagat 2095 Query: 481 caatatccttggccaaaggagacttcctgaggcaagctttgaagatctggtgcctcgaat 540 |||||||||| | || || || || ||||| || || ||||| ||||| || | |||| Sbjct: 2094 caatatcctttgataagggggattttctgagacatgccttgaaaatctgatggcgtgaat 2035 Query: 541 cgacatcaggaagagggatgtagataagctgatcaagacgccctggcctaagcagggcag 600 | |||| || ||||| || || || | ||| |||||||| || || | ||| || ||| Sbjct: 2034 cttcatctggcagaggaatataaattaactggtcaagacggccaggtcgaagaagtgca- 1976 Query: 601 gggtctatgatgtctggcctgttggtagcaccaatgatgaagacggttttcttagcattc 660 ||||| || || || |||||||| || || ||||| || || || || ||||| |||||| Sbjct: 1975 gggtcaattatatcaggcctgtttgtggccccaattataaaaacagtcttctttgcattc 1916 Query: 661 atgccatccatctcagtcag 680 ||||||||||| |||||||| Sbjct: 1915 atgccatccatttcagtcag 1896 Score = 58.0 bits (29), Expect = 4e-05 Identities = 77/93 (82%) Strand = Plus / Minus Query: 197 agactgctgcagcgtctgggcaaaggcctggtacttgcggatgtcggcgtcactcacact 256 ||||||||| | ||||| ||||| |||||||| ||||| || || || || || ||||| Sbjct: 2375 agactgctgtaatgtctgagcaaatgcctggtatttgcgtatatcagcatcgctgacact 2316 Query: 257 acgacgcgcatacttcatcgactcctcgaagtg 289 ||||| ||||||||||| |||||||| ||||| Sbjct: 2315 ccgacgggcatacttcatagactcctcaaagtg 2283
>emb|Y09396.1|CACAFP C.annuum mRNA for CDC48p-like protein Length = 2682 Score = 71.9 bits (36), Expect = 3e-09 Identities = 363/470 (77%), Gaps = 4/470 (0%) Strand = Plus / Minus Query: 210 gtctgggcaaaggcctggtacttgcggatgtcggcgtcactcacactacgacgcgcatac 269 ||||| ||||| |||||||| ||||| || || || ||||| |||||||| || |||||| Sbjct: 2327 gtctgagcaaatgcctggtatttgcgtatatcagcatcactgacactacgtcgtgcatac 2268 Query: 270 ttcatcgactcctcgaagtgggcagccctgatctctgcaacctcatcaacctcgtcctcc 329 ||||| || |||||||| || || | | ||||||||| || ||||| || || || ||| Sbjct: 2267 ttcatagattcctcgaaatgagcgggcttgatctctggtacttcatcgacatcttcatcc 2208 Query: 330 tccatcgcttcagggttgtccttcctccgcctctccctctcgatgtccttctcgatgttc 389 || | |||||||| |||| || | | ||||||| || ||||| ||||| |||||| Sbjct: 2207 ---attgaatcagggttttcctgtcttctcttctccctttctatgtctttctctatgttc 2151 Query: 390 tccctgatggcatacttgcaagcacgctggcaaatttcagtgatatcagcaacgctgaac 449 ||||| |||||||| ||||| || || || ||||| ||||||| |||||| | || || Sbjct: 2150 tccctaatggcatatttgcaggctcgttgacaaatctcagtgacatcagccccactaaat 2091 Query: 450 ccttgggtgtacttggcaagagcactcagatcaatatccttggccaaaggagacttcctg 509 || || || | ||||| ||||| |||| |||||||||||| | || || || || ||| Sbjct: 2090 ccctgagtatgtttggcgagagctctcaaatcaatatcctttgataagggggattttctg 2031 Query: 510 aggcaagctttgaagatctggtgcctcgaatcgacatcaggaagagggatgtagataagc 569 ||||| || ||||| ||||| || | ||||| |||| || ||||| || || || | | Sbjct: 2030 aggcatgccttgaaaatctgatggcgtgaatcctcatctggtagaggaatataaattaac 1971 Query: 570 tgatcaagacgccctggcctaagcagggcaggggtctatgatgtctggcctgttggtagc 629 ||||||||||| || || | || || |||||| || || || || || ||||| || || Sbjct: 1970 tgatcaagacggccaggacgcagaagtgcaggg-tcaattatatcaggtctgtttgtggc 1912 Query: 630 accaatgatgaagacggttttcttagcattcatgccatccatctcagtca 679 ||||| || || || || ||||| ||||||||||||||||| ||||||| Sbjct: 1911 cccaataataaaaacagtcttctttgcattcatgccatccatttcagtca 1862
>ref|XM_567564.1| Cryptococcus neoformans var. neoformans JEC21 MMS2 (CNJ02750) partial mRNA Length = 2673 Score = 67.9 bits (34), Expect = 4e-08 Identities = 55/62 (88%) Strand = Plus / Minus Query: 616 ggcctgttggtagcaccaatgatgaagacggttttcttagcattcatgccatccatctca 675 |||||||||||||||||||||||||||||| | ||||| || ||||| || ||||| ||| Sbjct: 1997 ggcctgttggtagcaccaatgatgaagacgttcttcttcgcgttcataccgtccatttca 1938 Query: 676 gt 677 || Sbjct: 1937 gt 1936 Score = 42.1 bits (21), Expect = 2.4 Identities = 27/29 (93%) Strand = Plus / Minus Query: 555 gggatgtagataagctgatcaagacgccc 583 ||||||||||| ||||||||||| ||||| Sbjct: 2057 gggatgtagatcagctgatcaagtcgccc 2029
>gb|AF313486.1|AF313485S2 Homo sapiens tissue-type kidney valosin-containing protein mRNA, partial cds Length = 1303 Score = 67.9 bits (34), Expect = 4e-08 Identities = 83/98 (84%), Gaps = 1/98 (1%) Strand = Plus / Minus Query: 544 catcaggaagagggatgtagataagctgatcaagacgccctggcctaagcagggcagggg 603 |||||||||| ||||||||||| ||||||||| |||| || || || || | |||| || Sbjct: 834 catcaggaagtgggatgtagatgagctgatcaggacggccaggtctgaggatggca-gga 776 Query: 604 tctatgatgtctggcctgttggtagcaccaatgatgaa 641 || |||||||| |||| ||||||||| ||||||||||| Sbjct: 775 tcaatgatgtcaggccggttggtagcgccaatgatgaa 738 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 404 cttgcaagcacgctggcaaat 424 ||||||||||||||||||||| Sbjct: 973 cttgcaagcacgctggcaaat 953
>ref|XM_424984.1| PREDICTED: Gallus gallus similar to valosin precursor (LOC427410), mRNA Length = 2303 Score = 65.9 bits (33), Expect = 2e-07 Identities = 39/41 (95%) Strand = Plus / Minus Query: 601 gggtctatgatgtctggcctgttggtagcaccaatgatgaa 641 ||||| |||||||||||||||||||||||||| |||||||| Sbjct: 1930 gggtcaatgatgtctggcctgttggtagcaccgatgatgaa 1890
>gb|BT012783.1| Lycopersicon esculentum clone 113773R, mRNA sequence Length = 2684 Score = 65.9 bits (33), Expect = 2e-07 Identities = 81/97 (83%) Strand = Plus / Minus Query: 210 gtctgggcaaaggcctggtacttgcggatgtcggcgtcactcacactacgacgcgcatac 269 ||||| ||||| |||||||| || || || ||||| ||||||||||| || || |||||| Sbjct: 2340 gtctgagcaaatgcctggtatttacgaatatcggcatcactcacacttcgtcgtgcatac 2281 Query: 270 ttcatcgactcctcgaagtgggcagccctgatctctg 306 ||||| |||||||| || || |||| | ||||||||| Sbjct: 2280 ttcatggactcctcaaaatgagcaggcttgatctctg 2244 Score = 58.0 bits (29), Expect = 4e-05 Identities = 56/65 (86%) Strand = Plus / Minus Query: 616 ggcctgttggtagcaccaatgatgaagacggttttcttagcattcatgccatccatctca 675 |||||||| || || ||||| || || || |||||||| ||||||||||||||||| ||| Sbjct: 1935 ggcctgtttgtggccccaataataaaaacagttttctttgcattcatgccatccatttca 1876 Query: 676 gtcag 680 ||||| Sbjct: 1875 gtcag 1871 Score = 44.1 bits (22), Expect = 0.60 Identities = 88/110 (80%) Strand = Plus / Minus Query: 378 ttctcgatgttctccctgatggcatacttgcaagcacgctggcaaatttcagtgatatca 437 ||||| || |||||||| |||||||| ||||| || || || || || ||||||||||| Sbjct: 2172 ttctcaatattctcccttatggcatatttgcaggcccgttgacagatctcagtgatatcg 2113 Query: 438 gcaacgctgaacccttgggtgtacttggcaagagcactcagatcaatatc 487 || | || || || || || || ||||||||||| |||| ||||||||| Sbjct: 2112 gctccactaaatccctgagtatatttggcaagagctctcaaatcaatatc 2063
>emb|AJ719285.1| Gallus gallus mRNA for hypothetical protein, clone 1c3 Length = 2934 Score = 65.9 bits (33), Expect = 2e-07 Identities = 39/41 (95%) Strand = Plus / Minus Query: 601 gggtctatgatgtctggcctgttggtagcaccaatgatgaa 641 ||||| |||||||||||||||||||||||||| |||||||| Sbjct: 2044 gggtcaatgatgtctggcctgttggtagcaccgatgatgaa 2004
>dbj|AB195711.1| Gallus gallus vcp mRNA for valosin containing protein, complete cds Length = 2916 Score = 65.9 bits (33), Expect = 2e-07 Identities = 39/41 (95%) Strand = Plus / Minus Query: 601 gggtctatgatgtctggcctgttggtagcaccaatgatgaa 641 ||||| |||||||||||||||||||||||||| |||||||| Sbjct: 1994 gggtcaatgatgtctggcctgttggtagcaccgatgatgaa 1954
>ref|XM_428317.1| PREDICTED: Gallus gallus similar to valosin precursor (LOC430766), partial mRNA Length = 1516 Score = 63.9 bits (32), Expect = 6e-07 Identities = 41/44 (93%) Strand = Plus / Minus Query: 601 gggtctatgatgtctggcctgttggtagcaccaatgatgaagac 644 ||||| |||||||||||||||||||| ||||| ||||||||||| Sbjct: 991 gggtcaatgatgtctggcctgttggtggcaccgatgatgaagac 948
>ref|XM_631818.1| Dictyostelium discoideum cell division cycle protein 48 (DDB0191154), partial mRNA Length = 2382 Score = 61.9 bits (31), Expect = 3e-06 Identities = 61/71 (85%) Strand = Plus / Minus Query: 607 atgatgtctggcctgttggtagcaccaatgatgaagacggttttcttagcattcatgcca 666 ||||| ||||| || |||||||||||||||||||| ||| | ||||| || ||||| ||| Sbjct: 1880 atgatatctggtctattggtagcaccaatgatgaaaacgttcttcttggcgttcatacca 1821 Query: 667 tccatctcagt 677 ||||| ||||| Sbjct: 1820 tccatttcagt 1810
>gb|U83085.2|DDU83085 Dictyostelium discoideum cell division cycle protein 48 (cdcD) mRNA, complete cds Length = 2517 Score = 61.9 bits (31), Expect = 3e-06 Identities = 61/71 (85%) Strand = Plus / Minus Query: 607 atgatgtctggcctgttggtagcaccaatgatgaagacggttttcttagcattcatgcca 666 ||||| ||||| || |||||||||||||||||||| ||| | ||||| || ||||| ||| Sbjct: 1905 atgatatctggtctattggtagcaccaatgatgaaaacgttcttcttggcgttcatacca 1846 Query: 667 tccatctcagt 677 ||||| ||||| Sbjct: 1845 tccatttcagt 1835
>gb|AE017350.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 10, complete sequence Length = 1085720 Score = 60.0 bits (30), Expect = 1e-05 Identities = 30/30 (100%) Strand = Plus / Minus Query: 616 ggcctgttggtagcaccaatgatgaagacg 645 |||||||||||||||||||||||||||||| Sbjct: 795676 ggcctgttggtagcaccaatgatgaagacg 795647
>ref|NM_201481.1| Danio rerio valosin containing protein (vcp), mRNA Length = 2659 Score = 58.0 bits (29), Expect = 4e-05 Identities = 41/45 (91%) Strand = Plus / Minus Query: 601 gggtctatgatgtctggcctgttggtagcaccaatgatgaagacg 645 ||||| ||||||||||| |||||||| || ||||||||||||||| Sbjct: 1986 gggtcaatgatgtctggtctgttggtggccccaatgatgaagacg 1942
>gb|BC067384.1| Danio rerio valosin containing protein, mRNA (cDNA clone MGC:77072 IMAGE:6960180), complete cds Length = 2635 Score = 58.0 bits (29), Expect = 4e-05 Identities = 41/45 (91%) Strand = Plus / Minus Query: 601 gggtctatgatgtctggcctgttggtagcaccaatgatgaagacg 645 ||||| ||||||||||| |||||||| || ||||||||||||||| Sbjct: 1962 gggtcaatgatgtctggtctgttggtggccccaatgatgaagacg 1918
>gb|AY576993.1| Danio rerio clone RK103A4E09 valosin-containing protein mRNA, complete cds Length = 2657 Score = 58.0 bits (29), Expect = 4e-05 Identities = 41/45 (91%) Strand = Plus / Minus Query: 601 gggtctatgatgtctggcctgttggtagcaccaatgatgaagacg 645 ||||| ||||||||||| |||||||| || ||||||||||||||| Sbjct: 2023 gggtcaatgatgtctggtctgttggtggccccaatgatgaagacg 1979
>emb|BX028305.1|CNS08U05 Single read from an extremity of a full-length cDNA clone made from Anopheles gambiae total adult females. 3-PRIME end of clone FK0AAA42BC03 of strain 6-9 of Anopheles gambiae (African malaria mosquito) Length = 1003 Score = 58.0 bits (29), Expect = 4e-05 Identities = 50/57 (87%) Strand = Plus / Plus Query: 186 ccgaatccacgagactgctgcagcgtctgggcaaaggcctggtacttgcggatgtcg 242 |||||||||||||| ||||||||||| |||||||| | |||||||||||||||| Sbjct: 831 ccgaatccacgagattgctgcagcgtttgggcaaacatttcgtacttgcggatgtcg 887
>emb|BX027063.1|CNS08T1N Single read from an extremity of a full-length cDNA clone made from Anopheles gambiae total adult females. 3-PRIME end of clone FK0AAA40CD02 of strain 6-9 of Anopheles gambiae (African malaria mosquito) Length = 1007 Score = 58.0 bits (29), Expect = 4e-05 Identities = 50/57 (87%) Strand = Plus / Plus Query: 186 ccgaatccacgagactgctgcagcgtctgggcaaaggcctggtacttgcggatgtcg 242 |||||||||||||| ||||||||||| |||||||| | |||||||||||||||| Sbjct: 838 ccgaatccacgagattgctgcagcgtttgggcaaacatttcgtacttgcggatgtcg 894
>emb|CR735112.10| Zebrafish DNA sequence from clone CH211-222C11 in linkage group 5, complete sequence Length = 156543 Score = 58.0 bits (29), Expect = 4e-05 Identities = 41/45 (91%) Strand = Plus / Plus Query: 601 gggtctatgatgtctggcctgttggtagcaccaatgatgaagacg 645 ||||| ||||||||||| |||||||| || ||||||||||||||| Sbjct: 149283 gggtcaatgatgtctggtctgttggtggccccaatgatgaagacg 149327
>emb|CR318632.9| Zebrafish DNA sequence from clone CH211-113N10 in linkage group 5, complete sequence Length = 143278 Score = 58.0 bits (29), Expect = 4e-05 Identities = 41/45 (91%) Strand = Plus / Minus Query: 601 gggtctatgatgtctggcctgttggtagcaccaatgatgaagacg 645 ||||| ||||||||||| |||||||| || ||||||||||||||| Sbjct: 133399 gggtcaatgatgtctggtctgttggtggccccaatgatgaagacg 133355
>ref|XM_692759.1| PREDICTED: Danio rerio similar to Valosin containing protein (LOC569377), mRNA Length = 1747 Score = 58.0 bits (29), Expect = 4e-05 Identities = 41/45 (91%) Strand = Plus / Minus Query: 601 gggtctatgatgtctggcctgttggtagcaccaatgatgaagacg 645 ||||| ||||||||||| |||||||| || ||||||||||||||| Sbjct: 725 gggtcaatgatgtctggtctgttggtggccccaatgatgaagacg 681
>dbj|AB093594.1| Danio rerio CDC48 mRNA, partial cds Length = 2418 Score = 58.0 bits (29), Expect = 4e-05 Identities = 41/45 (91%) Strand = Plus / Minus Query: 601 gggtctatgatgtctggcctgttggtagcaccaatgatgaagacg 645 ||||| ||||||||||| |||||||| || ||||||||||||||| Sbjct: 1892 gggtcaatgatgtctggtctgttggtggccccaatgatgaagacg 1848
>ref|XM_315644.2| Anopheles gambiae str. PEST ENSANGP00000022801 (ENSANGG00000019258), partial mRNA Length = 2559 Score = 58.0 bits (29), Expect = 4e-05 Identities = 50/57 (87%) Strand = Plus / Minus Query: 186 ccgaatccacgagactgctgcagcgtctgggcaaaggcctggtacttgcggatgtcg 242 |||||||||||||| ||||||||||| |||||||| | |||||||||||||||| Sbjct: 2300 ccgaatccacgagattgctgcagcgtttgggcaaacatttcgtacttgcggatgtcg 2244
>gb|BC050488.1| Danio rerio valosin containing protein, mRNA (cDNA clone MGC:56043 IMAGE:3820156), complete cds Length = 2659 Score = 58.0 bits (29), Expect = 4e-05 Identities = 41/45 (91%) Strand = Plus / Minus Query: 601 gggtctatgatgtctggcctgttggtagcaccaatgatgaagacg 645 ||||| ||||||||||| |||||||| || ||||||||||||||| Sbjct: 1986 gggtcaatgatgtctggtctgttggtggccccaatgatgaagacg 1942
>emb|Z74174.1|SCYDL126C S.cerevisiae chromosome IV reading frame ORF YDL126c Length = 3251 Score = 54.0 bits (27), Expect = 6e-04 Identities = 51/59 (86%) Strand = Plus / Plus Query: 613 tctggcctgttggtagcaccaatgatgaagacggttttcttagcattcatgccatccat 671 |||||||| ||||| |||||||| | ||| || |||||||||||||||| |||||||| Sbjct: 988 tctggcctattggtggcaccaatcacgaacacatttttcttagcattcataccatccat 1046
>emb|X56956.1|SCCDC48 S. cerevisiae CDC48 gene for cell cycle protein CDC48p Length = 6485 Score = 54.0 bits (27), Expect = 6e-04 Identities = 51/59 (86%) Strand = Plus / Minus Query: 613 tctggcctgttggtagcaccaatgatgaagacggttttcttagcattcatgccatccat 671 |||||||| ||||| |||||||| | ||| || |||||||||||||||| |||||||| Sbjct: 3885 tctggcctattggtggcaccaatcacgaacacatttttcttagcattcataccatccat 3827
>dbj|AB181225.1| Eisenia fetida evcp-1 mRNA for valosin containing protein-1, complete cds Length = 2932 Score = 54.0 bits (27), Expect = 6e-04 Identities = 66/79 (83%) Strand = Plus / Minus Query: 607 atgatgtctggcctgttggtagcaccaatgatgaagacggttttcttagcattcatgcca 666 |||||||| || ||||| || || ||||||||||| ||| | ||||| | |||| ||| Sbjct: 1995 atgatgtcaggtctgttcgtggctccaatgatgaacacgttcttctttgagctcattcca 1936 Query: 667 tccatctcagtcagcagct 685 ||||||||||||||||||| Sbjct: 1935 tccatctcagtcagcagct 1917
>gb|BC074716.1| Xenopus tropicalis valosin-containing protein, mRNA (cDNA clone MGC:69484 IMAGE:5336248), complete cds Length = 3258 Score = 52.0 bits (26), Expect = 0.002 Identities = 41/46 (89%) Strand = Plus / Minus Query: 600 ggggtctatgatgtctggcctgttggtagcaccaatgatgaagacg 645 |||||| || || |||||||||||||| || ||||||||||||||| Sbjct: 2006 ggggtcgataatatctggcctgttggtggctccaatgatgaagacg 1961
>ref|NM_001005677.1| Xenopus tropicalis valosin-containing protein (vcp), mRNA Length = 3258 Score = 52.0 bits (26), Expect = 0.002 Identities = 41/46 (89%) Strand = Plus / Minus Query: 600 ggggtctatgatgtctggcctgttggtagcaccaatgatgaagacg 645 |||||| || || |||||||||||||| || ||||||||||||||| Sbjct: 2006 ggggtcgataatatctggcctgttggtggctccaatgatgaagacg 1961
>ref|NM_214280.1| Sus scrofa valosin-containing protein (VCP), mRNA Length = 3147 Score = 52.0 bits (26), Expect = 0.002 Identities = 32/34 (94%) Strand = Plus / Minus Query: 544 catcaggaagagggatgtagataagctgatcaag 577 |||||||||| ||||||||||| ||||||||||| Sbjct: 2120 catcaggaagtgggatgtagatgagctgatcaag 2087
>gb|AY609417.1| Sus scrofa clone Clu_1080.scr.msk.p1.Contig5, mRNA sequence Length = 3968 Score = 52.0 bits (26), Expect = 0.002 Identities = 32/34 (94%) Strand = Plus / Minus Query: 544 catcaggaagagggatgtagataagctgatcaag 577 |||||||||| ||||||||||| ||||||||||| Sbjct: 2126 catcaggaagtgggatgtagatgagctgatcaag 2093
>gb|M30143.1|PIGVALA Pig valosin-containing protein (VCP) mRNA, complete cds Length = 3147 Score = 52.0 bits (26), Expect = 0.002 Identities = 32/34 (94%) Strand = Plus / Minus Query: 544 catcaggaagagggatgtagataagctgatcaag 577 |||||||||| ||||||||||| ||||||||||| Sbjct: 2120 catcaggaagtgggatgtagatgagctgatcaag 2087
>ref|XM_752110.1| Ustilago maydis 521 hypothetical protein (UM01056.1) partial mRNA Length = 2469 Score = 50.1 bits (25), Expect = 0.010 Identities = 25/25 (100%) Strand = Plus / Minus Query: 621 gttggtagcaccaatgatgaagacg 645 ||||||||||||||||||||||||| Sbjct: 1869 gttggtagcaccaatgatgaagacg 1845
>gb|BC049114.1| Mus musculus valosin containing protein, mRNA (cDNA clone MGC:61308 IMAGE:6810751), complete cds Length = 2876 Score = 48.1 bits (24), Expect = 0.038 Identities = 30/32 (93%) Strand = Plus / Minus Query: 607 atgatgtctggcctgttggtagcaccaatgat 638 |||||||| |||||||||||||| |||||||| Sbjct: 2163 atgatgtcaggcctgttggtagctccaatgat 2132
>ref|NM_009503.2| Mus musculus valosin containing protein (Vcp), mRNA Length = 3245 Score = 48.1 bits (24), Expect = 0.038 Identities = 30/32 (93%) Strand = Plus / Minus Query: 607 atgatgtctggcctgttggtagcaccaatgat 638 |||||||| |||||||||||||| |||||||| Sbjct: 2144 atgatgtcaggcctgttggtagctccaatgat 2113
>ref|XM_985571.1| PREDICTED: Mus musculus similar to Transitional endoplasmic reticulum ATPase (TER ATPase) (15S Mg(2+)-ATPase p97 subunit) (Valosin-containing protein) (VCP), transcript variant 1 (LOC675857), mRNA Length = 3257 Score = 48.1 bits (24), Expect = 0.038 Identities = 30/32 (93%) Strand = Plus / Minus Query: 607 atgatgtctggcctgttggtagcaccaatgat 638 |||||||| |||||||||||||| |||||||| Sbjct: 2144 atgatgtcaggcctgttggtagctccaatgat 2113
>ref|XM_752342.1| Ustilago maydis 521 hypothetical protein (UM01288.1) partial mRNA Length = 2853 Score = 48.1 bits (24), Expect = 0.038 Identities = 24/24 (100%) Strand = Plus / Minus Query: 319 cctcgtcctcctccatcgcttcag 342 |||||||||||||||||||||||| Sbjct: 1975 cctcgtcctcctccatcgcttcag 1952
>emb|Z14044.1|MMVALPRO M.musculus mRNA for valosin-containing protein Length = 3143 Score = 48.1 bits (24), Expect = 0.038 Identities = 30/32 (93%) Strand = Plus / Minus Query: 607 atgatgtctggcctgttggtagcaccaatgat 638 |||||||| |||||||||||||| |||||||| Sbjct: 2047 atgatgtcaggcctgttggtagctccaatgat 2016
>emb|Z49886.1|CEC06A1 Caenorhabditis elegans Cosmid C06A1, complete sequence Length = 20752 Score = 48.1 bits (24), Expect = 0.038 Identities = 30/32 (93%) Strand = Plus / Plus Query: 555 gggatgtagataagctgatcaagacgccctgg 586 ||||||||||||||||||||||| || ||||| Sbjct: 1903 gggatgtagataagctgatcaaggcgacctgg 1934
>emb|Z48334.1|CEF10B5 Caenorhabditis elegans Cosmid F10B5, complete sequence Length = 29132 Score = 48.1 bits (24), Expect = 0.038 Identities = 106/132 (80%), Gaps = 1/132 (0%) Strand = Plus / Minus Query: 546 tcaggaagagggatgtagataagctgatcaagacgccctggcctaagcagggcaggggtc 605 ||||||||||| |||||||| | |||||| ||||| ||||| | ||| | || || || Sbjct: 1494 tcaggaagaggaatgtagatcaactgatcgagacgtcctggacgaagaacagc-tggatc 1436 Query: 606 tatgatgtctggcctgttggtagcaccaatgatgaagacggttttcttagcattcatgcc 665 ||||| || || | |||||||| ||||| ||||| ||| ||||||| |||||||| || Sbjct: 1435 aatgatatcaggacgattggtagctccaataatgaacacgtttttcttggcattcatacc 1376 Query: 666 atccatctcagt 677 |||||| ||||| Sbjct: 1375 atccatttcagt 1364
>gb|BC114306.1| Danio rerio zgc:136908, mRNA (cDNA clone MGC:136908 IMAGE:7993906), complete cds Length = 2707 Score = 48.1 bits (24), Expect = 0.038 Identities = 82/100 (82%), Gaps = 1/100 (1%) Strand = Plus / Minus Query: 546 tcaggaagagggatgtagataagctgatcaagacgccctggcctaagcagggcaggggtc 605 ||||| |||||||| || ||||||||||| | ||| || ||||| || | |||||| || Sbjct: 2010 tcaggcagagggatataaataagctgatccaaacgaccaggccttagaatggcagga-tc 1952 Query: 606 tatgatgtctggcctgttggtagcaccaatgatgaagacg 645 ||||| || |||||||| || ||||||||||| |||||| Sbjct: 1951 aatgatatcaggcctgttagtggcaccaatgataaagacg 1912
>ref|NM_001039928.1| Danio rerio zgc:136908 (zgc:136908), mRNA Length = 2707 Score = 48.1 bits (24), Expect = 0.038 Identities = 82/100 (82%), Gaps = 1/100 (1%) Strand = Plus / Minus Query: 546 tcaggaagagggatgtagataagctgatcaagacgccctggcctaagcagggcaggggtc 605 ||||| |||||||| || ||||||||||| | ||| || ||||| || | |||||| || Sbjct: 2010 tcaggcagagggatataaataagctgatccaaacgaccaggccttagaatggcagga-tc 1952 Query: 606 tatgatgtctggcctgttggtagcaccaatgatgaagacg 645 ||||| || |||||||| || ||||||||||| |||||| Sbjct: 1951 aatgatatcaggcctgttagtggcaccaatgataaagacg 1912
>dbj|AK149931.1| Mus musculus bone marrow macrophage cDNA, RIKEN full-length enriched library, clone:G530106G21 product:valosin containing protein, full insert sequence Length = 2803 Score = 48.1 bits (24), Expect = 0.038 Identities = 30/32 (93%) Strand = Plus / Minus Query: 607 atgatgtctggcctgttggtagcaccaatgat 638 |||||||| |||||||||||||| |||||||| Sbjct: 2108 atgatgtcaggcctgttggtagctccaatgat 2077
>dbj|AK146109.1| Mus musculus 14 days pregnant adult female placenta cDNA, RIKEN full-length enriched library, clone:I530030L06 product:valosin containing protein, full insert sequence Length = 2855 Score = 48.1 bits (24), Expect = 0.038 Identities = 30/32 (93%) Strand = Plus / Minus Query: 607 atgatgtctggcctgttggtagcaccaatgat 638 |||||||| |||||||||||||| |||||||| Sbjct: 2110 atgatgtcaggcctgttggtagctccaatgat 2079
>dbj|AK153012.1| Mus musculus bone marrow macrophage cDNA, RIKEN full-length enriched library, clone:I830114G12 product:valosin containing protein, full insert sequence Length = 2841 Score = 48.1 bits (24), Expect = 0.038 Identities = 30/32 (93%) Strand = Plus / Minus Query: 607 atgatgtctggcctgttggtagcaccaatgat 638 |||||||| |||||||||||||| |||||||| Sbjct: 2146 atgatgtcaggcctgttggtagctccaatgat 2115
>dbj|AK151418.1| Mus musculus bone marrow macrophage cDNA, RIKEN full-length enriched library, clone:I830029K16 product:valosin containing protein, full insert sequence Length = 3210 Score = 48.1 bits (24), Expect = 0.038 Identities = 30/32 (93%) Strand = Plus / Minus Query: 607 atgatgtctggcctgttggtagcaccaatgat 638 |||||||| |||||||||||||| |||||||| Sbjct: 2109 atgatgtcaggcctgttggtagctccaatgat 2078
>dbj|AK167794.1| Mus musculus TIB-55 BB88 cDNA, RIKEN full-length enriched library, clone:I730026E20 product:valosin containing protein, full insert sequence Length = 2858 Score = 48.1 bits (24), Expect = 0.038 Identities = 30/32 (93%) Strand = Plus / Minus Query: 607 atgatgtctggcctgttggtagcaccaatgat 638 |||||||| |||||||||||||| |||||||| Sbjct: 2163 atgatgtcaggcctgttggtagctccaatgat 2132
>gb|AC103566.1| Caenorhabditis briggsae cosmid CB024E07, complete sequence Length = 79224 Score = 48.1 bits (24), Expect = 0.038 Identities = 30/32 (93%) Strand = Plus / Plus Query: 186 ccgaatccacgagactgctgcagcgtctgggc 217 ||||| |||||||||||||| ||||||||||| Sbjct: 63413 ccgaagccacgagactgctggagcgtctgggc 63444 Score = 40.1 bits (20), Expect = 9.4 Identities = 56/68 (82%) Strand = Plus / Plus Query: 607 atgatgtctggcctgttggtagcaccaatgatgaagacggttttcttagcattcatgcca 666 ||||||||||| || ||||| || || ||||||||||| | ||||| || ||||| || Sbjct: 63893 atgatgtctggtctattggtggctccgatgatgaagacattcttcttcgcgttcattccg 63952 Query: 667 tccatctc 674 |||||||| Sbjct: 63953 tccatctc 63960
>dbj|AK160889.1| Mus musculus 12 days embryo embryonic body below diaphragm region cDNA, RIKEN full-length enriched library, clone:3732413B21 product:valosin containing protein, full insert sequence Length = 2726 Score = 48.1 bits (24), Expect = 0.038 Identities = 30/32 (93%) Strand = Plus / Minus Query: 607 atgatgtctggcctgttggtagcaccaatgat 638 |||||||| |||||||||||||| |||||||| Sbjct: 2030 atgatgtcaggcctgttggtagctccaatgat 1999
>dbj|AK153249.1| Mus musculus bone marrow macrophage cDNA, RIKEN full-length enriched library, clone:I830129H23 product:valosin containing protein, full insert sequence Length = 3286 Score = 48.1 bits (24), Expect = 0.038 Identities = 30/32 (93%) Strand = Plus / Minus Query: 607 atgatgtctggcctgttggtagcaccaatgat 638 |||||||| |||||||||||||| |||||||| Sbjct: 2186 atgatgtcaggcctgttggtagctccaatgat 2155
>dbj|AK159475.1| Mus musculus osteoclast-like cell cDNA, RIKEN full-length enriched library, clone:I420020M12 product:valosin containing protein, full insert sequence Length = 2859 Score = 48.1 bits (24), Expect = 0.038 Identities = 30/32 (93%) Strand = Plus / Minus Query: 607 atgatgtctggcctgttggtagcaccaatgat 638 |||||||| |||||||||||||| |||||||| Sbjct: 2142 atgatgtcaggcctgttggtagctccaatgat 2111
>dbj|AK159509.1| Mus musculus osteoclast-like cell cDNA, RIKEN full-length enriched library, clone:I420022F22 product:valosin containing protein, full insert sequence Length = 2882 Score = 48.1 bits (24), Expect = 0.038 Identities = 30/32 (93%) Strand = Plus / Minus Query: 607 atgatgtctggcctgttggtagcaccaatgat 638 |||||||| |||||||||||||| |||||||| Sbjct: 2187 atgatgtcaggcctgttggtagctccaatgat 2156
>dbj|AK169140.1| Mus musculus 17 days embryo kidney cDNA, RIKEN full-length enriched library, clone:I920083B16 product:valosin containing protein, full insert sequence Length = 2812 Score = 48.1 bits (24), Expect = 0.038 Identities = 30/32 (93%) Strand = Plus / Minus Query: 607 atgatgtctggcctgttggtagcaccaatgat 638 |||||||| |||||||||||||| |||||||| Sbjct: 2117 atgatgtcaggcctgttggtagctccaatgat 2086
>dbj|AK151109.1| Mus musculus bone marrow macrophage cDNA, RIKEN full-length enriched library, clone:I830025E07 product:valosin containing protein, full insert sequence Length = 3210 Score = 48.1 bits (24), Expect = 0.038 Identities = 30/32 (93%) Strand = Plus / Minus Query: 607 atgatgtctggcctgttggtagcaccaatgat 638 |||||||| |||||||||||||| |||||||| Sbjct: 2109 atgatgtcaggcctgttggtagctccaatgat 2078
>dbj|AK010612.1| Mus musculus ES cells cDNA, RIKEN full-length enriched library, clone:2410030B05 product:transitional endoplasmic reticulum ATPase homolog [Sus scrofa domestica], full insert sequence Length = 1665 Score = 48.1 bits (24), Expect = 0.038 Identities = 30/32 (93%) Strand = Plus / Minus Query: 607 atgatgtctggcctgttggtagcaccaatgat 638 |||||||| |||||||||||||| |||||||| Sbjct: 565 atgatgtcaggcctgttggtagctccaatgat 534
>dbj|AK083821.1| Mus musculus 12 days embryo spinal ganglion cDNA, RIKEN full-length enriched library, clone:D130015G23 product:valosin containing protein, full insert sequence Length = 2416 Score = 48.1 bits (24), Expect = 0.038 Identities = 30/32 (93%) Strand = Plus / Minus Query: 607 atgatgtctggcctgttggtagcaccaatgat 638 |||||||| |||||||||||||| |||||||| Sbjct: 1721 atgatgtcaggcctgttggtagctccaatgat 1690
>ref|NM_063872.3| Caenorhabditis elegans Cell Division Cycle related family member (cdc-48.1) (cdc-48.1) mRNA, complete cds Length = 2762 Score = 48.1 bits (24), Expect = 0.038 Identities = 30/32 (93%) Strand = Plus / Minus Query: 555 gggatgtagataagctgatcaagacgccctgg 586 ||||||||||||||||||||||| || ||||| Sbjct: 1975 gggatgtagataagctgatcaaggcgacctgg 1944
>ref|NM_063304.2| Caenorhabditis elegans Cell Division Cycle related family member (cdc-48.2) (cdc-48.2) mRNA, complete cds Length = 2632 Score = 48.1 bits (24), Expect = 0.038 Identities = 106/132 (80%), Gaps = 1/132 (0%) Strand = Plus / Minus Query: 546 tcaggaagagggatgtagataagctgatcaagacgccctggcctaagcagggcaggggtc 605 ||||||||||| |||||||| | |||||| ||||| ||||| | ||| | || || || Sbjct: 2050 tcaggaagaggaatgtagatcaactgatcgagacgtcctggacgaagaacagc-tggatc 1992 Query: 606 tatgatgtctggcctgttggtagcaccaatgatgaagacggttttcttagcattcatgcc 665 ||||| || || | |||||||| ||||| ||||| ||| ||||||| |||||||| || Sbjct: 1991 aatgatatcaggacgattggtagctccaataatgaacacgtttttcttggcattcatacc 1932 Query: 666 atccatctcagt 677 |||||| ||||| Sbjct: 1931 atccatttcagt 1920
>dbj|AK028264.1| Mus musculus 13 days embryo head cDNA, RIKEN full-length enriched library, clone:3110001E05 product:valosin containing protein, full insert sequence Length = 3245 Score = 48.1 bits (24), Expect = 0.038 Identities = 30/32 (93%) Strand = Plus / Minus Query: 607 atgatgtctggcctgttggtagcaccaatgat 638 |||||||| |||||||||||||| |||||||| Sbjct: 2144 atgatgtcaggcctgttggtagctccaatgat 2113
>ref|NG_002295.1| Mus musculus valosin containing protein pseudogene (Vcp-ps) on chromosome X Length = 3607 Score = 48.1 bits (24), Expect = 0.038 Identities = 30/32 (93%) Strand = Plus / Minus Query: 607 atgatgtctggcctgttggtagcaccaatgat 638 |||||||| |||||||||||||| |||||||| Sbjct: 2391 atgatgtcaggcctgttggtagctccaatgat 2360
>dbj|AK030751.1| Mus musculus 8 days embryo whole body cDNA, RIKEN full-length enriched library, clone:5730519N02 product:valosin containing protein, full insert sequence Length = 3091 Score = 48.1 bits (24), Expect = 0.038 Identities = 30/32 (93%) Strand = Plus / Minus Query: 607 atgatgtctggcctgttggtagcaccaatgat 638 |||||||| |||||||||||||| |||||||| Sbjct: 2046 atgatgtcaggcctgttggtagctccaatgat 2015
>dbj|AK209378.1| Mus musculus cDNA, clone:Y2G0114O17, strand:plus, reference:ENSEMBL:Mouse-Transcript- ENST:ENSMUST00000030164, based on BLAT search Length = 410 Score = 48.1 bits (24), Expect = 0.038 Identities = 30/32 (93%) Strand = Plus / Minus Query: 607 atgatgtctggcctgttggtagcaccaatgat 638 |||||||| |||||||||||||| |||||||| Sbjct: 209 atgatgtcaggcctgttggtagctccaatgat 178
>dbj|AK209215.1| Mus musculus cDNA, clone:Y2G0114F19, strand:plus, reference:ENSEMBL:Mouse-Transcript- ENST:ENSMUST00000030164, based on BLAT search Length = 408 Score = 48.1 bits (24), Expect = 0.038 Identities = 30/32 (93%) Strand = Plus / Minus Query: 607 atgatgtctggcctgttggtagcaccaatgat 638 |||||||| |||||||||||||| |||||||| Sbjct: 209 atgatgtcaggcctgttggtagctccaatgat 178
>dbj|AK207257.1| Mus musculus cDNA, clone:Y2G0107G23, strand:minus, reference:ENSEMBL:Mouse-Transcript- ENST:ENSMUST00000030164, based on BLAT search Length = 396 Score = 48.1 bits (24), Expect = 0.038 Identities = 30/32 (93%) Strand = Plus / Minus Query: 607 atgatgtctggcctgttggtagcaccaatgat 638 |||||||| |||||||||||||| |||||||| Sbjct: 48 atgatgtcaggcctgttggtagctccaatgat 17
>dbj|AK186028.1| Mus musculus cDNA, clone:Y0G0136A10, strand:plus, reference:ENSEMBL:Mouse-Transcript- ENST:ENSMUST00000030164, based on BLAT search Length = 399 Score = 48.1 bits (24), Expect = 0.038 Identities = 30/32 (93%) Strand = Plus / Minus Query: 607 atgatgtctggcctgttggtagcaccaatgat 638 |||||||| |||||||||||||| |||||||| Sbjct: 209 atgatgtcaggcctgttggtagctccaatgat 178
>gb|AF122048.1|AF122048 Mus musculus p97 ATPase pseudogene, complete sequence Length = 3607 Score = 48.1 bits (24), Expect = 0.038 Identities = 30/32 (93%) Strand = Plus / Minus Query: 607 atgatgtctggcctgttggtagcaccaatgat 638 |||||||| |||||||||||||| |||||||| Sbjct: 2391 atgatgtcaggcctgttggtagctccaatgat 2360
>gb|AC005259.1|AC005259 Mouse BAC CitbCJ7 219m7, genomic sequence, complete sequence Length = 124230 Score = 48.1 bits (24), Expect = 0.038 Identities = 30/32 (93%) Strand = Plus / Minus Query: 607 atgatgtctggcctgttggtagcaccaatgat 638 |||||||| |||||||||||||| |||||||| Sbjct: 85414 atgatgtcaggcctgttggtagctccaatgat 85383
>gb|BC043053.1| Mus musculus valosin containing protein, mRNA (cDNA clone MGC:57954 IMAGE:6418662), complete cds Length = 2898 Score = 48.1 bits (24), Expect = 0.038 Identities = 30/32 (93%) Strand = Plus / Minus Query: 607 atgatgtctggcctgttggtagcaccaatgat 638 |||||||| |||||||||||||| |||||||| Sbjct: 2119 atgatgtcaggcctgttggtagctccaatgat 2088
>emb|AL672276.9| Mouse DNA sequence from clone RP23-124L1 on chromosome 4, complete sequence Length = 208030 Score = 48.1 bits (24), Expect = 0.038 Identities = 30/32 (93%) Strand = Plus / Plus Query: 607 atgatgtctggcctgttggtagcaccaatgat 638 |||||||| |||||||||||||| |||||||| Sbjct: 119167 atgatgtcaggcctgttggtagctccaatgat 119198
>emb|AL663052.8| Mouse DNA sequence from clone RP23-202N14 on chromosome X, complete sequence Length = 202972 Score = 48.1 bits (24), Expect = 0.038 Identities = 30/32 (93%) Strand = Plus / Plus Query: 607 atgatgtctggcctgttggtagcaccaatgat 638 |||||||| |||||||||||||| |||||||| Sbjct: 123060 atgatgtcaggcctgttggtagctccaatgat 123091
>gb|BC060518.1| Rattus norvegicus valosin-containing protein, mRNA (cDNA clone MGC:72335 IMAGE:5597843), complete cds Length = 3214 Score = 46.1 bits (23), Expect = 0.15 Identities = 78/95 (82%), Gaps = 1/95 (1%) Strand = Plus / Minus Query: 544 catcaggaagagggatgtagataagctgatcaagacgccctggcctaagcagggcagggg 603 |||||||||| ||||| || || |||||||||||||| || || || || | ||| || Sbjct: 2159 catcaggaagtgggatataaatgagctgatcaagacggccaggtcttaggatagca-gga 2101 Query: 604 tctatgatgtctggcctgttggtagcaccaatgat 638 || |||||||| |||| ||||||||| |||||||| Sbjct: 2100 tcaatgatgtcaggccggttggtagctccaatgat 2066
>ref|NM_165726.1| Drosophila melanogaster TER94 CG2331-RB, transcript variant B (TER94), mRNA Length = 1458 Score = 46.1 bits (23), Expect = 0.15 Identities = 32/35 (91%) Strand = Plus / Minus Query: 186 ccgaatccacgagactgctgcagcgtctgggcaaa 220 ||||||||||| |||||||||| ||||||||||| Sbjct: 862 ccgaatccacgggactgctgcaaagtctgggcaaa 828
>ref|NM_058021.3| Drosophila melanogaster TER94 CG2331-RA, transcript variant A (TER94), mRNA Length = 3018 Score = 46.1 bits (23), Expect = 0.15 Identities = 32/35 (91%) Strand = Plus / Minus Query: 186 ccgaatccacgagactgctgcagcgtctgggcaaa 220 ||||||||||| |||||||||| ||||||||||| Sbjct: 2426 ccgaatccacgggactgctgcaaagtctgggcaaa 2392
>gb|AC007414.6| Drosophila melanogaster, chromosome 2R, region 46C-46D, BAC clone BACR06J01, complete sequence Length = 172904 Score = 46.1 bits (23), Expect = 0.15 Identities = 32/35 (91%) Strand = Plus / Minus Query: 186 ccgaatccacgagactgctgcagcgtctgggcaaa 220 ||||||||||| |||||||||| ||||||||||| Sbjct: 47748 ccgaatccacgggactgctgcaaagtctgggcaaa 47714
>gb|AC007413.5|AC007413 Drosophila melanogaster, chromosome 2R, region 46C-46D, BAC clone BACR01L01, complete sequence Length = 160301 Score = 46.1 bits (23), Expect = 0.15 Identities = 32/35 (91%) Strand = Plus / Minus Query: 186 ccgaatccacgagactgctgcagcgtctgggcaaa 220 ||||||||||| |||||||||| ||||||||||| Sbjct: 159195 ccgaatccacgggactgctgcaaagtctgggcaaa 159161
>gb|AY190939.1| Drosophila erecta clone DERF01_42_I03 (D1420) genomic sequence Length = 45909 Score = 46.1 bits (23), Expect = 0.15 Identities = 32/35 (91%) Strand = Plus / Minus Query: 186 ccgaatccacgagactgctgcagcgtctgggcaaa 220 ||||||||||| |||||||||| ||||||||||| Sbjct: 39169 ccgaatccacgggactgctgcaaagtctgggcaaa 39135
>gb|AE003831.3| Drosophila melanogaster chromosome 2R, section 19 of 73 of the complete sequence Length = 275390 Score = 46.1 bits (23), Expect = 0.15 Identities = 32/35 (91%) Strand = Plus / Minus Query: 186 ccgaatccacgagactgctgcagcgtctgggcaaa 220 ||||||||||| |||||||||| ||||||||||| Sbjct: 145041 ccgaatccacgggactgctgcaaagtctgggcaaa 145007
>gb|BT001521.1| Drosophila melanogaster LP12034 full insert cDNA Length = 1473 Score = 46.1 bits (23), Expect = 0.15 Identities = 32/35 (91%) Strand = Plus / Minus Query: 186 ccgaatccacgagactgctgcagcgtctgggcaaa 220 ||||||||||| |||||||||| ||||||||||| Sbjct: 863 ccgaatccacgggactgctgcaaagtctgggcaaa 829
>gb|U11760.1|RNU11760 Rattus norvegicus transitional endoplasmic reticulum ATPase mRNA, complete cds Length = 2870 Score = 46.1 bits (23), Expect = 0.15 Identities = 78/95 (82%), Gaps = 1/95 (1%) Strand = Plus / Minus Query: 544 catcaggaagagggatgtagataagctgatcaagacgccctggcctaagcagggcagggg 603 |||||||||| ||||| || || |||||||||||||| || || || || | ||| || Sbjct: 2191 catcaggaagtgggatataaatgagctgatcaagacggccaggtcttaggatagca-gga 2133 Query: 604 tctatgatgtctggcctgttggtagcaccaatgat 638 || |||||||| |||| ||||||||| |||||||| Sbjct: 2132 tcaatgatgtcaggccggttggtagctccaatgat 2098
>ref|NM_053864.2| Rattus norvegicus valosin-containing protein (Vcp), mRNA Length = 3214 Score = 46.1 bits (23), Expect = 0.15 Identities = 78/95 (82%), Gaps = 1/95 (1%) Strand = Plus / Minus Query: 544 catcaggaagagggatgtagataagctgatcaagacgccctggcctaagcagggcagggg 603 |||||||||| ||||| || || |||||||||||||| || || || || | ||| || Sbjct: 2159 catcaggaagtgggatataaatgagctgatcaagacggccaggtcttaggatagca-gga 2101 Query: 604 tctatgatgtctggcctgttggtagcaccaatgat 638 || |||||||| |||| ||||||||| |||||||| Sbjct: 2100 tcaatgatgtcaggccggttggtagctccaatgat 2066
>gb|AF047037.1|AF047037 Drosophila melanogaster transitional endoplasmic reticulum ATPase TER94 mRNA, complete cds Length = 2550 Score = 46.1 bits (23), Expect = 0.15 Identities = 32/35 (91%) Strand = Plus / Minus Query: 186 ccgaatccacgagactgctgcagcgtctgggcaaa 220 ||||||||||| |||||||||| ||||||||||| Sbjct: 2367 ccgaatccacgggactgctgcaaagtctgggcaaa 2333
>gb|AF132553.1| Drosophila melanogaster BcDNA.GM02885 (BcDNA.GM02885) mRNA, complete cds Length = 3018 Score = 46.1 bits (23), Expect = 0.15 Identities = 32/35 (91%) Strand = Plus / Minus Query: 186 ccgaatccacgagactgctgcagcgtctgggcaaa 220 ||||||||||| |||||||||| ||||||||||| Sbjct: 2410 ccgaatccacgggactgctgcaaagtctgggcaaa 2376
>ref|NM_001031502.1| Gallus gallus DnaJ (Hsp40) homolog, subfamily C, member 7 (DNAJC7), mRNA Length = 5522 Score = 44.1 bits (22), Expect = 0.60 Identities = 22/22 (100%) Strand = Plus / Minus Query: 137 ggcagaggcagcgcccgcagcc 158 |||||||||||||||||||||| Sbjct: 4912 ggcagaggcagcgcccgcagcc 4891
>gb|DQ443348.1| Bombyx mori transitional endoplasmic reticulum ATPase TER94 mRNA, complete cds Length = 2760 Score = 44.1 bits (22), Expect = 0.60 Identities = 61/74 (82%) Strand = Plus / Minus Query: 601 gggtctatgatgtctggcctgttggtagcaccaatgatgaagacggttttcttagcattc 660 ||||| |||||||| || ||||| || ||||| |||||||||||| | ||||| || | Sbjct: 1999 gggtcgatgatgtccggtctgtttgtggcaccgatgatgaagacgttcttcttggcgccc 1940 Query: 661 atgccatccatctc 674 ||||| |||||||| Sbjct: 1939 atgccgtccatctc 1926
>emb|AJ851525.1| Gallus gallus mRNA for hypothetical protein, clone 4m5 Length = 5522 Score = 44.1 bits (22), Expect = 0.60 Identities = 22/22 (100%) Strand = Plus / Minus Query: 137 ggcagaggcagcgcccgcagcc 158 |||||||||||||||||||||| Sbjct: 4912 ggcagaggcagcgcccgcagcc 4891
>dbj|AB244027.1| Bombyx mori ter94 mRNA for transitional endoplasmic reticulum ATPase TER94, complete cds Length = 2721 Score = 44.1 bits (22), Expect = 0.60 Identities = 61/74 (82%) Strand = Plus / Minus Query: 601 gggtctatgatgtctggcctgttggtagcaccaatgatgaagacggttttcttagcattc 660 ||||| |||||||| || ||||| || ||||| |||||||||||| | ||||| || | Sbjct: 1974 gggtcgatgatgtccggtctgtttgtggcaccgatgatgaagacgttcttcttggcgccc 1915 Query: 661 atgccatccatctc 674 ||||| |||||||| Sbjct: 1914 atgccgtccatctc 1901
>emb|CR387484.1| Gallus gallus finished cDNA, clone ChEST490i16 Length = 872 Score = 44.1 bits (22), Expect = 0.60 Identities = 22/22 (100%) Strand = Plus / Minus Query: 137 ggcagaggcagcgcccgcagcc 158 |||||||||||||||||||||| Sbjct: 519 ggcagaggcagcgcccgcagcc 498
>ref|XM_429532.1| PREDICTED: Gallus gallus LOC417817 (LOC417817), mRNA Length = 1393 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 353 cctccgcctctccctctcgatgtcc 377 ||||||||||||||||||| ||||| Sbjct: 516 cctccgcctctccctctcgctgtcc 492
>ref|XM_329540.1| Neurospora crassa OR74A hypothetical protein (NCU08496.1) partial mRNA Length = 3873 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 350 cttcctccgcctctccctctc 370 ||||||||||||||||||||| Sbjct: 173 cttcctccgcctctccctctc 193
>ref|XM_958332.1| Neurospora crassa OR74A hypothetical protein (NCU08496.1) partial mRNA Length = 3873 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 350 cttcctccgcctctccctctc 370 ||||||||||||||||||||| Sbjct: 173 cttcctccgcctctccctctc 193
>gb|AY606032.1| Oncorhynchus mykiss valosin containing protein mRNA, complete cds Length = 2681 Score = 42.1 bits (21), Expect = 2.4 Identities = 39/45 (86%) Strand = Plus / Minus Query: 601 gggtctatgatgtctggcctgttggtagcaccaatgatgaagacg 645 ||||| ||||| || ||||||||||| || || |||||||||||| Sbjct: 1735 gggtcgatgatatcaggcctgttggtggcgccgatgatgaagacg 1691
>ref|XM_386072.1| Gibberella zeae PH-1 chromosome 3 hypothetical protein (FG05896.1) partial mRNA Length = 1653 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 629 caccaatgatgaagacggttttctt 653 |||| |||||||||||||||||||| Sbjct: 1389 caccgatgatgaagacggttttctt 1413
>emb|AL390066.5| Human DNA sequence from clone RP5-1086K13 on chromosome 1 Contains the 5' end of a novel gene, the 3' end of a novel gene, the 3' end of the CD58 gene for CD58 antigen (lymphocyte function-associated antigen 3), a novel gene and the 3' end of a nucleosome assembly protein 1-like 4 (NAP1L4) pseudogene, complete sequence Length = 103611 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 338 ttcagggttgtccttcctccg 358 ||||||||||||||||||||| Sbjct: 34751 ttcagggttgtccttcctccg 34731
>ref|XM_789562.1| PREDICTED: Strongylocentrotus purpuratus similar to CG14788-PA (LOC589934), mRNA Length = 2091 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 311 ctcatcaacctcgtcctcctccatc 335 |||||||||||| |||||||||||| Sbjct: 1086 ctcatcaacctcatcctcctccatc 1062
>emb|CR543861.1| Acinetobacter sp. ADP1 complete genome Length = 3598621 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 513 caagctttgaagatctggtgc 533 ||||||||||||||||||||| Sbjct: 3397604 caagctttgaagatctggtgc 3397624
>emb|BX842594.1| Neurospora crassa DNA linkage group II BAC clone B18P7 Length = 95637 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 350 cttcctccgcctctccctctc 370 ||||||||||||||||||||| Sbjct: 11169 cttcctccgcctctccctctc 11189
>emb|AL356834.1|NCB11B22 Neurospora crassa DNA linkage group II BAC clone B11B22 Length = 73803 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 350 cttcctccgcctctccctctc 370 ||||||||||||||||||||| Sbjct: 32871 cttcctccgcctctccctctc 32851
>ref|XM_316139.2| Anopheles gambiae str. PEST ENSANGP00000020353 (ENSANGG00000017864), partial mRNA Length = 4518 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 153 gcagccggctggtcagcgaaccgga 177 |||||||| |||||||||||||||| Sbjct: 4369 gcagccggttggtcagcgaaccgga 4345
>gb|AC115011.27| Mus musculus chromosome 1, clone RP24-192A11, complete sequence Length = 173802 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 132 gcagcggcagaggcagcgcc 151 |||||||||||||||||||| Sbjct: 133711 gcagcggcagaggcagcgcc 133692
>gb|CP000108.1| Chlorobium chlorochromatii CaD3, complete genome Length = 2572079 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 653 tagcattcatgccatccatc 672 |||||||||||||||||||| Sbjct: 2198299 tagcattcatgccatccatc 2198280
>ref|XM_510327.1| PREDICTED: Pan troglodytes LOC453353 (LOC453353), mRNA Length = 11427 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 129 gccgcagcggcagaggcagc 148 |||||||||||||||||||| Sbjct: 9429 gccgcagcggcagaggcagc 9410
>gb|DQ213299.1| Taeniopygia guttata clone 0061P0022E10 BRCA2 and CDKN1A-interacting protein-like mRNA, complete sequence Length = 1286 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 134 agcggcagaggcagcgcccg 153 |||||||||||||||||||| Sbjct: 96 agcggcagaggcagcgcccg 77
>gb|AC114651.11| Mus musculus chromosome 1, clone RP24-153E5, complete sequence Length = 176384 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 132 gcagcggcagaggcagcgcc 151 |||||||||||||||||||| Sbjct: 154827 gcagcggcagaggcagcgcc 154846
>ref|XM_584418.2| PREDICTED: Bos taurus similar to T-cell leukemia homeobox protein 2 (Homeobox protein Hox-11L1) (Homeobox TLX-2) (PMUR10F) (LOC539041), mRNA Length = 855 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 127 cggccgcagcggcagaggcagcgc 150 ||||||||||||| |||||||||| Sbjct: 735 cggccgcagcggccgaggcagcgc 712
>ref|XM_958626.1| Neurospora crassa OR74A hypothetical protein (NCU00912.1) partial mRNA Length = 1128 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 383 gatgttctccctgatggcat 402 |||||||||||||||||||| Sbjct: 1104 gatgttctccctgatggcat 1085
>ref|XM_325091.1| Neurospora crassa OR74A hypothetical protein (NCU00912.1) partial mRNA Length = 1128 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 383 gatgttctccctgatggcat 402 |||||||||||||||||||| Sbjct: 1104 gatgttctccctgatggcat 1085
>gb|BC044484.1| Danio rerio heterogeneous nuclear ribonucleoprotein A0, mRNA (cDNA clone IMAGE:3817156), partial cds Length = 1306 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 350 cttcctccgcctctccctct 369 |||||||||||||||||||| Sbjct: 644 cttcctccgcctctccctct 625
>gb|BC056723.1| Danio rerio heterogeneous nuclear ribonucleoprotein A0, mRNA (cDNA clone IMAGE:6792233) Length = 1465 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 350 cttcctccgcctctccctct 369 |||||||||||||||||||| Sbjct: 624 cttcctccgcctctccctct 605
>gb|BC056530.1| Danio rerio heterogeneous nuclear ribonucleoprotein A0, mRNA (cDNA clone IMAGE:6792071), partial cds Length = 1465 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 350 cttcctccgcctctccctct 369 |||||||||||||||||||| Sbjct: 624 cttcctccgcctctccctct 605
>ref|XM_817728.1| Trypanosoma brucei TREU927 valosin-containing protein homolog (Tb10.70.1190) partial mRNA Length = 2343 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 227 gtacttgcggatgtcggcgtcact 250 ||||||||||||||| |||||||| Sbjct: 2223 gtacttgcggatgtcagcgtcact 2200
>ref|XM_804187.1| Trypanosoma cruzi strain CL Brener hypothetical protein (Tc00.1047053506399.80) partial mRNA Length = 1221 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 187 cgaatccacgagactgctgcagcg 210 ||||||||||||| |||||||||| Sbjct: 422 cgaatccacgagattgctgcagcg 399
>gb|AC009119.10| Homo sapiens chromosome 16 clone RP11-483P21, complete sequence Length = 181020 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 588 ctaagcagggcaggggtcta 607 |||||||||||||||||||| Sbjct: 115857 ctaagcagggcaggggtcta 115838
>gb|AC113124.9| Mus musculus chromosome 19, clone RP23-350M1, complete sequence Length = 216547 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 350 cttcctccgcctctccctct 369 |||||||||||||||||||| Sbjct: 122217 cttcctccgcctctccctct 122236
>ref|XM_502698.1| Yarrowia lipolytica CLIB122, YALI0D11418g predicted mRNA Length = 1311 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 371 gatgtccttctcgatgttct 390 |||||||||||||||||||| Sbjct: 159 gatgtccttctcgatgttct 140
>emb|BX842682.1| Neurospora crassa DNA linkage group I BAC contig B13C5 Length = 116467 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 383 gatgttctccctgatggcat 402 |||||||||||||||||||| Sbjct: 30037 gatgttctccctgatggcat 30018
>emb|BX088707.15| Zebrafish DNA sequence from clone CH211-195B11 in linkage group 14, complete sequence Length = 137128 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 350 cttcctccgcctctccctct 369 |||||||||||||||||||| Sbjct: 129312 cttcctccgcctctccctct 129293
>emb|BX544890.7| Zebrafish DNA sequence from clone DKEY-240I4 in linkage group 14, complete sequence Length = 93993 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 350 cttcctccgcctctccctct 369 |||||||||||||||||||| Sbjct: 33512 cttcctccgcctctccctct 33493
>gb|AC023740.4| Drosophila melanogaster X BAC RP98-27J18 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 163764 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 127 cggccgcagcggcagaggcagcgc 150 |||| ||||||||||||||||||| Sbjct: 96006 cggcggcagcggcagaggcagcgc 96029
>gb|AF095239.1|GMFIBH1 Galleria mellonella heavy-chain fibroin (Fib-H) gene, 5' partial cds Length = 6999 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 98 ggctgctgaggcagcggatg 117 |||||||||||||||||||| Sbjct: 3510 ggctgctgaggcagcggatg 3491
>gb|AC183495.1| Brassica oleracea Contig A, complete sequence Length = 356505 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 443 gctgaacccttgggtgtact 462 |||||||||||||||||||| Sbjct: 43548 gctgaacccttgggtgtact 43529
>gb|AC009036.7| Homo sapiens chromosome 16 clone RP11-142L23, complete sequence Length = 193790 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 588 ctaagcagggcaggggtcta 607 |||||||||||||||||||| Sbjct: 178958 ctaagcagggcaggggtcta 178939
>ref|XM_691739.1| PREDICTED: Danio rerio similar to Hnrpa0 protein (LOC573681), mRNA Length = 1284 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 350 cttcctccgcctctccctct 369 |||||||||||||||||||| Sbjct: 647 cttcctccgcctctccctct 628
>dbj|AP006878.1| Thermococcus kodakarensis KOD1 DNA, complete genome Length = 2088737 Score = 40.1 bits (20), Expect = 9.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 610 atgtctggcctgttggtagcaccaatga 637 ||||| ||||||||||| |||||||||| Sbjct: 1016776 atgtccggcctgttggtggcaccaatga 1016749 Score = 40.1 bits (20), Expect = 9.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 610 atgtctggcctgttggtagcaccaatga 637 ||||| ||||||||||| |||||||||| Sbjct: 572589 atgtccggcctgttggtggcaccaatga 572616
>gb|AC009258.3|AC009258 Drosophila melanogaster, chromosome 3R, region 85C-85C, BAC clone BACR09F04, complete sequence Length = 176036 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 132 gcagcggcagaggcagcgcc 151 |||||||||||||||||||| Sbjct: 120341 gcagcggcagaggcagcgcc 120360
>gb|AC069240.23| Homo sapiens 12 BAC RP11-385N17 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 210010 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 348 tccttcctccgcctctccct 367 |||||||||||||||||||| Sbjct: 47446 tccttcctccgcctctccct 47465
>dbj|AK173462.1| Ciona intestinalis cDNA, clone:cieg017i02, full insert sequence Length = 1803 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 546 tcaggaagagggatgtagat 565 |||||||||||||||||||| Sbjct: 1222 tcaggaagagggatgtagat 1203
>gb|AE005149.1| Halobacterium sp. NRC-1 plasmid pNRC200 section 10 of 32 of the complete genome Length = 10686 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 314 atcaacctcgtcctcctccatcgc 337 |||||| ||||||||||||||||| Sbjct: 9250 atcaacgtcgtcctcctccatcgc 9227
>gb|BC066434.1| Danio rerio heterogeneous nuclear ribonucleoprotein A0, mRNA (cDNA clone MGC:77280 IMAGE:6964851), complete cds Length = 1820 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 350 cttcctccgcctctccctct 369 |||||||||||||||||||| Sbjct: 631 cttcctccgcctctccctct 612
>gb|AE003681.5| Drosophila melanogaster chromosome 3R, section 19 of 118 of the complete sequence Length = 306650 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 132 gcagcggcagaggcagcgcc 151 |||||||||||||||||||| Sbjct: 126570 gcagcggcagaggcagcgcc 126589
>gb|AF044488.1|AF044488 Trypanosoma brucei valosin-containing protein homolog (VCP) gene, complete cds Length = 2463 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 227 gtacttgcggatgtcggcgtcact 250 ||||||||||||||| |||||||| Sbjct: 2307 gtacttgcggatgtcagcgtcact 2284
>gb|AE003435.3| Drosophila melanogaster chromosome X, section 19 of 74 of the complete sequence Length = 290042 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 127 cggccgcagcggcagaggcagcgc 150 |||| ||||||||||||||||||| Sbjct: 21510 cggcggcagcggcagaggcagcgc 21533
>gb|AC005696.1|AC005696 Homo sapiens chromosome 17, clone hRPK.74_E_22, complete sequence Length = 177411 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 140 agaggcagcgcccgcagccg 159 |||||||||||||||||||| Sbjct: 125327 agaggcagcgcccgcagccg 125346
>dbj|AK113028.1| Ciona intestinalis cDNA, clone:citb036i18, full insert sequence Length = 1757 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 546 tcaggaagagggatgtagat 565 |||||||||||||||||||| Sbjct: 1170 tcaggaagagggatgtagat 1151
>emb|CR382130.1| Yarrowia lipolytica chromosome D of strain CLIB122 of Yarrowia lipolytica Length = 3633272 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 371 gatgtccttctcgatgttct 390 |||||||||||||||||||| Sbjct: 1429531 gatgtccttctcgatgttct 1429550
>ref|NM_214706.1| Danio rerio heterogeneous nuclear ribonucleoprotein A0 (hnrpa0), mRNA Length = 1820 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 350 cttcctccgcctctccctct 369 |||||||||||||||||||| Sbjct: 631 cttcctccgcctctccctct 612
>gb|AF016485.1| Halobacterium sp. NRC-1 plasmid pNRC100, complete sequence Length = 191346 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 314 atcaacctcgtcctcctccatcgc 337 |||||| ||||||||||||||||| Sbjct: 111336 atcaacgtcgtcctcctccatcgc 111313
>dbj|AB018433.1| Pyrococcus kodakaraensis Pk-cdcA gene, complete cds Length = 2880 Score = 40.1 bits (20), Expect = 9.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 610 atgtctggcctgttggtagcaccaatga 637 ||||| ||||||||||| |||||||||| Sbjct: 2213 atgtccggcctgttggtggcaccaatga 2186 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,502,464 Number of Sequences: 3902068 Number of extensions: 5502464 Number of successful extensions: 102593 Number of sequences better than 10.0: 185 Number of HSP's better than 10.0 without gapping: 183 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 101859 Number of HSP's gapped (non-prelim): 662 length of query: 685 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 662 effective length of database: 17,143,297,704 effective search space: 11348863080048 effective search space used: 11348863080048 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
