ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags25c20
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SLIK6_MOUSE (Q8C110) SLIT and NTRK-like protein 6 precursor 28 6.2
2SLIK6_HUMAN (Q9H5Y7) SLIT and NTRK-like protein 6 precursor 28 8.1
3PECA1_BOVIN (P51866) Platelet endothelial cell adhesion molecule... 28 8.1

>SLIK6_MOUSE (Q8C110) SLIT and NTRK-like protein 6 precursor|
          Length = 840

 Score = 28.1 bits (61), Expect = 6.2
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +1

Query: 16  PTHARYQLYLYCLQSHYTTRLQHSLYEQRVAT 111
           P H +Y +Y +    H T R   SLYEQ + +
Sbjct: 652 PVHLQYSMYGHKTTHHTTERPSSSLYEQHMVS 683



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>SLIK6_HUMAN (Q9H5Y7) SLIT and NTRK-like protein 6 precursor|
          Length = 841

 Score = 27.7 bits (60), Expect = 8.1
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +1

Query: 16  PTHARYQLYLYCLQSHYTTRLQHSLYEQRVAT 111
           P H +Y +Y +    H T R   SLYEQ + +
Sbjct: 653 PVHLQYSMYGHKTTHHTTERPSASLYEQHMVS 684



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>PECA1_BOVIN (P51866) Platelet endothelial cell adhesion molecule precursor|
           (PECAM-1) (CD31 antigen)
          Length = 739

 Score = 27.7 bits (60), Expect = 8.1
 Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = -3

Query: 139 ISSRRASLSELLHAARITNVVTASCNVIVSN-TSTTGTVRAWV 14
           +SSRR + S L+   R+ +     CNVI++N   TT     WV
Sbjct: 85  VSSRRNTESYLIPHVRVCDSGRYKCNVILNNKEKTTPEYEVWV 127


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,689,685
Number of Sequences: 219361
Number of extensions: 393592
Number of successful extensions: 918
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 914
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 918
length of database: 80,573,946
effective HSP length: 62
effective length of database: 66,973,564
effective search space used: 1607365536
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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