ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags24n16 |
|---|---|
| Clone Library Name | barley_pub |
>NAK_ARATH (P43293) Probable serine/threonine-protein kinase NAK (EC 2.7.11.1)| Length = 389 Score = 77.4 bits (189), Expect = 3e-14 Identities = 35/69 (50%), Positives = 50/69 (72%) Frame = -1 Query: 660 PNXEHNLVEWARPYLGERRRFYRLVDPRLEGNFSIKGAQKTAQLAHACLSRDPKARPLMS 481 P EHNLV+WARPYL +RR R++DPRL+G +S+ A K A LA C+S D K+RP M+ Sbjct: 285 PVGEHNLVDWARPYLTNKRRLLRVMDPRLQGQYSLTRALKIAVLALDCISIDAKSRPTMN 344 Query: 480 QVVEVLKPL 454 ++V+ ++ L Sbjct: 345 EIVKTMEEL 353
>APK1A_ARATH (Q06548) Protein kinase APK1A, chloroplast precursor (EC 2.7.11.1)| Length = 410 Score = 70.9 bits (172), Expect = 3e-12 Identities = 44/128 (34%), Positives = 68/128 (53%), Gaps = 1/128 (0%) Frame = -1 Query: 660 PNXEHNLVEWARPYLGERRRFYRLVDPRLEGNFSIKGAQKTAQLAHACLSRDPKARPLMS 481 P+ E NLVEWA+PYL +R+ +R++D RL+ +S++ A K A L+ CL+ + K RP MS Sbjct: 285 PSGERNLVEWAKPYLVNKRKIFRVIDNRLQDQYSMEEACKVATLSLRCLTTEIKLRPNMS 344 Query: 480 QVVEVLKPLPNLKDMASSSYFFQSMRQERAASLNNPNGSQSMKAQSTFARNGVQPMRSLS 301 +VV L+ + +L + R R + + S K + FAR ++ Sbjct: 345 EVVSHLEHIQSLNAAIGGNMDKTDRRMRRRS-----DSVVSKKVNAGFARQTAVGSTVVA 399 Query: 300 Y-GPHASP 280 Y P ASP Sbjct: 400 YPRPSASP 407
>APK1B_ARATH (P46573) Protein kinase APK1B, chloroplast precursor (EC 2.7.11.1)| Length = 412 Score = 64.7 bits (156), Expect = 2e-10 Identities = 41/128 (32%), Positives = 66/128 (51%), Gaps = 1/128 (0%) Frame = -1 Query: 660 PNXEHNLVEWARPYLGERRRFYRLVDPRLEGNFSIKGAQKTAQLAHACLSRDPKARPLMS 481 P E LVEWARP L +R+ +R++D RL+ +S++ A K A LA CL+ + K RP M+ Sbjct: 286 PPGEQKLVEWARPLLANKRKLFRVIDNRLQDQYSMEEACKVATLALRCLTFEIKLRPNMN 345 Query: 480 QVVEVLKPLPNLKDMASSSYFFQSMRQERAASLNNPNGSQSMKAQSTFARNGVQPMRSLS 301 +VV L+ + L + + R R + + + + K + FAR + + + Sbjct: 346 EVVSHLEHIQTLNEAGGRNIDMVQRRMRR----RSDSVAINQKPNAGFARQTAVGVIATA 401 Query: 300 Y-GPHASP 280 Y P SP Sbjct: 402 YPRPSDSP 409
>PBS1_ARATH (Q9FE20) Serine/threonine-protein kinase PBS1 (EC 2.7.11.1)| (AvrPphB susceptible protein 1) Length = 456 Score = 64.7 bits (156), Expect = 2e-10 Identities = 38/106 (35%), Positives = 52/106 (49%), Gaps = 3/106 (2%) Frame = -1 Query: 660 PNXEHNLVEWARPYLGERRRFYRLVDPRLEGNFSIKGAQKTAQLAHACLSRDPKARPLMS 481 P+ E NLV WARP +RR+F +L DPRL+G F + + +A C+ RPL++ Sbjct: 295 PHGEQNLVAWARPLFNDRRKFIKLADPRLKGRFPTRALYQALAVASMCIQEQAATRPLIA 354 Query: 480 QVVEVLKPLPNLKDMASSSYFFQSMRQERAASL---NNPNGSQSMK 352 VV L L N + S + R ER A L N+ G K Sbjct: 355 DVVTALSYLAN-QAYDPSKDDSRRNRDERGARLITRNDDGGGSGSK 399
>CX32_ARATH (P27450) Probable serine/threonine-protein kinase Cx32, chloroplast| precursor (EC 2.7.11.1) Length = 419 Score = 60.5 bits (145), Expect = 4e-09 Identities = 29/92 (31%), Positives = 53/92 (57%) Frame = -1 Query: 660 PNXEHNLVEWARPYLGERRRFYRLVDPRLEGNFSIKGAQKTAQLAHACLSRDPKARPLMS 481 P + +LV+W RP L + R +++D ++G ++ K A + A++ +C+ DPK RP M Sbjct: 300 PRGQESLVDWLRPELSNKHRVKQIMDKGIKGQYTTKVATEMARITLSCIEPDPKNRPHMK 359 Query: 480 QVVEVLKPLPNLKDMASSSYFFQSMRQERAAS 385 +VVEVL+ + L + + S Q++ +S Sbjct: 360 EVVEVLEHIQGLNVVPNRSSTKQAVANSSRSS 391
>RLCK7_ARATH (Q9LQQ8) Probable serine/threonine-protein kinase RLCKVII (EC| 2.7.11.1) Length = 423 Score = 58.2 bits (139), Expect = 2e-08 Identities = 26/70 (37%), Positives = 41/70 (58%) Frame = -1 Query: 651 EHNLVEWARPYLGERRRFYRLVDPRLEGNFSIKGAQKTAQLAHACLSRDPKARPLMSQVV 472 + NLV WARP +RR F ++VDP L+G + ++G + ++ C+ P RP++S VV Sbjct: 315 DQNLVGWARPLFKDRRNFPKMVDPLLQGQYPVRGLYQALAISAMCVQEQPTMRPVVSDVV 374 Query: 471 EVLKPLPNLK 442 L L + K Sbjct: 375 LALNFLASSK 384
>NORK_PEA (Q8LKZ1) Nodulation receptor kinase precursor (EC 2.7.11.1)| Length = 924 Score = 43.1 bits (100), Expect = 7e-04 Identities = 23/77 (29%), Positives = 40/77 (51%) Frame = -1 Query: 660 PNXEHNLVEWARPYLGERRRFYRLVDPRLEGNFSIKGAQKTAQLAHACLSRDPKARPLMS 481 P E +LVEWA+PY+ + +VDP ++G + + + ++A CL RP M Sbjct: 803 PRVEWSLVEWAKPYI-RASKVDEIVDPGIKGGYHAEALWRVVEVALQCLEPYSTYRPCMV 861 Query: 480 QVVEVLKPLPNLKDMAS 430 +V L+ +++ AS Sbjct: 862 DIVRELEDALIIENNAS 878
>NORK_MEDTR (Q8L4H4) Nodulation receptor kinase precursor (EC 2.7.11.1) (Does not| make infections protein 2) (Symbiosis receptor-like kinase) (MtSYMRK) Length = 925 Score = 43.1 bits (100), Expect = 7e-04 Identities = 23/77 (29%), Positives = 40/77 (51%) Frame = -1 Query: 660 PNXEHNLVEWARPYLGERRRFYRLVDPRLEGNFSIKGAQKTAQLAHACLSRDPKARPLMS 481 P E +LVEWA+PY+ + +VDP ++G + + + ++A CL RP M Sbjct: 804 PRIEWSLVEWAKPYI-RASKVDEIVDPGIKGGYHAEALWRVVEVALQCLEPYSTYRPCMV 862 Query: 480 QVVEVLKPLPNLKDMAS 430 +V L+ +++ AS Sbjct: 863 DIVRELEDALIIENNAS 879
>BAK1_ARATH (Q94F62) BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1| precursor (EC 2.7.11.1) (BRI1-associated receptor kinase 1) (Somatic embryogenesis receptor-like kinase 3) Length = 615 Score = 40.8 bits (94), Expect = 0.004 Identities = 21/61 (34%), Positives = 35/61 (57%) Frame = -1 Query: 642 LVEWARPYLGERRRFYRLVDPRLEGNFSIKGAQKTAQLAHACLSRDPKARPLMSQVVEVL 463 L++W + L E++ LVD L+GN+ + ++ Q+A C P RP MS+VV +L Sbjct: 505 LLDWVKGLLKEKK-LEALVDVDLQGNYKDEEVEQLIQVALLCTQSSPMERPKMSEVVRML 563 Query: 462 K 460 + Sbjct: 564 E 564
>SIRK_ARATH (O64483) Senescence-induced receptor-like serine/threonine-protein| kinase precursor (FLG22-induced receptor-like kinase 1) Length = 876 Score = 35.8 bits (81), Expect = 0.12 Identities = 18/46 (39%), Positives = 25/46 (54%) Frame = -1 Query: 591 LVDPRLEGNFSIKGAQKTAQLAHACLSRDPKARPLMSQVVEVLKPL 454 +VD RL + + A K +++A AC RP MSQVV LK + Sbjct: 800 IVDQRLRERYDVGSAWKMSEIALACTEHTSAQRPTMSQVVMELKQI 845
>NEK1_CAEEL (P84199) Serine/threonine-protein kinase D1044.8 (EC 2.7.11.1)| Length = 959 Score = 32.0 bits (71), Expect = 1.7 Identities = 25/106 (23%), Positives = 43/106 (40%), Gaps = 14/106 (13%) Frame = -1 Query: 531 LAHACLSRDPKARP------------LMSQVVEVLKPLPNLKDMASSSYFFQSMRQERAA 388 L +CL+ DP ARP L+ + +V + + DM +S + E + Sbjct: 673 LITSCLAPDPSARPDILKVSGMCGVRLLEYLDDVARQQASTSDMTASQSSYNIKIDESPS 732 Query: 387 SLNNPNGSQSMKAQS--TFARNGVQPMRSLSYGPHASPYRQSPRPN 256 SLN+ S +S T + P+ H+ ++PRP+ Sbjct: 733 SLNSSTSSYKRPGRSSKTSGSGKLPPINPAPRRNHSMSAGETPRPS 778
>EXS_ARATH (Q9LYN8) Leucine-rich repeat receptor protein kinase EXS precursor| (EC 2.7.11.1) (Extra sporogenous cells protein) (EXCESS MICROSPOROCYTES1 protein) Length = 1192 Score = 31.6 bits (70), Expect = 2.2 Identities = 21/65 (32%), Positives = 36/65 (55%), Gaps = 1/65 (1%) Frame = -1 Query: 645 NLVEWARPYLGERRRFYRLVDPRLEGNFSIKGAQ-KTAQLAHACLSRDPKARPLMSQVVE 469 NLV WA + + + ++DP L + ++K +Q + Q+A CL+ P RP M V++ Sbjct: 1130 NLVGWAIQKINQGKAV-DVIDPLLV-SVALKNSQLRLLQIAMLCLAETPAKRPNMLDVLK 1187 Query: 468 VLKPL 454 LK + Sbjct: 1188 ALKEI 1192
>GRPE_CORDI (Q6NEZ0) Protein grpE (HSP-70 cofactor)| Length = 219 Score = 31.2 bits (69), Expect = 2.9 Identities = 15/34 (44%), Positives = 18/34 (52%) Frame = -3 Query: 391 RKPQQPKW*PEHEGTEHLCTERRAANEEPLLRSA 290 R+P QP+W E EHL A EE L+ SA Sbjct: 12 RRPGQPEWDDEENNFEHLDATEVPAEEEALVESA 45
>DBF4_YEAST (P32325) Protein DBF4 (Protein DNA52)| Length = 704 Score = 31.2 bits (69), Expect = 2.9 Identities = 13/26 (50%), Positives = 16/26 (61%) Frame = -2 Query: 308 ASPTVRTLLHTASLQGPTANSPKTHR 231 A+PT+ LLH L GPT P+T R Sbjct: 230 AAPTLSNLLHNEKLYGPTDRDPRTKR 255
>ECR_AEDAE (P49880) Ecdysone receptor (Ecdysteroid receptor)| (20-hydroxy-ecdysone receptor) (20E receptor) (EcRH) Length = 675 Score = 30.8 bits (68), Expect = 3.7 Identities = 25/98 (25%), Positives = 41/98 (41%), Gaps = 2/98 (2%) Frame = -1 Query: 534 QLAHACLSRDPKARPLMSQVVEV--LKPLPNLKDMASSSYFFQSMRQERAASLNNPNGSQ 361 Q + C S K R L + E+ ++ +P S+ QS ++S ++ NGS Sbjct: 545 QNSEMCFSLKLKNRKLPRFLEEIWDVQDIPPSMQAQMHSHGTQSSSSSSSSSSSSSNGSS 604 Query: 360 SMKAQSTFARNGVQPMRSLSYGPHASPYRQSPRPNGKQ 247 + + S S +GPH P+ Q PN +Q Sbjct: 605 NGNSSSN--------SNSSQHGPHPHPHGQQLTPNQQQ 634
>POL1_GCMV (P13025) RNA1 polyprotein (P1) [Contains: P1A protein (1A)| (Protease cofactor); Putative ATP-dependent helicase (EC 3.6.1.-) (NTP-binding protein) (NTB) (1B) (Membrane-binding protein); Viral genome-linked protein (1C-VPg); Picornain 3C-like pr Length = 2252 Score = 30.4 bits (67), Expect = 4.9 Identities = 25/71 (35%), Positives = 29/71 (40%), Gaps = 5/71 (7%) Frame = +1 Query: 283 RSVRTVGEAPH----WLHAVPCKGALCLHALATIWVVEACGTF-LTHGLEEVGGASHVFQ 447 RSV E PH VP KG + A WVV CG F TH S V Sbjct: 291 RSVAAEVEVPHTRNPMAELVPYKGLGAVSADPRCWVVAQCGKFSATHANLCSEIYSMVIG 350 Query: 448 VWKRLQDFNHL 480 W +L DF+ + Sbjct: 351 PWVQLTDFSSI 361
>NEK9_XENLA (Q7ZZC8) Serine/threonine-protein kinase Nek9 (EC 2.7.11.1)| (NimA-related protein kinase 9) (XNek9) (Nercc1 kinase) Length = 944 Score = 30.4 bits (67), Expect = 4.9 Identities = 10/26 (38%), Positives = 18/26 (69%) Frame = -1 Query: 546 QKTAQLAHACLSRDPKARPLMSQVVE 469 Q+ ++ HACL +DP+ RP +++E Sbjct: 261 QELIEVVHACLEQDPEKRPTADEILE 286
>VGFR3_HUMAN (P35916) Vascular endothelial growth factor receptor 3 precursor (EC| 2.7.10.1) (VEGFR-3) (Tyrosine-protein kinase receptor FLT4) Length = 1298 Score = 30.0 bits (66), Expect = 6.4 Identities = 13/22 (59%), Positives = 16/22 (72%) Frame = -1 Query: 519 CLSRDPKARPLMSQVVEVLKPL 454 C S DPKARP S++VE+L L Sbjct: 1151 CWSGDPKARPAFSELVEILGDL 1172
>VGFR3_RAT (Q91ZT1) Vascular endothelial growth factor receptor 3 precursor (EC| 2.7.10.1) (VEGFR-3) (Tyrosine-protein kinase receptor FLT4) Length = 1363 Score = 30.0 bits (66), Expect = 6.4 Identities = 13/26 (50%), Positives = 17/26 (65%) Frame = -1 Query: 531 LAHACLSRDPKARPLMSQVVEVLKPL 454 + +C S DPKARP S +VE+L L Sbjct: 1147 IMQSCWSGDPKARPAFSDLVEILGDL 1172
>VGFR3_MOUSE (P35917) Vascular endothelial growth factor receptor 3 precursor (EC| 2.7.10.1) (VEGFR-3) (Tyrosine-protein kinase receptor FLT4) Length = 1363 Score = 30.0 bits (66), Expect = 6.4 Identities = 13/26 (50%), Positives = 17/26 (65%) Frame = -1 Query: 531 LAHACLSRDPKARPLMSQVVEVLKPL 454 + +C S DPKARP S +VE+L L Sbjct: 1147 IMQSCWSGDPKARPAFSDLVEILGDL 1172
>CCAR1_HUMAN (Q8IX12) Cell division cycle and apoptosis regulator protein 1| (Cell cycle and apoptosis regulatory protein 1) (CARP-1) (Death inducer with SAP domain) Length = 1150 Score = 30.0 bits (66), Expect = 6.4 Identities = 28/95 (29%), Positives = 40/95 (42%) Frame = -2 Query: 401 KNVPQASTTQMVARA*RHRAPLHGTACSQ*GASPTVRTLLHTASLQGPTANSPKTHRFTM 222 KN P A TQ A A A L S GASPT+ T + G T +P ++ T Sbjct: 8 KNPPWA--TQFTATAVSQPAALGVQQPSLLGASPTIYTQQTALAAAGLTTQTPANYQLTQ 65 Query: 221 TGSKVGFSSSTDG*MVRALAVASVAVDRQISRCHQ 117 T + + + A A+ A+ +Q S+ Q Sbjct: 66 TAA-----------LQQQAAAAAAALQQQYSQPQQ 89
>PSKR_ARATH (Q9ZVR7) Putative phytosulfokine receptor precursor (EC 2.7.11.1)| (Phytosulfokine LRR receptor kinase) Length = 1008 Score = 30.0 bits (66), Expect = 6.4 Identities = 19/66 (28%), Positives = 29/66 (43%) Frame = -1 Query: 660 PNXEHNLVEWARPYLGERRRFYRLVDPRLEGNFSIKGAQKTAQLAHACLSRDPKARPLMS 481 P +L+ W E R + DP + + K + ++A CLS +PK RP Sbjct: 941 PKGCRDLISWVVKMKHESRAS-EVFDPLIYSKENDKEMFRVLEIACLCLSENPKQRPTTQ 999 Query: 480 QVVEVL 463 Q+V L Sbjct: 1000 QLVSWL 1005
>PSKR_DAUCA (Q8LPB4) Phytosulfokine receptor precursor (EC 2.7.11.1)| (Phytosulfokine LRR receptor kinase) Length = 1021 Score = 29.6 bits (65), Expect = 8.3 Identities = 17/67 (25%), Positives = 28/67 (41%) Frame = -1 Query: 660 PNXEHNLVEWARPYLGERRRFYRLVDPRLEGNFSIKGAQKTAQLAHACLSRDPKARPLMS 481 P +L+ W E+R + DP + + ++A CL +PK RP Sbjct: 950 PRGSRDLISWVLQMKTEKRES-EIFDPFIYDKDHAEEMLLVLEIACRCLGENPKTRPTTQ 1008 Query: 480 QVVEVLK 460 Q+V L+ Sbjct: 1009 QLVSWLE 1015
>CHLN_NEPOL (Q9T4F6) Light-independent protochlorophyllide reductase subunit N| (EC 1.18.-.-) (LI-POR subunit N) (DPOR subunit N) Length = 431 Score = 29.6 bits (65), Expect = 8.3 Identities = 17/58 (29%), Positives = 26/58 (44%) Frame = +1 Query: 373 WVVEACGTFLTHGLEEVGGASHVFQVWKRLQDFNHLAHERPSLRIPAKASMCQLSRLL 546 W+ + C F GLE G A QVW +L+D+ L + + + L+R L Sbjct: 266 WIEKICHVF---GLETTGLAERERQVWSQLEDYLSLVRGKSAFLMGDNLLEISLARFL 320 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 98,615,000 Number of Sequences: 219361 Number of extensions: 2102282 Number of successful extensions: 5239 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 5031 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5232 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6314008338 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
