ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal1d14
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_189451.1| Oryza sativa (japonica cultivar-group), predic... 194 2e-46
2dbj|AK098940.1| Oryza sativa (japonica cultivar-group) cDNA clon... 194 2e-46
3dbj|AK058329.1| Oryza sativa (japonica cultivar-group) cDNA clon... 131 2e-27
4dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 111 2e-21
5dbj|AP003277.2| Oryza sativa (japonica cultivar-group) genomic D... 111 2e-21
6gb|AY108447.1| Zea mays PCO077050 mRNA sequence 111 2e-21
7gb|AC144644.3| Medicago truncatula clone mth2-14l3, complete seq... 44 0.42
8gb|AC009264.6|AC009264 Homo sapiens chromosome 7 clone RP11-271F... 44 0.42
9gb|AC009332.6|AC009332 Homo sapiens chromosome 7 clone RP11-348O... 44 0.42
10gb|BT016048.1| Drosophila melanogaster LP19671 full insert cDNA 42 1.7
11emb|BX957269.5| Zebrafish DNA sequence from clone CH211-12C22 in... 42 1.7
12emb|AL590155.9| Zebrafish DNA sequence from clone RP71-79P20 in ... 42 1.7
13emb|BX005430.14| Zebrafish DNA sequence from clone DKEY-19E4 in ... 42 1.7
14ref|NM_143000.1| Drosophila melanogaster CG17782-RA (CG17782), mRNA 42 1.7
15gb|AC008204.9|AC008204 Drosophila melanogaster, chromosome 3R, r... 42 1.7
16dbj|AB044334.2| Mus musculus CAST gene for calpastatin type I, I... 42 1.7
17gb|AC154780.2| Mus musculus BAC clone RP24-462E4 from 13, comple... 42 1.7
18emb|AL954725.9| Zebrafish DNA sequence from clone DKEY-11H11 in ... 42 1.7
19emb|CR847530.19| Zebrafish DNA sequence from clone DKEY-14I17 in... 42 1.7
20gb|AE003747.3| Drosophila melanogaster chromosome 3R, section 85... 42 1.7
21gb|AC145568.4| Mus musculus BAC clone RP24-473H20 from 6, comple... 42 1.7
22ref|XM_534935.2| PREDICTED: Canis familiaris similar to Cat eye ... 40 6.5
23gb|AC124351.3| Mus musculus BAC clone RP24-467D20 from chromosom... 40 6.5
24gb|AC156442.2| Volvox carteri clone JGIAOBO-17L7, complete sequence 40 6.5
25dbj|BS000061.1| Pan troglodytes chromosome 22 clone:PTB-027C13, ... 40 6.5
26emb|BX248111.7| Zebrafish DNA sequence from clone DKEY-22L11 in ... 40 6.5
27gb|AC138156.3| Carollia perspicillata clone 41M6, complete sequence 40 6.5 
>ref|NM_189451.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 984

 Score =  194 bits (98), Expect = 2e-46
 Identities = 209/248 (84%)
 Strand = Plus / Minus

                                                                       
Query: 237 tgtactcctggctccgcgaccactcgtccatctgnngggctcgcatcacggncaaagggt 296
           |||||||  ||||||  ||||||||||| ||||   ||||||||||||| | || ||| |
Sbjct: 928 tgtactctcggctcctggaccactcgtcgatctcgcgggctcgcatcaccggcagaggat 869

                                                                       
Query: 297 gcgacagctccctcgtctgagcgttccggatgtaccacccgaccgggtnngacgatgcct 356
           |||||||||| |||||||||||||||||||||||||| ||||| ||||  ||||  || |
Sbjct: 868 gcgacagctctctcgtctgagcgttccggatgtaccagccgacggggtttgacgcagctt 809

                                                                       
Query: 357 tgtcgtacgaccgggcttgctccaggaaggcgtncacgttcagctggtccgacagcgaag 416
           ||||||| || || ||||||||||||||||||| |||||||||||||||||  ||||| |
Sbjct: 808 tgtcgtaggagcgagcttgctccaggaaggcgtccacgttcagctggtccgcaagcgacg 749

                                                                       
Query: 417 ggcatcctcccgccagcttcatcaggaccgagatgacaaccttgggatcttttactacga 476
           |||| ||||| ||||| |||||||| || || || ||||||||||| || |  ||||| |
Sbjct: 748 ggcaccctccggccagtttcatcagcacagatatcacaaccttggggtcctgcactacaa 689

                   
Query: 477 gaagagcc 484
           ||||||||
Sbjct: 688 gaagagcc 681
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>dbj|AK098940.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013043D06, full
           insert sequence
          Length = 1250

 Score =  194 bits (98), Expect = 2e-46
 Identities = 209/248 (84%)
 Strand = Plus / Minus

                                                                       
Query: 237 tgtactcctggctccgcgaccactcgtccatctgnngggctcgcatcacggncaaagggt 296
           |||||||  ||||||  ||||||||||| ||||   ||||||||||||| | || ||| |
Sbjct: 982 tgtactctcggctcctggaccactcgtcgatctcgcgggctcgcatcaccggcagaggat 923

                                                                       
Query: 297 gcgacagctccctcgtctgagcgttccggatgtaccacccgaccgggtnngacgatgcct 356
           |||||||||| |||||||||||||||||||||||||| ||||| ||||  ||||  || |
Sbjct: 922 gcgacagctctctcgtctgagcgttccggatgtaccagccgacggggtttgacgcagctt 863

                                                                       
Query: 357 tgtcgtacgaccgggcttgctccaggaaggcgtncacgttcagctggtccgacagcgaag 416
           ||||||| || || ||||||||||||||||||| |||||||||||||||||  ||||| |
Sbjct: 862 tgtcgtaggagcgagcttgctccaggaaggcgtccacgttcagctggtccgcaagcgacg 803

                                                                       
Query: 417 ggcatcctcccgccagcttcatcaggaccgagatgacaaccttgggatcttttactacga 476
           |||| ||||| ||||| |||||||| || || || ||||||||||| || |  ||||| |
Sbjct: 802 ggcaccctccggccagtttcatcagcacagatatcacaaccttggggtcctgcactacaa 743

                   
Query: 477 gaagagcc 484
           ||||||||
Sbjct: 742 gaagagcc 735
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>dbj|AK058329.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-014-C02, full
           insert sequence
          Length = 1127

 Score =  131 bits (66), Expect = 2e-27
 Identities = 200/248 (80%), Gaps = 9/248 (3%)
 Strand = Plus / Minus

                                                                       
Query: 237 tgtactcctggctccgcgaccactcgtccatctgnngggctcgcatcacggncaaagggt 296
           |||||||  ||||||  ||||||||||| ||||   ||||||||||||| | || ||| |
Sbjct: 953 tgtactctcggctcctggaccactcgtcgatctcgcgggctcgcatcaccggcagaggat 894

                                                                       
Query: 297 gcgacagctccctcgtctgagcgttccggatgtaccacccgaccgggtnngacgatgcct 356
           |||||||||| |||||||||||||||         || ||||| ||||  ||||  || |
Sbjct: 893 gcgacagctctctcgtctgagcgttc---------cagccgacggggtttgacgcagctt 843

                                                                       
Query: 357 tgtcgtacgaccgggcttgctccaggaaggcgtncacgttcagctggtccgacagcgaag 416
           ||||||| || || ||||||||||||||||||| |||||||||||||||||  ||||| |
Sbjct: 842 tgtcgtaggagcgagcttgctccaggaaggcgtccacgttcagctggtccgcaagcgacg 783

                                                                       
Query: 417 ggcatcctcccgccagcttcatcaggaccgagatgacaaccttgggatcttttactacga 476
           |||| ||||| ||||| |||||||| || || || ||||||||||| || |  ||||| |
Sbjct: 782 ggcaccctccggccagtttcatcagcacagatatcacaaccttggggtcctgcactacaa 723

                   
Query: 477 gaagagcc 484
           ||||||||
Sbjct: 722 gaagagcc 715
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  111 bits (56), Expect = 2e-21
 Identities = 116/137 (84%)
 Strand = Plus / Plus

                                                                            
Query: 322      ccggatgtaccacccgaccgggtnngacgatgccttgtcgtacgaccgggcttgctccag 381
                |||||||||||| ||||| ||||  ||||  || |||||||| || || |||||||||||
Sbjct: 42818986 ccggatgtaccagccgacggggtttgacgcagctttgtcgtaggagcgagcttgctccag 42819045

                                                                            
Query: 382      gaaggcgtncacgttcagctggtccgacagcgaagggcatcctcccgccagcttcatcag 441
                |||||||| |||||||||||||||||  ||||| ||||| ||||| ||||| ||||||||
Sbjct: 42819046 gaaggcgtccacgttcagctggtccgcaagcgacgggcaccctccggccagtttcatcag 42819105

                                 
Query: 442      gaccgagatgacaacct 458
                 || || || |||||||
Sbjct: 42819106 cacagatatcacaacct 42819122



 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 74/87 (85%)
 Strand = Plus / Plus

                                                                            
Query: 237      tgtactcctggctccgcgaccactcgtccatctgnngggctcgcatcacggncaaagggt 296
                |||||||  ||||||  ||||||||||| ||||   ||||||||||||| | || ||| |
Sbjct: 42818794 tgtactctcggctcctggaccactcgtcgatctcgcgggctcgcatcaccggcagaggat 42818853

                                           
Query: 297      gcgacagctccctcgtctgagcgttcc 323
                |||||||||| ||||||||||||||||
Sbjct: 42818854 gcgacagctctctcgtctgagcgttcc 42818880
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>dbj|AP003277.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0518C01
          Length = 173555

 Score =  111 bits (56), Expect = 2e-21
 Identities = 116/137 (84%)
 Strand = Plus / Plus

                                                                         
Query: 322   ccggatgtaccacccgaccgggtnngacgatgccttgtcgtacgaccgggcttgctccag 381
             |||||||||||| ||||| ||||  ||||  || |||||||| || || |||||||||||
Sbjct: 12720 ccggatgtaccagccgacggggtttgacgcagctttgtcgtaggagcgagcttgctccag 12779

                                                                         
Query: 382   gaaggcgtncacgttcagctggtccgacagcgaagggcatcctcccgccagcttcatcag 441
             |||||||| |||||||||||||||||  ||||| ||||| ||||| ||||| ||||||||
Sbjct: 12780 gaaggcgtccacgttcagctggtccgcaagcgacgggcaccctccggccagtttcatcag 12839

                              
Query: 442   gaccgagatgacaacct 458
              || || || |||||||
Sbjct: 12840 cacagatatcacaacct 12856



 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 74/87 (85%)
 Strand = Plus / Plus

                                                                         
Query: 237   tgtactcctggctccgcgaccactcgtccatctgnngggctcgcatcacggncaaagggt 296
             |||||||  ||||||  ||||||||||| ||||   ||||||||||||| | || ||| |
Sbjct: 12528 tgtactctcggctcctggaccactcgtcgatctcgcgggctcgcatcaccggcagaggat 12587

                                        
Query: 297   gcgacagctccctcgtctgagcgttcc 323
             |||||||||| ||||||||||||||||
Sbjct: 12588 gcgacagctctctcgtctgagcgttcc 12614
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>gb|AY108447.1| Zea mays PCO077050 mRNA sequence
          Length = 636

 Score =  111 bits (56), Expect = 2e-21
 Identities = 179/222 (80%)
 Strand = Plus / Minus

                                                                       
Query: 237 tgtactcctggctccgcgaccactcgtccatctgnngggctcgcatcacggncaaagggt 296
           ||||||||||||| |  |||||||| || ||||    |||||||||||| | ||||||||
Sbjct: 255 tgtactcctggcttcttgaccactcatcgatctctctggctcgcatcacaggcaaagggt 196

                                                                       
Query: 297 gcgacagctccctcgtctgagcgttccggatgtaccacccgaccgggtnngacgatgcct 356
           | || ||||| || || || || ||||||||||||||||| || ||||  || |  ||||
Sbjct: 195 gtgaaagctctctggtttgtgcattccggatgtaccacccaactgggttcgatgcagcct 136

                                                                       
Query: 357 tgtcgtacgaccgggcttgctccaggaaggcgtncacgttcagctggtccgacagcgaag 416
           |||||||||| || ||||||||||||||||| | ||| || |||| ||| |  || || |
Sbjct: 135 tgtcgtacgaacgagcttgctccaggaaggcatccacatttagcttgtcggcaagagatg 76

                                                     
Query: 417 ggcatcctcccgccagcttcatcaggaccgagatgacaacct 458
           |||||||||| ||||  |||||||| || |||||||| ||||
Sbjct: 75  ggcatcctccggccaatttcatcagaacagagatgactacct 34
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>gb|AC144644.3| Medicago truncatula clone mth2-14l3, complete sequence
          Length = 117645

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 160    tgtaattcagttcatttcattc 181
              ||||||||||||||||||||||
Sbjct: 110332 tgtaattcagttcatttcattc 110311
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>gb|AC009264.6|AC009264 Homo sapiens chromosome 7 clone RP11-271F4, complete sequence
          Length = 164824

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 170   ttcatttcattcatacacaggc 191
             ||||||||||||||||||||||
Sbjct: 32915 ttcatttcattcatacacaggc 32936
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>gb|AC009332.6|AC009332 Homo sapiens chromosome 7 clone RP11-348O21, complete sequence
          Length = 148471

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 170   ttcatttcattcatacacaggc 191
             ||||||||||||||||||||||
Sbjct: 55900 ttcatttcattcatacacaggc 55921
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>gb|BT016048.1| Drosophila melanogaster LP19671 full insert cDNA
          Length = 1504

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 118 accaccaccagcgcacccacc 138
           |||||||||||||||||||||
Sbjct: 970 accaccaccagcgcacccacc 990
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>emb|BX957269.5| Zebrafish DNA sequence from clone CH211-12C22 in linkage group 6,
             complete sequence
          Length = 174814

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 162   taattcagttcatttcattca 182
             |||||||||||||||||||||
Sbjct: 77639 taattcagttcatttcattca 77659
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>emb|AL590155.9| Zebrafish DNA sequence from clone RP71-79P20 in linkage group 23
             Contains part of the putative novel DIRS-1 like
             retrotransposon DIRSDR2 (DIRS-1 Danio rerio 2), the 5' end
             of a novel gene and four CpG islands, complete sequence
          Length = 161731

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 162   taattcagttcatttcattca 182
             |||||||||||||||||||||
Sbjct: 95302 taattcagttcatttcattca 95282
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>emb|BX005430.14| Zebrafish DNA sequence from clone DKEY-19E4 in linkage group 6, complete
              sequence
          Length = 209866

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 162    taattcagttcatttcattca 182
              |||||||||||||||||||||
Sbjct: 155113 taattcagttcatttcattca 155093
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>ref|NM_143000.1| Drosophila melanogaster CG17782-RA (CG17782), mRNA
          Length = 1440

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 118 accaccaccagcgcacccacc 138
           |||||||||||||||||||||
Sbjct: 943 accaccaccagcgcacccacc 963
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>gb|AC008204.9|AC008204 Drosophila melanogaster, chromosome 3R, region 95E-95F, BAC clone
              BACR04E17, complete sequence
          Length = 199016

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 118    accaccaccagcgcacccacc 138
              |||||||||||||||||||||
Sbjct: 120897 accaccaccagcgcacccacc 120877
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>dbj|AB044334.2| Mus musculus CAST gene for calpastatin type I, II, III, IV-L, IV-S,
             complete cds
          Length = 34223

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 28/29 (96%), Gaps = 1/29 (3%)
 Strand = Plus / Minus

                                          
Query: 155   tctactgtaattcagttcat-ttcattca 182
             |||||||||||||||||||| ||||||||
Sbjct: 27141 tctactgtaattcagttcatattcattca 27113
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>gb|AC154780.2| Mus musculus BAC clone RP24-462E4 from 13, complete sequence
          Length = 161998

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 28/29 (96%), Gaps = 1/29 (3%)
 Strand = Plus / Plus

                                          
Query: 155   tctactgtaattcagttcat-ttcattca 182
             |||||||||||||||||||| ||||||||
Sbjct: 50148 tctactgtaattcagttcatattcattca 50176
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>emb|AL954725.9| Zebrafish DNA sequence from clone DKEY-11H11 in linkage group 23,
             complete sequence
          Length = 219971

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 162   taattcagttcatttcattca 182
             |||||||||||||||||||||
Sbjct: 85223 taattcagttcatttcattca 85203
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>emb|CR847530.19| Zebrafish DNA sequence from clone DKEY-14I17 in linkage group 20,
             complete sequence
          Length = 144640

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 162   taattcagttcatttcattca 182
             |||||||||||||||||||||
Sbjct: 82558 taattcagttcatttcattca 82538
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>gb|AE003747.3| Drosophila melanogaster chromosome 3R, section 85 of 118 of the complete
              sequence
          Length = 206741

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 118    accaccaccagcgcacccacc 138
              |||||||||||||||||||||
Sbjct: 121153 accaccaccagcgcacccacc 121133
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>gb|AC145568.4| Mus musculus BAC clone RP24-473H20 from 6, complete sequence
          Length = 201210

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 183   tacacaggcaggcaggacaga 203
             |||||||||||||||||||||
Sbjct: 99768 tacacaggcaggcaggacaga 99748
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>ref|XM_534935.2| PREDICTED: Canis familiaris similar to Cat eye syndrome critical
            region protein 2 (LOC477738), mRNA
          Length = 4445

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 38   cagtcacatgtaccgatcat 57
            ||||||||||||||||||||
Sbjct: 2049 cagtcacatgtaccgatcat 2068
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>gb|AC124351.3| Mus musculus BAC clone RP24-467D20 from chromosome 8, complete sequence
          Length = 122811

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 86    tatacccaactctactgatt 105
             ||||||||||||||||||||
Sbjct: 64895 tatacccaactctactgatt 64876
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>gb|AC156442.2| Volvox carteri clone JGIAOBO-17L7, complete sequence
          Length = 36802

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 175  ttcattcatacacaggcaggcagg 198
            ||||||||||| ||||||||||||
Sbjct: 3382 ttcattcatacgcaggcaggcagg 3405
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>dbj|BS000061.1| Pan troglodytes chromosome 22 clone:PTB-027C13, map 22, complete
             sequences
          Length = 164304

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 163   aattcagttcatttcattca 182
             ||||||||||||||||||||
Sbjct: 80169 aattcagttcatttcattca 80188
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>emb|BX248111.7| Zebrafish DNA sequence from clone DKEY-22L11 in linkage group 4, complete
              sequence
          Length = 185023

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 163    aattcagttcatttcattca 182
              ||||||||||||||||||||
Sbjct: 179098 aattcagttcatttcattca 179117
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>gb|AC138156.3| Carollia perspicillata clone 41M6, complete sequence
          Length = 123894

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 159    ctgtaattcagttcatttcattca 182
              ||||||||||||| ||||||||||
Sbjct: 115360 ctgtaattcagtttatttcattca 115383


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,940,592
Number of Sequences: 3902068
Number of extensions: 2940592
Number of successful extensions: 67257
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 67202
Number of HSP's gapped (non-prelim): 55
length of query: 484
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 462
effective length of database: 17,147,199,772
effective search space: 7922006294664
effective search space used: 7922006294664
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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