ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags25c13
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_468187.1| Oryza sativa (japonica cultivar-group), mRNA 117 3e-23
2ref|XM_468186.1| Oryza sativa (japonica cultivar-group), mRNA 117 3e-23
3dbj|AK060825.1| Oryza sativa (japonica cultivar-group) cDNA clon... 117 3e-23
4gb|AY106678.1| Zea mays PCO130308 mRNA sequence 111 2e-21
5dbj|AK066747.1| Oryza sativa (japonica cultivar-group) cDNA clon... 109 8e-21
6dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 48 0.025
7dbj|AP005535.3| Oryza sativa (japonica cultivar-group) genomic D... 48 0.025
8dbj|AP003984.3| Oryza sativa (japonica cultivar-group) genomic D... 48 0.025
9ref|NM_129684.2| Arabidopsis thaliana amino acid permease AT2G41... 42 1.6
10gb|AF487277.1| Lecanicillium muscarium, complete genome 42 1.6
11ref|XM_816496.1| Trypanosoma cruzi strain CL Brener hypothetical... 42 1.6
12gb|BT000792.1| Arabidopsis thaliana clone RAFL05-20-J01 (R10342)... 42 1.6
13gb|AY079364.1| Arabidopsis thaliana unknown protein (At2g41190) ... 42 1.6
14gb|AY039978.1| Arabidopsis thaliana unknown protein (At2g41190) ... 42 1.6
15emb|X55026.1|MTPACG Podospora anserina complete mitochondrial ge... 42 1.6
16gb|AY945289.1| Fusarium oxysporum strain F11 mitochondrion, comp... 42 1.6
17emb|X13337.1|MINCND2D Neurospora crassa mitochondrial DNA with d... 42 1.6
18gb|AF447590.1| Hypocrea jecorina mitochondrion, complete genome 42 1.6
19gb|AY548158.1| Neurospora intermedia isolate M1991-60 tRNA-Met g... 42 1.6
20emb|Z34001.1|NCMT19SRR N.crassa (74-OR23-1A (FGSC #2489)) mitoch... 42 1.6
21gb|AY874423.1| Fusarium oxysporum voucher VPRI 19292 mitochondri... 42 1.6
22gb|AF029891.1|AF029891 Cryphonectria parasitica small subunit ri... 42 1.6
23emb|X14734.1|MIPASMRR Podospora anserina mtDNA for small subunit... 42 1.6
24emb|Z69896.1|MTPCSSURR P.curvicolla mitochondrial small subunit ... 42 1.6
25gb|L33367.1|NEU19RRTR Neurospora crassa (clone p19StyrB1) mitoch... 42 1.6
26gb|J05254.1|NEUMTRG N.crassa mitochondrial small (19S) rRNA and ... 42 1.6
27gb|AC119932.7| Mus musculus chromosome 15, clone RP24-260C11, co... 40 6.2
28ref|NM_175526.1| Mus musculus C-type lectin domain family 1, mem... 40 6.2
29gb|AC140313.2| Mus musculus BAC clone RP24-324C6 from chromosome... 40 6.2
30gb|AC098734.3| Mus musculus BAC clone RP23-121L4 from 14, comple... 40 6.2
31gb|AC114559.8| Mus musculus, clone RP23-50G21, complete sequence 40 6.2
32gb|AC161602.4| Mus musculus BAC clone RP23-336I5 from chromosome... 40 6.2
33gb|AE014173.1| Mus musculus piebald deletion region section 1 of... 40 6.2
34gb|AC080021.3| Genomic sequence for Mus musculus, clone RP23-422... 40 6.2
35dbj|AK031121.1| Mus musculus 13 days embryo forelimb cDNA, RIKEN... 40 6.2
36dbj|AK036846.1| Mus musculus adult female vagina cDNA, RIKEN ful... 40 6.2
37gb|AC009496.3| Homo sapiens BAC clone RP11-500G18 from 2, comple... 40 6.2
38dbj|BA000001.2| Pyrococcus horikoshii OT3 DNA, complete genome 40 6.2
39gb|AC138620.4| Mus musculus BAC clone RP23-250E1 from 6, complet... 40 6.2 
>ref|XM_468187.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2143

 Score =  117 bits (59), Expect = 3e-23
 Identities = 125/147 (85%)
 Strand = Plus / Minus

                                                                        
Query: 309  atcttcaagaagcacaaggcgggcattatgacagccacaagtatactgagcagggatcca 368
            ||||||||||||||||  || ||||||||||| |||||||||||||| | ||| ||||||
Sbjct: 1791 atcttcaagaagcacagtgcaggcattatgacggccacaagtatactcaacagagatcca 1732

                                                                        
Query: 369  atcagagccatcaccaaaccgaagaatggaagaagaaatgcaatgacaacagttgatgcc 428
            || ||||||||||| | |||||| ||||| | |||||| ||||||   || |||||||| 
Sbjct: 1731 ataagagccatcacgagaccgaaaaatggcataagaaacgcaatgcacacggttgatgca 1672

                                       
Query: 429  acaaggctcgtcctcagtataatagag 455
            ||||||   ||||||||||||||||||
Sbjct: 1671 acaagggcagtcctcagtataatagag 1645
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>ref|XM_468186.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 864

 Score =  117 bits (59), Expect = 3e-23
 Identities = 125/147 (85%)
 Strand = Plus / Minus

                                                                       
Query: 309 atcttcaagaagcacaaggcgggcattatgacagccacaagtatactgagcagggatcca 368
           ||||||||||||||||  || ||||||||||| |||||||||||||| | ||| ||||||
Sbjct: 743 atcttcaagaagcacagtgcaggcattatgacggccacaagtatactcaacagagatcca 684

                                                                       
Query: 369 atcagagccatcaccaaaccgaagaatggaagaagaaatgcaatgacaacagttgatgcc 428
           || ||||||||||| | |||||| ||||| | |||||| ||||||   || |||||||| 
Sbjct: 683 ataagagccatcacgagaccgaaaaatggcataagaaacgcaatgcacacggttgatgca 624

                                      
Query: 429 acaaggctcgtcctcagtataatagag 455
           ||||||   ||||||||||||||||||
Sbjct: 623 acaagggcagtcctcagtataatagag 597
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>dbj|AK060825.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-B05, full
           insert sequence
          Length = 1219

 Score =  117 bits (59), Expect = 3e-23
 Identities = 125/147 (85%)
 Strand = Plus / Minus

                                                                       
Query: 309 atcttcaagaagcacaaggcgggcattatgacagccacaagtatactgagcagggatcca 368
           ||||||||||||||||  || ||||||||||| |||||||||||||| | ||| ||||||
Sbjct: 722 atcttcaagaagcacagtgcaggcattatgacggccacaagtatactcaacagagatcca 663

                                                                       
Query: 369 atcagagccatcaccaaaccgaagaatggaagaagaaatgcaatgacaacagttgatgcc 428
           || ||||||||||| | |||||| ||||| | |||||| ||||||   || |||||||| 
Sbjct: 662 ataagagccatcacgagaccgaaaaatggcataagaaacgcaatgcacacggttgatgca 603

                                      
Query: 429 acaaggctcgtcctcagtataatagag 455
           ||||||   ||||||||||||||||||
Sbjct: 602 acaagggcagtcctcagtataatagag 576
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>gb|AY106678.1| Zea mays PCO130308 mRNA sequence
          Length = 920

 Score =  111 bits (56), Expect = 2e-21
 Identities = 134/160 (83%)
 Strand = Plus / Minus

                                                                       
Query: 294 gctttattctgtgcgatcttcaagaagcacaaggcgggcattatgacagccacaagtata 353
           ||||| ||||| |||||||||| ||| |||||||  ||||||||||| ||||||||||||
Sbjct: 604 gctttgttctgcgcgatcttcaggaaacacaagggtggcattatgactgccacaagtata 545

                                                                       
Query: 354 ctgagcagggatccaatcagagccatcaccaaaccgaagaatggaagaagaaatgcaatg 413
           || || || |||||||| |||| |||||| | ||| ||||| || |||||||| ||||||
Sbjct: 544 ctaagaagagatccaatgagagacatcacaagaccaaagaacggcagaagaaaggcaatg 485

                                                   
Query: 414 acaacagttgatgccacaaggctcgtcctcagtataatag 453
              ||||||||||| | ||||   ||||||||||||||||
Sbjct: 484 catacagttgatgcaagaagggcagtcctcagtataatag 445
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>dbj|AK066747.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013088E05, full
            insert sequence
          Length = 2143

 Score =  109 bits (55), Expect = 8e-21
 Identities = 124/147 (84%)
 Strand = Plus / Minus

                                                                        
Query: 309  atcttcaagaagcacaaggcgggcattatgacagccacaagtatactgagcagggatcca 368
            ||||||||||||||||  || ||||||||||| |||||||||||||| | ||| ||||||
Sbjct: 1791 atcttcaagaagcacagtgcaggcattatgacggccacaagtatactcaacagagatcca 1732

                                                                        
Query: 369  atcagagccatcaccaaaccgaagaatggaagaagaaatgcaatgacaacagttgatgcc 428
            || ||||||||||| | |||||| ||||| | |||||| ||||||   || ||||| || 
Sbjct: 1731 ataagagccatcacgagaccgaaaaatggcataagaaacgcaatgcacacggttgacgca 1672

                                       
Query: 429  acaaggctcgtcctcagtataatagag 455
            ||||||   ||||||||||||||||||
Sbjct: 1671 acaagggcagtcctcagtataatagag 1645
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 48.1 bits (24), Expect = 0.025
 Identities = 36/40 (90%)
 Strand = Plus / Plus

                                                        
Query: 343      ccacaagtatactgagcagggatccaatcagagccatcac 382
                ||||||||||||| | ||| |||||||| |||||||||||
Sbjct: 33531192 ccacaagtatactcaacagagatccaataagagccatcac 33531231



 Score = 44.1 bits (22), Expect = 0.40
 Identities = 58/70 (82%)
 Strand = Plus / Plus

                                                                            
Query: 386      accgaagaatggaagaagaaatgcaatgacaacagttgatgccacaaggctcgtcctcag 445
                |||||| ||||| | |||||| ||||||   || |||||||| ||||||   ||||||||
Sbjct: 33531971 accgaaaaatggcataagaaacgcaatgcacacggttgatgcaacaagggcagtcctcag 33532030

                          
Query: 446      tataatagag 455
                ||||||||||
Sbjct: 33532031 tataatagag 33532040



 Score = 40.1 bits (20), Expect = 6.2
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                                
Query: 309      atcttcaagaagcacaaggcgggcattatgac 340
                ||||||||||||||||  || |||||||||||
Sbjct: 33531064 atcttcaagaagcacagtgcaggcattatgac 33531095
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>dbj|AP005535.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OSJNBa0054K20
          Length = 153584

 Score = 48.1 bits (24), Expect = 0.025
 Identities = 36/40 (90%)
 Strand = Plus / Plus

                                                      
Query: 343    ccacaagtatactgagcagggatccaatcagagccatcac 382
              ||||||||||||| | ||| |||||||| |||||||||||
Sbjct: 106067 ccacaagtatactcaacagagatccaataagagccatcac 106106



 Score = 44.1 bits (22), Expect = 0.40
 Identities = 58/70 (82%)
 Strand = Plus / Plus

                                                                          
Query: 386    accgaagaatggaagaagaaatgcaatgacaacagttgatgccacaaggctcgtcctcag 445
              |||||| ||||| | |||||| ||||||   || |||||||| ||||||   ||||||||
Sbjct: 106846 accgaaaaatggcataagaaacgcaatgcacacggttgatgcaacaagggcagtcctcag 106905

                        
Query: 446    tataatagag 455
              ||||||||||
Sbjct: 106906 tataatagag 106915



 Score = 40.1 bits (20), Expect = 6.2
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                              
Query: 309    atcttcaagaagcacaaggcgggcattatgac 340
              ||||||||||||||||  || |||||||||||
Sbjct: 105939 atcttcaagaagcacagtgcaggcattatgac 105970
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>dbj|AP003984.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
            clone:OJ1046_F07
          Length = 114184

 Score = 48.1 bits (24), Expect = 0.025
 Identities = 36/40 (90%)
 Strand = Plus / Plus

                                                    
Query: 343  ccacaagtatactgagcagggatccaatcagagccatcac 382
            ||||||||||||| | ||| |||||||| |||||||||||
Sbjct: 1863 ccacaagtatactcaacagagatccaataagagccatcac 1902



 Score = 44.1 bits (22), Expect = 0.40
 Identities = 58/70 (82%)
 Strand = Plus / Plus

                                                                        
Query: 386  accgaagaatggaagaagaaatgcaatgacaacagttgatgccacaaggctcgtcctcag 445
            |||||| ||||| | |||||| ||||||   || |||||||| ||||||   ||||||||
Sbjct: 2642 accgaaaaatggcataagaaacgcaatgcacacggttgatgcaacaagggcagtcctcag 2701

                      
Query: 446  tataatagag 455
            ||||||||||
Sbjct: 2702 tataatagag 2711



 Score = 40.1 bits (20), Expect = 6.2
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                            
Query: 309  atcttcaagaagcacaaggcgggcattatgac 340
            ||||||||||||||||  || |||||||||||
Sbjct: 1735 atcttcaagaagcacagtgcaggcattatgac 1766
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>ref|NM_129684.2| Arabidopsis thaliana amino acid permease AT2G41190 mRNA, complete cds
          Length = 2155

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 54/65 (83%)
 Strand = Plus / Minus

                                                                        
Query: 317  gaagcacaaggcgggcattatgacagccacaagtatactgagcagggatccaatcagagc 376
            |||||| || || |||||||| |  ||||| ||||||||||| || ||||| || |||||
Sbjct: 1741 gaagcataaagctggcattattattgccactagtatactgagaagagatcctataagagc 1682

                 
Query: 377  catca 381
            |||||
Sbjct: 1681 catca 1677
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>gb|AF487277.1| Lecanicillium muscarium, complete genome
          Length = 24499

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 367   caatcagagccatcaccaaac 387
             |||||||||||||||||||||
Sbjct: 20118 caatcagagccatcaccaaac 20098
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>ref|XM_816496.1| Trypanosoma cruzi strain CL Brener hypothetical protein
           (Tc00.1047053506925.450) partial mRNA
          Length = 2046

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 289 gtgtggctttattctgtgcgatctt 313
           |||||| ||||||||||||||||||
Sbjct: 155 gtgtggttttattctgtgcgatctt 179
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>gb|BT000792.1| Arabidopsis thaliana clone RAFL05-20-J01 (R10342) unknown protein
            (At2g41190) mRNA, partial cds
          Length = 1329

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 54/65 (83%)
 Strand = Plus / Minus

                                                                        
Query: 317  gaagcacaaggcgggcattatgacagccacaagtatactgagcagggatccaatcagagc 376
            |||||| || || |||||||| |  ||||| ||||||||||| || ||||| || |||||
Sbjct: 1094 gaagcataaagctggcattattattgccactagtatactgagaagagatcctataagagc 1035

                 
Query: 377  catca 381
            |||||
Sbjct: 1034 catca 1030
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>gb|AY079364.1| Arabidopsis thaliana unknown protein (At2g41190) mRNA, complete cds
          Length = 1642

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 54/65 (83%)
 Strand = Plus / Minus

                                                                        
Query: 317  gaagcacaaggcgggcattatgacagccacaagtatactgagcagggatccaatcagagc 376
            |||||| || || |||||||| |  ||||| ||||||||||| || ||||| || |||||
Sbjct: 1479 gaagcataaagctggcattattattgccactagtatactgagaagagatcctataagagc 1420

                 
Query: 377  catca 381
            |||||
Sbjct: 1419 catca 1415
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>gb|AY039978.1| Arabidopsis thaliana unknown protein (At2g41190) mRNA, complete cds
          Length = 2030

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 54/65 (83%)
 Strand = Plus / Minus

                                                                        
Query: 317  gaagcacaaggcgggcattatgacagccacaagtatactgagcagggatccaatcagagc 376
            |||||| || || |||||||| |  ||||| ||||||||||| || ||||| || |||||
Sbjct: 1741 gaagcataaagctggcattattattgccactagtatactgagaagagatcctataagagc 1682

                 
Query: 377  catca 381
            |||||
Sbjct: 1681 catca 1677
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>emb|X55026.1|MTPACG Podospora anserina complete mitochondrial genome
          Length = 100314

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 367   caatcagagccatcaccaaac 387
             |||||||||||||||||||||
Sbjct: 15747 caatcagagccatcaccaaac 15727
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>gb|AY945289.1| Fusarium oxysporum strain F11 mitochondrion, complete genome
          Length = 34477

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 367   caatcagagccatcaccaaac 387
             |||||||||||||||||||||
Sbjct: 28217 caatcagagccatcaccaaac 28197
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>emb|X13337.1|MINCND2D Neurospora crassa mitochondrial DNA with duplications of tRNA-Met,
            tRNA-Cys and ND2 fragments (NADH dehydrogenase complex
            subunit)
          Length = 3884

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 367  caatcagagccatcaccaaac 387
            |||||||||||||||||||||
Sbjct: 3390 caatcagagccatcaccaaac 3370
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>gb|AF447590.1| Hypocrea jecorina mitochondrion, complete genome
          Length = 42130

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 367  caatcagagccatcaccaaac 387
            |||||||||||||||||||||
Sbjct: 4820 caatcagagccatcaccaaac 4800
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>gb|AY548158.1| Neurospora intermedia isolate M1991-60 tRNA-Met gene, partial
            sequence; UrfLM gene, complete cds; tRNA-Cys gene,
            complete sequence; disrupted small subunit ribosomal RNA
            gene, partial sequence; and integrated plasmid pMADDUR1
            reverse transcriptase gene, partial cds; mitochondrial
          Length = 6030

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 367  caatcagagccatcaccaaac 387
            |||||||||||||||||||||
Sbjct: 3375 caatcagagccatcaccaaac 3355
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>emb|Z34001.1|NCMT19SRR N.crassa (74-OR23-1A (FGSC #2489)) mitochondrial gene for 19S
           ribosomal RNA and transfer RNA-Tyr
          Length = 2071

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 367 caatcagagccatcaccaaac 387
           |||||||||||||||||||||
Sbjct: 76  caatcagagccatcaccaaac 56
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>gb|AY874423.1| Fusarium oxysporum voucher VPRI 19292 mitochondrion, partial genome
          Length = 33396

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 367   caatcagagccatcaccaaac 387
             |||||||||||||||||||||
Sbjct: 21885 caatcagagccatcaccaaac 21865
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>gb|AF029891.1|AF029891 Cryphonectria parasitica small subunit ribosomal RNA gene, complete
            sequence; including introns with putative maturase
            (mtSrRNA I1), (mtSrRNA I2), (mtSrRNA I3), and (mtSrRNA
            I4) genes, complete cds, mitochondrial genes for
            mitochondrial products
          Length = 11565

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 367  caatcagagccatcaccaaac 387
            |||||||||||||||||||||
Sbjct: 1551 caatcagagccatcaccaaac 1531
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>emb|X14734.1|MIPASMRR Podospora anserina mtDNA for small subunit rRNA
          Length = 3981

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 367 caatcagagccatcaccaaac 387
           |||||||||||||||||||||
Sbjct: 612 caatcagagccatcaccaaac 592
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>emb|Z69896.1|MTPCSSURR P.curvicolla mitochondrial small subunit rRNA gene (partial)
          Length = 249

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 367 caatcagagccatcaccaaac 387
           |||||||||||||||||||||
Sbjct: 172 caatcagagccatcaccaaac 152
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>gb|L33367.1|NEU19RRTR Neurospora crassa (clone p19StyrB1) mitochondrial 19S ribosomal RNA
           gene and transfer RNA-Tyr gene, complete
          Length = 2071

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 367 caatcagagccatcaccaaac 387
           |||||||||||||||||||||
Sbjct: 76  caatcagagccatcaccaaac 56
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>gb|J05254.1|NEUMTRG N.crassa mitochondrial small (19S) rRNA and Cys-tRNA
          Length = 2146

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 367  caatcagagccatcaccaaac 387
            |||||||||||||||||||||
Sbjct: 1343 caatcagagccatcaccaaac 1323
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>gb|AC119932.7| Mus musculus chromosome 15, clone RP24-260C11, complete sequence
          Length = 170117

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 368  aatcagagccatcaccaaac 387
            ||||||||||||||||||||
Sbjct: 8884 aatcagagccatcaccaaac 8865
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>ref|NM_175526.1| Mus musculus C-type lectin domain family 1, member a (Clec1a), mRNA
          Length = 3084

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 389  gaagaatggaagaagaaatg 408
            ||||||||||||||||||||
Sbjct: 1493 gaagaatggaagaagaaatg 1512
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>gb|AC140313.2| Mus musculus BAC clone RP24-324C6 from chromosome 15, complete sequence
          Length = 215861

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 368   aatcagagccatcaccaaac 387
             ||||||||||||||||||||
Sbjct: 37388 aatcagagccatcaccaaac 37407
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>gb|AC098734.3| Mus musculus BAC clone RP23-121L4 from 14, complete sequence
          Length = 196797

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 387    ccgaagaatggaagaagaaa 406
              ||||||||||||||||||||
Sbjct: 183092 ccgaagaatggaagaagaaa 183111
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>gb|AC114559.8| Mus musculus, clone RP23-50G21, complete sequence
          Length = 173404

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 387   ccgaagaatggaagaagaaa 406
             ||||||||||||||||||||
Sbjct: 89326 ccgaagaatggaagaagaaa 89345
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>gb|AC161602.4| Mus musculus BAC clone RP23-336I5 from chromosome 6, complete sequence
          Length = 224158

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 389    gaagaatggaagaagaaatg 408
              ||||||||||||||||||||
Sbjct: 165505 gaagaatggaagaagaaatg 165524
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>gb|AE014173.1| Mus musculus piebald deletion region section 1 of 11 of the complete
              sequence
          Length = 400029

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 387    ccgaagaatggaagaagaaa 406
              ||||||||||||||||||||
Sbjct: 275960 ccgaagaatggaagaagaaa 275941
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>gb|AC080021.3| Genomic sequence for Mus musculus, clone RP23-422L7, complete sequence
          Length = 200065

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 387    ccgaagaatggaagaagaaa 406
              ||||||||||||||||||||
Sbjct: 185546 ccgaagaatggaagaagaaa 185527
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>dbj|AK031121.1| Mus musculus 13 days embryo forelimb cDNA, RIKEN full-length enriched
            library, clone:5930406N14 product:weakly similar to
            C-TYPE LECTIN-LIKE RECEPTOR-1 [Homo sapiens], full insert
            sequence
          Length = 3084

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 389  gaagaatggaagaagaaatg 408
            ||||||||||||||||||||
Sbjct: 1493 gaagaatggaagaagaaatg 1512
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>dbj|AK036846.1| Mus musculus adult female vagina cDNA, RIKEN full-length enriched
            library, clone:9930017N20 product:weakly similar to
            C-TYPE LECTIN-LIKE RECEPTOR-1 [Homo sapiens], full insert
            sequence
          Length = 4988

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 389  gaagaatggaagaagaaatg 408
            ||||||||||||||||||||
Sbjct: 1477 gaagaatggaagaagaaatg 1496
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>gb|AC009496.3| Homo sapiens BAC clone RP11-500G18 from 2, complete sequence
          Length = 96843

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 201   attatgctggccacagagga 220
             ||||||||||||||||||||
Sbjct: 46866 attatgctggccacagagga 46847
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>dbj|BA000001.2| Pyrococcus horikoshii OT3 DNA, complete genome
          Length = 1738505

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 389    gaagaatggaagaagaaatg 408
              ||||||||||||||||||||
Sbjct: 143314 gaagaatggaagaagaaatg 143333
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>gb|AC138620.4| Mus musculus BAC clone RP23-250E1 from 6, complete sequence
          Length = 209846

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 389    gaagaatggaagaagaaatg 408
              ||||||||||||||||||||
Sbjct: 159037 gaagaatggaagaagaaatg 159018


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,328,755
Number of Sequences: 3902068
Number of extensions: 3328755
Number of successful extensions: 58329
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 58239
Number of HSP's gapped (non-prelim): 89
length of query: 460
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 438
effective length of database: 17,147,199,772
effective search space: 7510473500136
effective search space used: 7510473500136
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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