ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags24n12
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|AJ345035.1|HVU345035 Hordeum vulgare partial mRNA for monode... 1068 0.0
2gb|BT009417.1| Triticum aestivum clone wlmk1.pk0007.f9:fis, full... 593 e-166
3gb|AY106646.1| Zea mays PCO091252 mRNA sequence 70 9e-09
4ref|XM_467388.1| Oryza sativa (japonica cultivar-group), mRNA 60 9e-06
5gb|AF480496.1| Oryza sativa clone BAC 49D11, complete sequence 60 9e-06
6dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 60 9e-06
7dbj|AP005844.3| Oryza sativa (japonica cultivar-group) genomic D... 60 9e-06
8dbj|AP005323.3| Oryza sativa (japonica cultivar-group) genomic D... 60 9e-06
9dbj|AK065585.1| Oryza sativa (japonica cultivar-group) cDNA clon... 60 9e-06
10dbj|AK062096.1| Oryza sativa (japonica cultivar-group) cDNA clon... 60 9e-06
11ref|XM_467387.1| Oryza sativa (japonica cultivar-group), mRNA 58 3e-05
12gb|DQ411856.1| Lactobacillus casei ATCC 334 hypothetical protein... 42 2.0
13gb|AC113372.2| Homo sapiens chromosome 5 clone RP11-160H11, comp... 42 2.0
14gb|AC011384.4| Homo sapiens chromosome 5 clone CTB-143D11, compl... 42 2.0
15gb|AC123953.4| Mus musculus chromosome UL clone RP23-234O13, com... 42 2.0
16gb|AC093339.17| Mus musculus chromosome 19, clone RP23-5G6, comp... 40 8.1
17gb|AY621509.1| Oikopleura dioica envDll2-01 (envDll2-01), envDll... 40 8.1
18gb|AC153624.20| Mus musculus 6 BAC RP23-117P3 (Roswell Park Canc... 40 8.1
19emb|AL162581.11| Human DNA sequence from clone RP1-132F22 on chr... 40 8.1
20gb|AC144535.4| Homo sapiens 12 BAC RP11-191K23 (Roswell Park Can... 40 8.1
21gb|AC007834.40| Homo sapiens 12 BAC RP11-7G5 (Roswell Park Cance... 40 8.1
22gb|AC068943.4| Homo sapiens BAC clone RP11-769M2 from 2, complet... 40 8.1
23gb|AC155320.2| Pan troglodytes BAC clone CH251-421K1 from chromo... 40 8.1
24gb|AC005297.1| Homo sapiens X BAC GS1-466O4 (Roswell Park Cancer... 40 8.1
25gb|AC009161.14| Homo sapiens chromosome 16 clone RP11-75D3, comp... 40 8.1
26gb|AC175497.2| Pan troglodytes BAC clone CH251-951E13 from chrom... 40 8.1
27dbj|AK174018.1| Ciona intestinalis cDNA, clone:ciad018d09, full ... 40 8.1
28gb|AC114578.14| Mus musculus chromosome 19, clone RP23-162C4, co... 40 8.1
29dbj|AK116986.1| Ciona intestinalis cDNA, clone:cits012m05, full ... 40 8.1 
>emb|AJ345035.1|HVU345035 Hordeum vulgare partial mRNA for monodehydroascorbate reductase
          Length = 1250

 Score = 1068 bits (539), Expect = 0.0
 Identities = 578/587 (98%), Gaps = 3/587 (0%)
 Strand = Plus / Minus

                                                                        
Query: 8    aacaatatattatgagatttctatacttgtttacacatgaggcaacgattacactttcgt 67
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1232 aacaatatattatgagatttctatacttgtttacacatgaggcaacgattacactttcgt 1173

                                                                        
Query: 68   acaggtttgtacagggtttcctccaagtaactgtatgtaaacaatagatcttcctccttc 127
            |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1172 acaggtttatacagggtttcctccaagtaactgtatgtaaacaatagatcttcctccttc 1113

                                                                        
Query: 128  cttccagcagtttatcccagccgcccgcaaaccgatcccgggtttcaccacctgcggcgc 187
            |||||| ||||||||||||||||||||| ||||| ||| |||||||||||||||||||||
Sbjct: 1112 cttccatcagtttatcccagccgcccgcgaaccgttccggggtttcaccacctgcggcgc 1053

                                                                        
Query: 188  ttcctgccgtaccaataaccgaacgcggagatcgacactgccgcaacgacccctgccgtt 247
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1052 ttcctgccgtaccaataaccgaacgcggagatcgacactgccgcaacgacccctgccgtt 993

                                                                        
Query: 248  gcataccatacgaaggtgggcttttcgccgagggtaaccccgctgtcaggcacctctttc 307
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 992  gcataccatacgaaggtgggcttttcgccgagggtaaccccgctgtcaggcacctctttc 933

                                                                        
Query: 308  ttgctttcctggatggcaaacgctaggccttgtctttcaagttcagacatgtccgaggcc 367
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 932  ttgctttcctggatggcaaacgctaggccttgtctttcaagttcagacatgtccgaggcc 873

                                                                        
Query: 368  ttggttttacgccggacaaccaccgacaatgcctcgtagtcgtcccggttcccaccttcc 427
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 872  ttggttttacgccggacaaccaccgacaatgcctcgtagtcgtcccggttcccaccttcc 813

                                                                        
Query: 428  aggaacgcgcccgtgatctggcccttactgacccagtatgcgccgaacctcgggctgttg 487
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 812  aggaacgcgcccgtgatctggcccttactgacccagtatgcgccgaacctcgggctgttg 753

                                                                        
Query: 488  cttgtgaagtcgccgtagtgaattacttcttccgacattgtcccccgtagaactgccagg 547
            ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct: 752  cttgtgaagtcgccgtagtgaattacttc-tccgacattgt-ccccgtagaactgccagg 695

                                                           
Query: 548  acagtgtgaagactcttgagtagaagaatggcaaggtaatcgacgtc 594
            |||||||||||||||||||||||||||||||  ||||||||||||||
Sbjct: 694  acagtgtgaagactcttgagtagaagaatgg-taggtaatcgacgtc 649
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>gb|BT009417.1| Triticum aestivum clone wlmk1.pk0007.f9:fis, full insert mRNA
            sequence
          Length = 1821

 Score =  593 bits (299), Expect = e-166
 Identities = 395/423 (93%), Gaps = 3/423 (0%)
 Strand = Plus / Minus

                                                                        
Query: 172  tcaccacctgcggcgcttcctgccgtaccaataaccgaacgcggagatcgacactgccgc 231
            ||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct: 1583 tcaccacctgcggcgcttcctgccgtaccaataaccgaacgcggagatcgagacggccgc 1524

                                                                        
Query: 232  aacgacccctgccgttgcataccatacgaaggtgggcttttcgccgagggtaaccccgct 291
            ||| ||||| ||||| || ||||| |||||||||||||| ||||||||||| ||||||||
Sbjct: 1523 aacaacccccgccgtcgcgtaccacacgaaggtgggcttctcgccgagggtgaccccgct 1464

                                                                        
Query: 292  gtcaggcacctctttcttgctttcctggatggcaaacgctaggccttgtctttcaagttc 351
            ||||||||| |||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct: 1463 gtcaggcacgtctttcttgctttcctggatggcaaatgccaggccttgtctttcaagttc 1404

                                                                        
Query: 352  agacatgtccgaggccttggttttacgccggacaaccaccgacaatgcctcgtagtcgtc 411
            ||||||||||||| ||||||||||||||| |||||||||||| || ||||||||||||||
Sbjct: 1403 agacatgtccgagaccttggttttacgccagacaaccaccgataacgcctcgtagtcgtc 1344

                                                                        
Query: 412  ccggttcccaccttccaggaacgcgcccgtgatctggcccttactgacccagtatgcgcc 471
            ||||| ||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 1343 ccggtccccgccttccaggaacgcgcccgtgatctggcccttgctgacccagtatgcgcc 1284

                                                                        
Query: 472  gaacctcgggctgttgcttgtgaagtcgccgtagtgaattacttcttccgacattgtccc 531
            |||||  ||||||||||| |||||||||||||||||||||||||| ||||||||||| | 
Sbjct: 1283 gaaccgagggctgttgctcgtgaagtcgccgtagtgaattacttc-tccgacattgt-ct 1226

                                                                        
Query: 532  ccgtagaactgccaggacagtgtgaagactcttgagtagaagaatggcaaggtaatcgac 591
            || ||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||
Sbjct: 1225 ccatagaactgccaggacagtgtgaagactctggagtagaagaatggc-aggtaatcgac 1167

               
Query: 592  gtc 594
            |||
Sbjct: 1166 gtc 1164



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 66/76 (86%), Gaps = 2/76 (2%)
 Strand = Plus / Minus

                                                                        
Query: 1    ttcgttgaacaatatattatgagatttctatacttgtttaca-catgaggcaacgattac 59
            |||||| |||||||||| |||   ||||||||||||||||||  ||||| |||  |||||
Sbjct: 1715 ttcgtttaacaatatatgatggtgtttctatacttgtttacagtatgagacaa-aattac 1657

                            
Query: 60   actttcgtacaggttt 75
            ||||||||||||||||
Sbjct: 1656 actttcgtacaggttt 1641
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>gb|AY106646.1| Zea mays PCO091252 mRNA sequence
          Length = 1867

 Score = 69.9 bits (35), Expect = 9e-09
 Identities = 113/135 (83%), Gaps = 3/135 (2%)
 Strand = Plus / Minus

                                                                        
Query: 456  tgacccagtatgcgccgaacctcgggctgttgcttgtgaagtcgccgtagtgaattactt 515
            ||||||| ||||| ||||||||||| ||| ||||||||||||| ||  |||| |  ||||
Sbjct: 1273 tgacccaatatgcaccgaacctcggactgctgcttgtgaagtctccaaagtggaccactt 1214

                                                                        
Query: 516  cttccgacattgtcccccgtagaactgccaggacagtgtgaagactcttgagtagaagaa 575
            |  |||||||| | |||| ||||| ||||||||||  ||||| ||||| |||||||||||
Sbjct: 1213 c-cccgacattat-ccccatagaattgccaggacaacgtgaacactctggagtagaagaa 1156

                           
Query: 576  tggcaaggtaatcga 590
             ||| ||||||||||
Sbjct: 1155 cggc-aggtaatcga 1142



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 32/33 (96%)
 Strand = Plus / Minus

                                             
Query: 172  tcaccacctgcggcgcttcctgccgtaccaata 204
            |||||||||||||||||||||||| ||||||||
Sbjct: 1557 tcaccacctgcggcgcttcctgccataccaata 1525
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>ref|XM_467388.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1822

 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 36/38 (94%)
 Strand = Plus / Minus

                                                  
Query: 170  tttcaccacctgcggcgcttcctgccgtaccaataacc 207
            ||||||||||| ||||| ||||||||||||||||||||
Sbjct: 1609 tttcaccacctacggcgtttcctgccgtaccaataacc 1572



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 50/56 (89%), Gaps = 1/56 (1%)
 Strand = Plus / Minus

                                                                    
Query: 535  tagaactgccaggacagtgtgaagactcttgagtagaagaatggcaaggtaatcga 590
            ||||| |||||||| | ||||||||| || ||||||||||||||| ||||||||||
Sbjct: 1246 tagaattgccaggataatgtgaagaccctggagtagaagaatggc-aggtaatcga 1192
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>gb|AF480496.1| Oryza sativa clone BAC 49D11, complete sequence
          Length = 158050

 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 36/38 (94%)
 Strand = Plus / Minus

                                                    
Query: 170    tttcaccacctgcggcgcttcctgccgtaccaataacc 207
              ||||||||||| ||||| ||||||||||||||||||||
Sbjct: 113958 tttcaccacctacggcgtttcctgccgtaccaataacc 113921



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 44/49 (89%)
 Strand = Plus / Minus

                                                               
Query: 532    ccgtagaactgccaggacagtgtgaagactcttgagtagaagaatggca 580
              |||||||||||||| ||||| | |||||| || ||||||||||||||||
Sbjct: 116960 ccgtagaactgccacgacagcgagaagaccctggagtagaagaatggca 116912



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 50/56 (89%), Gaps = 1/56 (1%)
 Strand = Plus / Minus

                                                                      
Query: 535    tagaactgccaggacagtgtgaagactcttgagtagaagaatggcaaggtaatcga 590
              ||||| |||||||| | ||||||||| || ||||||||||||||| ||||||||||
Sbjct: 113595 tagaattgccaggataatgtgaagaccctggagtagaagaatggc-aggtaatcga 113541
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 36/38 (94%)
 Strand = Plus / Plus

                                                      
Query: 170      tttcaccacctgcggcgcttcctgccgtaccaataacc 207
                ||||||||||| ||||| ||||||||||||||||||||
Sbjct: 29248673 tttcaccacctacggcgtttcctgccgtaccaataacc 29248710



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 44/49 (89%)
 Strand = Plus / Plus

                                                                 
Query: 532      ccgtagaactgccaggacagtgtgaagactcttgagtagaagaatggca 580
                |||||||||||||| ||||| | |||||| || ||||||||||||||||
Sbjct: 29245671 ccgtagaactgccacgacagcgagaagaccctggagtagaagaatggca 29245719



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 50/56 (89%), Gaps = 1/56 (1%)
 Strand = Plus / Plus

                                                                        
Query: 535      tagaactgccaggacagtgtgaagactcttgagtagaagaatggcaaggtaatcga 590
                ||||| |||||||| | ||||||||| || ||||||||||||||| ||||||||||
Sbjct: 29249036 tagaattgccaggataatgtgaagaccctggagtagaagaatggc-aggtaatcga 29249090
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>dbj|AP005844.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OSJNBb0060O16
          Length = 164373

 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 36/38 (94%)
 Strand = Plus / Plus

                                                   
Query: 170   tttcaccacctgcggcgcttcctgccgtaccaataacc 207
             ||||||||||| ||||| ||||||||||||||||||||
Sbjct: 46018 tttcaccacctacggcgtttcctgccgtaccaataacc 46055



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 44/49 (89%)
 Strand = Plus / Plus

                                                              
Query: 532   ccgtagaactgccaggacagtgtgaagactcttgagtagaagaatggca 580
             |||||||||||||| ||||| | |||||| || ||||||||||||||||
Sbjct: 43016 ccgtagaactgccacgacagcgagaagaccctggagtagaagaatggca 43064



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 50/56 (89%), Gaps = 1/56 (1%)
 Strand = Plus / Plus

                                                                     
Query: 535   tagaactgccaggacagtgtgaagactcttgagtagaagaatggcaaggtaatcga 590
             ||||| |||||||| | ||||||||| || ||||||||||||||| ||||||||||
Sbjct: 46381 tagaattgccaggataatgtgaagaccctggagtagaagaatggc-aggtaatcga 46435
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>dbj|AP005323.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0680A05
          Length = 168092

 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 36/38 (94%)
 Strand = Plus / Plus

                                                    
Query: 170    tttcaccacctgcggcgcttcctgccgtaccaataacc 207
              ||||||||||| ||||| ||||||||||||||||||||
Sbjct: 138641 tttcaccacctacggcgtttcctgccgtaccaataacc 138678



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 44/49 (89%)
 Strand = Plus / Plus

                                                               
Query: 532    ccgtagaactgccaggacagtgtgaagactcttgagtagaagaatggca 580
              |||||||||||||| ||||| | |||||| || ||||||||||||||||
Sbjct: 135639 ccgtagaactgccacgacagcgagaagaccctggagtagaagaatggca 135687



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 50/56 (89%), Gaps = 1/56 (1%)
 Strand = Plus / Plus

                                                                      
Query: 535    tagaactgccaggacagtgtgaagactcttgagtagaagaatggcaaggtaatcga 590
              ||||| |||||||| | ||||||||| || ||||||||||||||| ||||||||||
Sbjct: 139004 tagaattgccaggataatgtgaagaccctggagtagaagaatggc-aggtaatcga 139058
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>dbj|AK065585.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013034M23, full
            insert sequence
          Length = 1821

 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 36/38 (94%)
 Strand = Plus / Minus

                                                  
Query: 170  tttcaccacctgcggcgcttcctgccgtaccaataacc 207
            ||||||||||| ||||| ||||||||||||||||||||
Sbjct: 1608 tttcaccacctacggcgtttcctgccgtaccaataacc 1571



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 50/56 (89%), Gaps = 1/56 (1%)
 Strand = Plus / Minus

                                                                    
Query: 535  tagaactgccaggacagtgtgaagactcttgagtagaagaatggcaaggtaatcga 590
            ||||| |||||||| | ||||||||| || ||||||||||||||| ||||||||||
Sbjct: 1245 tagaattgccaggataatgtgaagaccctggagtagaagaatggc-aggtaatcga 1191
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>dbj|AK062096.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-044-H12, full
            insert sequence
          Length = 1246

 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 36/38 (94%)
 Strand = Plus / Minus

                                                  
Query: 170  tttcaccacctgcggcgcttcctgccgtaccaataacc 207
            ||||||||||| ||||| ||||||||||||||||||||
Sbjct: 1051 tttcaccacctacggcgtttcctgccgtaccaataacc 1014



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 50/56 (89%), Gaps = 1/56 (1%)
 Strand = Plus / Minus

                                                                   
Query: 535 tagaactgccaggacagtgtgaagactcttgagtagaagaatggcaaggtaatcga 590
           ||||| |||||||| | ||||||||| || ||||||||||||||| ||||||||||
Sbjct: 688 tagaattgccaggataatgtgaagaccctggagtagaagaatggc-aggtaatcga 634
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>ref|XM_467387.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1440

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 44/49 (89%)
 Strand = Plus / Minus

                                                             
Query: 532  ccgtagaactgccaggacagtgtgaagactcttgagtagaagaatggca 580
            |||||||||||||| ||||| | |||||| || ||||||||||||||||
Sbjct: 1076 ccgtagaactgccacgacagcgagaagaccctggagtagaagaatggca 1028
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>gb|DQ411856.1| Lactobacillus casei ATCC 334 hypothetical protein (Lcas001), putative
             transposase (Lcas002), and putative transposase (Lcas003)
             genes, complete cds; and Lactobacillus casei phage Lca1,
             complete sequence
          Length = 52470

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 484   gttgcttgtgaagtcgccgta 504
             |||||||||||||||||||||
Sbjct: 10947 gttgcttgtgaagtcgccgta 10967
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>gb|AC113372.2| Homo sapiens chromosome 5 clone RP11-160H11, complete sequence
          Length = 98328

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 96    aactgtatgtaaacaatagat 116
             |||||||||||||||||||||
Sbjct: 76165 aactgtatgtaaacaatagat 76145
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>gb|AC011384.4| Homo sapiens chromosome 5 clone CTB-143D11, complete sequence
          Length = 104475

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 96    aactgtatgtaaacaatagat 116
             |||||||||||||||||||||
Sbjct: 28447 aactgtatgtaaacaatagat 28427
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>gb|AC123953.4| Mus musculus chromosome UL clone RP23-234O13, complete sequence
          Length = 194728

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 8     aacaatatattatgagatttctata 32
             ||||||||||| |||||||||||||
Sbjct: 61079 aacaatatattttgagatttctata 61103
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>gb|AC093339.17| Mus musculus chromosome 19, clone RP23-5G6, complete sequence
          Length = 218747

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 116   tcttcctccttccttccagc 135
             ||||||||||||||||||||
Sbjct: 16071 tcttcctccttccttccagc 16090
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>gb|AY621509.1| Oikopleura dioica envDll2-01 (envDll2-01), envDll2-02 (envDll2-02),
            envDll2-03 (envDll2-03), envDll2-04 (envDll2-04),
            envDll2-05 (envDll2-05), envDll2-06 (envDll2-06), and
            envDll2-07 (envDll2-07) genes, complete cds
          Length = 26938

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 303  ctttcttgctttcctggatg 322
            ||||||||||||||||||||
Sbjct: 5860 ctttcttgctttcctggatg 5841
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>gb|AC153624.20| Mus musculus 6 BAC RP23-117P3 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 224115

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 114    gatcttcctccttccttcca 133
              ||||||||||||||||||||
Sbjct: 115312 gatcttcctccttccttcca 115331
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>emb|AL162581.11| Human DNA sequence from clone RP1-132F22 on chromosome 6 Contains the
             5' part of the GSTA4 gene for glutathione S-transferase A4
             and the 3' part of the KIAA0936 gene for a MAK-related
             kinase, complete sequence
          Length = 33993

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 529   cccccgtagaactgccaggacagtgtga 556
             ||||| ||| ||||||||||||||||||
Sbjct: 21834 cccccatagtactgccaggacagtgtga 21861
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>gb|AC144535.4| Homo sapiens 12 BAC RP11-191K23 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 156422

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 111   atagatcttcctccttcctt 130
             ||||||||||||||||||||
Sbjct: 91398 atagatcttcctccttcctt 91379
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>gb|AC007834.40| Homo sapiens 12 BAC RP11-7G5 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 210578

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 125    ttccttccagcagtttatcc 144
              ||||||||||||||||||||
Sbjct: 169088 ttccttccagcagtttatcc 169107
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>gb|AC068943.4| Homo sapiens BAC clone RP11-769M2 from 2, complete sequence
          Length = 72719

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 9     acaatatattatgagatttc 28
             ||||||||||||||||||||
Sbjct: 12817 acaatatattatgagatttc 12836
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>gb|AC155320.2| Pan troglodytes BAC clone CH251-421K1 from chromosome unknown, complete
              sequence
          Length = 185966

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 26     ttctatacttgtttacacat 45
              ||||||||||||||||||||
Sbjct: 105485 ttctatacttgtttacacat 105504
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>gb|AC005297.1| Homo sapiens X BAC GS1-466O4 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 177503

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 113    agatcttcctccttccttcc 132
              ||||||||||||||||||||
Sbjct: 114459 agatcttcctccttccttcc 114440
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>gb|AC009161.14| Homo sapiens chromosome 16 clone RP11-75D3, complete sequence
          Length = 180222

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 26    ttctatacttgtttacacat 45
             ||||||||||||||||||||
Sbjct: 34689 ttctatacttgtttacacat 34708
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>gb|AC175497.2| Pan troglodytes BAC clone CH251-951E13 from chromosome y, complete
              sequence
          Length = 198653

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 21     gagatttctatacttgttta 40
              ||||||||||||||||||||
Sbjct: 184406 gagatttctatacttgttta 184425
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>dbj|AK174018.1| Ciona intestinalis cDNA, clone:ciad018d09, full insert sequence
          Length = 3083

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 248  gcataccatacgaaggtggg 267
            ||||||||||||||||||||
Sbjct: 1557 gcataccatacgaaggtggg 1538
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>gb|AC114578.14| Mus musculus chromosome 19, clone RP23-162C4, complete sequence
          Length = 201229

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 116   tcttcctccttccttccagc 135
             ||||||||||||||||||||
Sbjct: 14017 tcttcctccttccttccagc 13998
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>dbj|AK116986.1| Ciona intestinalis cDNA, clone:cits012m05, full insert sequence
          Length = 1634

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 248  gcataccatacgaaggtggg 267
            ||||||||||||||||||||
Sbjct: 1118 gcataccatacgaaggtggg 1137


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,084,835
Number of Sequences: 3902068
Number of extensions: 5084835
Number of successful extensions: 87707
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 87633
Number of HSP's gapped (non-prelim): 68
length of query: 594
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 571
effective length of database: 17,143,297,704
effective search space: 9788822988984
effective search space used: 9788822988984
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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