ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags24n09
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_186986.1| Oryza sativa (japonica cultivar-group), mRNA 170 2e-39
2dbj|AK104560.1| Oryza sativa (japonica cultivar-group) cDNA clon... 170 2e-39
3dbj|AK104725.1| Oryza sativa (japonica cultivar-group) cDNA clon... 170 2e-39
4dbj|AK065209.1| Oryza sativa (japonica cultivar-group) cDNA clon... 170 2e-39
5dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 113 4e-22
6dbj|AP004304.5| Oryza sativa (japonica cultivar-group) genomic D... 113 4e-22
7dbj|AP006267.3| Oryza sativa (japonica cultivar-group) genomic D... 113 4e-22
8ref|NM_186977.1| Oryza sativa (japonica cultivar-group), mRNA 68 2e-08
9gb|AC079233.4| Homo sapiens BAC clone RP11-372N22 from 4, comple... 46 0.069
10gb|AC152928.1| Tribolium castaneum BAC T.cast_C35H6 (Clemson Un... 42 1.1
11gb|AC159425.1| Trypanosoma brucei chromosome 3 clone RPCI93-27F1... 42 1.1
12gb|CP000066.1| Trypanosoma brucei chromosome 3, complete sequence 42 1.1
13ref|XM_819018.1| Trypanosoma brucei TREU927 clone RPCI93-27F10 d... 42 1.1
14gb|S75674.1| DNA helicase homolog, DNA-depenent RNA polymerase l... 42 1.1
15gb|AF303741.1|AF303741 Chilo iridescent virus complete genome 42 1.1
16emb|AL359239.4|CNS05TEQ Human chromosome 14 DNA sequence BAC R-4... 42 1.1
17emb|AL161753.4|CNS01RHI Human chromosome 14 DNA sequence BAC R-2... 42 1.1
18gb|AC164597.11| Mus musculus chromosome 15, clone RP23-108H23, c... 40 4.2
19gb|AC161352.7| Mus musculus chromosome 3, clone RP23-129N8, comp... 40 4.2
20ref|XM_642109.1| Dictyostelium discoideum hypothetical protein (... 40 4.2
21gb|AC133457.6| Mus musculus chromosome 3, clone RP24-493E2, comp... 40 4.2
22ref|XM_675445.1| Aspergillus nidulans FGSC A4 hypothetical prote... 40 4.2
23gb|AE014306.1| Homo sapiens chromosome 13q34 schizophrenia regio... 40 4.2
24gb|AC137119.7| Mus musculus chromosome 6, clone RP23-252K4, comp... 40 4.2
25emb|AL359761.7| Human DNA sequence from clone RP11-202O6 on chro... 40 4.2
26emb|AL160267.17| Human DNA sequence from clone RP11-117O7 on chr... 40 4.2
27emb|AJ276388.1|THA276388 Trichoderma harzianum proA gene for put... 40 4.2
28gb|AC010798.9| Homo sapiens, clone RP11-470B24, complete sequence 40 4.2
29gb|AC090989.8| Homo sapiens chromosome 18, clone RP11-265C19, co... 40 4.2
30gb|AC126614.8| Homo sapiens 12 BAC RP11-756H6 (Roswell Park Canc... 40 4.2
31gb|AC154007.6| Mus musculus 6 BAC RP24-484F15 (Roswell Park Canc... 40 4.2
32emb|BX855593.12| Zebrafish DNA sequence from clone DKEY-286J2 in... 40 4.2
33emb|CR854851.12| Zebrafish DNA sequence from clone DKEY-98D7 in ... 40 4.2 
>ref|NM_186986.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1083

 Score =  170 bits (86), Expect = 2e-39
 Identities = 142/161 (88%)
 Strand = Plus / Minus

                                                                        
Query: 150  tagttcacaaattctatttcgttgaatggctcccccgcatgaagcttgagggcaacatca 209
            |||||||||||||| | |||  ||| ||||||||| | ||||||||| ||||||||| ||
Sbjct: 1082 tagttcacaaattccacttcagtgattggctcccctgaatgaagcttcagggcaacacca 1023

                                                                        
Query: 210  ccaacaacctttgccatcgttctgtaagagtattccgtgattcctgcantgtgtggtgat 269
            |||||||||||||||||||| ||||||||||||||||||| ||| ||| | ||||| | |
Sbjct: 1022 ccaacaacctttgccatcgtcctgtaagagtattccgtgactccagcaatatgtggggtt 963

                                                     
Query: 270  ataataacatttggaaatttcagaattggatcctctggatc 310
            |||||||||||||  || |||||||||||||||||||||||
Sbjct: 962  ataataacatttgagaacttcagaattggatcctctggatc 922
to top
>dbj|AK104560.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-306-C01, full
            insert sequence
          Length = 1286

 Score =  170 bits (86), Expect = 2e-39
 Identities = 142/161 (88%)
 Strand = Plus / Minus

                                                                        
Query: 150  tagttcacaaattctatttcgttgaatggctcccccgcatgaagcttgagggcaacatca 209
            |||||||||||||| | |||  ||| ||||||||| | ||||||||| ||||||||| ||
Sbjct: 1124 tagttcacaaattccacttcagtgattggctcccctgaatgaagcttcagggcaacacca 1065

                                                                        
Query: 210  ccaacaacctttgccatcgttctgtaagagtattccgtgattcctgcantgtgtggtgat 269
            |||||||||||||||||||| ||||||||||||||||||| ||| ||| | ||||| | |
Sbjct: 1064 ccaacaacctttgccatcgtcctgtaagagtattccgtgactccagcaatatgtggggtt 1005

                                                     
Query: 270  ataataacatttggaaatttcagaattggatcctctggatc 310
            |||||||||||||  || |||||||||||||||||||||||
Sbjct: 1004 ataataacatttgagaacttcagaattggatcctctggatc 964
to top
>dbj|AK104725.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-038-B08, full
            insert sequence
          Length = 1286

 Score =  170 bits (86), Expect = 2e-39
 Identities = 142/161 (88%)
 Strand = Plus / Minus

                                                                        
Query: 150  tagttcacaaattctatttcgttgaatggctcccccgcatgaagcttgagggcaacatca 209
            |||||||||||||| | |||  ||| ||||||||| | ||||||||| ||||||||| ||
Sbjct: 1124 tagttcacaaattccacttcagtgattggctcccctgaatgaagcttcagggcaacacca 1065

                                                                        
Query: 210  ccaacaacctttgccatcgttctgtaagagtattccgtgattcctgcantgtgtggtgat 269
            |||||||||||||||||||| ||||||||||||||||||| ||| ||| | ||||| | |
Sbjct: 1064 ccaacaacctttgccatcgtcctgtaagagtattccgtgactccagcaatatgtggggtt 1005

                                                     
Query: 270  ataataacatttggaaatttcagaattggatcctctggatc 310
            |||||||||||||  || |||||||||||||||||||||||
Sbjct: 1004 ataataacatttgagaacttcagaattggatcctctggatc 964
to top
>dbj|AK065209.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002F16, full
            insert sequence
          Length = 1304

 Score =  170 bits (86), Expect = 2e-39
 Identities = 142/161 (88%)
 Strand = Plus / Minus

                                                                        
Query: 150  tagttcacaaattctatttcgttgaatggctcccccgcatgaagcttgagggcaacatca 209
            |||||||||||||| | |||  ||| ||||||||| | ||||||||| ||||||||| ||
Sbjct: 1131 tagttcacaaattccacttcagtgattggctcccctgaatgaagcttcagggcaacacca 1072

                                                                        
Query: 210  ccaacaacctttgccatcgttctgtaagagtattccgtgattcctgcantgtgtggtgat 269
            |||||||||||||||||||| ||||||||||||||||||| ||| ||| | ||||| | |
Sbjct: 1071 ccaacaacctttgccatcgtcctgtaagagtattccgtgactccagcaatatgtggggtt 1012

                                                     
Query: 270  ataataacatttggaaatttcagaattggatcctctggatc 310
            |||||||||||||  || |||||||||||||||||||||||
Sbjct: 1011 ataataacatttgagaacttcagaattggatcctctggatc 971
to top
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score =  113 bits (57), Expect = 4e-22
 Identities = 86/96 (89%)
 Strand = Plus / Minus

                                                                           
Query: 215     aacctttgccatcgttctgtaagagtattccgtgattcctgcantgtgtggtgatataat 274
               ||||||||||||||| ||||||||||||||||||| ||| ||| | ||||| | ||||||
Sbjct: 9389147 aacctttgccatcgtcctgtaagagtattccgtgactccagcaatatgtggggttataat 9389088

                                                   
Query: 275     aacatttggaaatttcagaattggatcctctggatc 310
               ||||||||  || |||||||||||||||||||||||
Sbjct: 9389087 aacatttgagaacttcagaattggatcctctggatc 9389052



 Score = 77.8 bits (39), Expect = 2e-11
 Identities = 60/67 (89%)
 Strand = Plus / Minus

                                                                           
Query: 153     ttcacaaattctatttcgttgaatggctcccccgcatgaagcttgagggcaacatcacca 212
               ||||||||||||| |||  ||| | ||||||| | |||||||||||||||||||||||||
Sbjct: 9340749 ttcacaaattctacttctgtgatttgctcccctgaatgaagcttgagggcaacatcacca 9340690

                      
Query: 213     acaacct 219
               |||||||
Sbjct: 9340689 acaacct 9340683



 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 61/70 (87%)
 Strand = Plus / Minus

                                                                           
Query: 150     tagttcacaaattctatttcgttgaatggctcccccgcatgaagcttgagggcaacatca 209
               |||||||||||||| | |||  ||| ||||||||| | ||||||||| ||||||||| ||
Sbjct: 9389688 tagttcacaaattccacttcagtgattggctcccctgaatgaagcttcagggcaacacca 9389629

                         
Query: 210     ccaacaacct 219
               ||||||||||
Sbjct: 9389628 ccaacaacct 9389619



 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 46/50 (92%)
 Strand = Plus / Minus

                                                                 
Query: 261     tgtggtgatataataacatttggaaatttcagaattggatcctctggatc 310
               ||||||| ||||||||||||||  || |||||||||||||||||||||||
Sbjct: 9332525 tgtggtgttataataacatttgagaacttcagaattggatcctctggatc 9332476
to top
>dbj|AP004304.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
              clone:P0483E06
          Length = 159035

 Score =  113 bits (57), Expect = 4e-22
 Identities = 86/96 (89%)
 Strand = Plus / Minus

                                                                          
Query: 215    aacctttgccatcgttctgtaagagtattccgtgattcctgcantgtgtggtgatataat 274
              ||||||||||||||| ||||||||||||||||||| ||| ||| | ||||| | ||||||
Sbjct: 151991 aacctttgccatcgtcctgtaagagtattccgtgactccagcaatatgtggggttataat 151932

                                                  
Query: 275    aacatttggaaatttcagaattggatcctctggatc 310
              ||||||||  || |||||||||||||||||||||||
Sbjct: 151931 aacatttgagaacttcagaattggatcctctggatc 151896



 Score = 77.8 bits (39), Expect = 2e-11
 Identities = 60/67 (89%)
 Strand = Plus / Minus

                                                                          
Query: 153    ttcacaaattctatttcgttgaatggctcccccgcatgaagcttgagggcaacatcacca 212
              ||||||||||||| |||  ||| | ||||||| | |||||||||||||||||||||||||
Sbjct: 103593 ttcacaaattctacttctgtgatttgctcccctgaatgaagcttgagggcaacatcacca 103534

                     
Query: 213    acaacct 219
              |||||||
Sbjct: 103533 acaacct 103527



 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 61/70 (87%)
 Strand = Plus / Minus

                                                                          
Query: 150    tagttcacaaattctatttcgttgaatggctcccccgcatgaagcttgagggcaacatca 209
              |||||||||||||| | |||  ||| ||||||||| | ||||||||| ||||||||| ||
Sbjct: 152532 tagttcacaaattccacttcagtgattggctcccctgaatgaagcttcagggcaacacca 152473

                        
Query: 210    ccaacaacct 219
              ||||||||||
Sbjct: 152472 ccaacaacct 152463



 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 46/50 (92%)
 Strand = Plus / Minus

                                                               
Query: 261   tgtggtgatataataacatttggaaatttcagaattggatcctctggatc 310
             ||||||| ||||||||||||||  || |||||||||||||||||||||||
Sbjct: 95369 tgtggtgttataataacatttgagaacttcagaattggatcctctggatc 95320
to top
>dbj|AP006267.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OSJNBa0004F07
          Length = 135890

 Score =  113 bits (57), Expect = 4e-22
 Identities = 86/96 (89%)
 Strand = Plus / Minus

                                                                         
Query: 215   aacctttgccatcgttctgtaagagtattccgtgattcctgcantgtgtggtgatataat 274
             ||||||||||||||| ||||||||||||||||||| ||| ||| | ||||| | ||||||
Sbjct: 60015 aacctttgccatcgtcctgtaagagtattccgtgactccagcaatatgtggggttataat 59956

                                                 
Query: 275   aacatttggaaatttcagaattggatcctctggatc 310
             ||||||||  || |||||||||||||||||||||||
Sbjct: 59955 aacatttgagaacttcagaattggatcctctggatc 59920



 Score = 77.8 bits (39), Expect = 2e-11
 Identities = 60/67 (89%)
 Strand = Plus / Minus

                                                                         
Query: 153   ttcacaaattctatttcgttgaatggctcccccgcatgaagcttgagggcaacatcacca 212
             ||||||||||||| |||  ||| | ||||||| | |||||||||||||||||||||||||
Sbjct: 11617 ttcacaaattctacttctgtgatttgctcccctgaatgaagcttgagggcaacatcacca 11558

                    
Query: 213   acaacct 219
             |||||||
Sbjct: 11557 acaacct 11551



 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 61/70 (87%)
 Strand = Plus / Minus

                                                                         
Query: 150   tagttcacaaattctatttcgttgaatggctcccccgcatgaagcttgagggcaacatca 209
             |||||||||||||| | |||  ||| ||||||||| | ||||||||| ||||||||| ||
Sbjct: 60556 tagttcacaaattccacttcagtgattggctcccctgaatgaagcttcagggcaacacca 60497

                       
Query: 210   ccaacaacct 219
             ||||||||||
Sbjct: 60496 ccaacaacct 60487



 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 46/50 (92%)
 Strand = Plus / Minus

                                                              
Query: 261  tgtggtgatataataacatttggaaatttcagaattggatcctctggatc 310
            ||||||| ||||||||||||||  || |||||||||||||||||||||||
Sbjct: 3393 tgtggtgttataataacatttgagaacttcagaattggatcctctggatc 3344
to top
>ref|NM_186977.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 951

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 46/50 (92%)
 Strand = Plus / Minus

                                                             
Query: 261 tgtggtgatataataacatttggaaatttcagaattggatcctctggatc 310
           ||||||| ||||||||||||||  || |||||||||||||||||||||||
Sbjct: 887 tgtggtgttataataacatttgagaacttcagaattggatcctctggatc 838
to top
>gb|AC079233.4| Homo sapiens BAC clone RP11-372N22 from 4, complete sequence
          Length = 164183

 Score = 46.1 bits (23), Expect = 0.069
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 269    tataataacatttggaaatttca 291
              |||||||||||||||||||||||
Sbjct: 155048 tataataacatttggaaatttca 155070
to top
>gb|AC152928.1| Tribolium castaneum  BAC T.cast_C35H6 (Clemson University Genomics
            Institute Tribolium castaneum BAC Library (Red Flour
            Beetle)) complete sequence
          Length = 152382

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 107  gtattaaattaaatcaacaat 127
            |||||||||||||||||||||
Sbjct: 2509 gtattaaattaaatcaacaat 2489
to top
>gb|AC159425.1| Trypanosoma brucei chromosome 3 clone RPCI93-27F10, complete sequence
          Length = 135196

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 196   tgagggcaacatcaccaacaa 216
             |||||||||||||||||||||
Sbjct: 57122 tgagggcaacatcaccaacaa 57142
to top
>gb|CP000066.1| Trypanosoma brucei chromosome 3, complete sequence
          Length = 1653225

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 196    tgagggcaacatcaccaacaa 216
              |||||||||||||||||||||
Sbjct: 227755 tgagggcaacatcaccaacaa 227735
to top
>ref|XM_819018.1| Trypanosoma brucei TREU927 clone RPCI93-27F10 dynein heavy chain
             (Tb927.3.930) partial mRNA
          Length = 13920

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 196   tgagggcaacatcaccaacaa 216
             |||||||||||||||||||||
Sbjct: 10414 tgagggcaacatcaccaacaa 10394
to top
>gb|S75674.1| DNA helicase homolog, DNA-depenent RNA polymerase largest subunit
            homolog {fragment M} [Chilo iridescent virus CIV, insect
            iridescent virus type 6, Genomic, 3 genes, 7990 nt]
          Length = 7990

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 96   tctatttatacgtattaaattaaat 120
            ||||||||||||||||||| |||||
Sbjct: 7511 tctatttatacgtattaaagtaaat 7487
to top
>gb|AF303741.1|AF303741 Chilo iridescent virus complete genome
          Length = 212482

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 96    tctatttatacgtattaaattaaat 120
             ||||||||||||||||||| |||||
Sbjct: 75508 tctatttatacgtattaaagtaaat 75484
to top
>emb|AL359239.4|CNS05TEQ Human chromosome 14 DNA sequence BAC R-432I6 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 169985

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 277   catttggaaatttcagaattggatcctct 305
             ||||||||||||||||| |||||| ||||
Sbjct: 34486 catttggaaatttcagatttggattctct 34514
to top
>emb|AL161753.4|CNS01RHI Human chromosome 14 DNA sequence BAC R-26L16 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 164826

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 277   catttggaaatttcagaattggatcctct 305
             ||||||||||||||||| |||||| ||||
Sbjct: 20320 catttggaaatttcagatttggattctct 20292
to top
>gb|AC164597.11| Mus musculus chromosome 15, clone RP23-108H23, complete sequence
          Length = 190235

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 43     ttctccaataatgcaatcacccat 66
              ||||||||||||||||| ||||||
Sbjct: 111386 ttctccaataatgcaataacccat 111409
to top
>gb|AC161352.7| Mus musculus chromosome 3, clone RP23-129N8, complete sequence
          Length = 192165

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 272   aataacatttggaaatttca 291
             ||||||||||||||||||||
Sbjct: 57362 aataacatttggaaatttca 57343
to top
>ref|XM_642109.1| Dictyostelium discoideum hypothetical protein (DDB0189441), partial
            mRNA
          Length = 3042

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 108  tattaaattaaatcaacaat 127
            ||||||||||||||||||||
Sbjct: 2988 tattaaattaaatcaacaat 3007
to top
>gb|AC133457.6| Mus musculus chromosome 3, clone RP24-493E2, complete sequence
          Length = 169824

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 272    aataacatttggaaatttca 291
              ||||||||||||||||||||
Sbjct: 155914 aataacatttggaaatttca 155895
to top
>ref|XM_675445.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN7268.2), mRNA
          Length = 738

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 120 tcaacaatgccgccatctac 139
           ||||||||||||||||||||
Sbjct: 269 tcaacaatgccgccatctac 288
to top
>gb|AE014306.1| Homo sapiens chromosome 13q34 schizophrenia region contig 1 section 3
             of 11 of the complete sequence
          Length = 250029

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 40    tgattctccaataatgcaat 59
             ||||||||||||||||||||
Sbjct: 10376 tgattctccaataatgcaat 10357
to top
>gb|AC137119.7| Mus musculus chromosome 6, clone RP23-252K4, complete sequence
          Length = 226354

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 102   tatacgtattaaattaaatcaacaatgc 129
             ||||| |||||||||| |||||||||||
Sbjct: 13964 tatacatattaaattatatcaacaatgc 13937
to top
>emb|AL359761.7| Human DNA sequence from clone RP11-202O6 on chromosome 13q32.3-34,
             complete sequence
          Length = 86883

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 40    tgattctccaataatgcaat 59
             ||||||||||||||||||||
Sbjct: 17268 tgattctccaataatgcaat 17249
to top
>emb|AL160267.17| Human DNA sequence from clone RP11-117O7 on chromosome 9q21.11-21.33
             Contains a pseudogene similar to part of cytochrome c
             oxidase I (MTCO3) and a NADH dehydrogenase 2 (MTND2)
             pseudogene, complete sequence
          Length = 158315

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 52    aatgcaatcacccataacat 71
             ||||||||||||||||||||
Sbjct: 33271 aatgcaatcacccataacat 33290
to top
>emb|AJ276388.1|THA276388 Trichoderma harzianum proA gene for putative aspartate protease
          Length = 2926

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 194  cttgagggcaacatcaccaa 213
            ||||||||||||||||||||
Sbjct: 2166 cttgagggcaacatcaccaa 2147
to top
>gb|AC010798.9| Homo sapiens, clone RP11-470B24, complete sequence
          Length = 176148

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 274   taacatttggaaatttcaga 293
             ||||||||||||||||||||
Sbjct: 21659 taacatttggaaatttcaga 21640
to top
>gb|AC090989.8| Homo sapiens chromosome 18, clone RP11-265C19, complete sequence
          Length = 108799

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 274   taacatttggaaatttcaga 293
             ||||||||||||||||||||
Sbjct: 94223 taacatttggaaatttcaga 94204
to top
>gb|AC126614.8| Homo sapiens 12 BAC RP11-756H6 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 147545

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 16    ataaataaacctgttgaatt 35
             ||||||||||||||||||||
Sbjct: 58635 ataaataaacctgttgaatt 58654
to top
>gb|AC154007.6| Mus musculus 6 BAC RP24-484F15 (Roswell Park Cancer Institute (C57BL/6J
             Male) Mouse BAC Library) complete sequence
          Length = 169935

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 102   tatacgtattaaattaaatcaacaatgc 129
             ||||| |||||||||| |||||||||||
Sbjct: 18165 tatacatattaaattatatcaacaatgc 18192
to top
>emb|BX855593.12| Zebrafish DNA sequence from clone DKEY-286J2 in linkage group 19,
             complete sequence
          Length = 102409

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 268   atataataacatttggaaat 287
             ||||||||||||||||||||
Sbjct: 54589 atataataacatttggaaat 54570
to top
>emb|CR854851.12| Zebrafish DNA sequence from clone DKEY-98D7 in linkage group 16, complete
              sequence
          Length = 218036

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 11     tttacataaataaacctgtt 30
              ||||||||||||||||||||
Sbjct: 129011 tttacataaataaacctgtt 128992


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,206,793
Number of Sequences: 3902068
Number of extensions: 3206793
Number of successful extensions: 66511
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 66441
Number of HSP's gapped (non-prelim): 70
length of query: 322
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 300
effective length of database: 17,147,199,772
effective search space: 5144159931600
effective search space used: 5144159931600
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top