Clone Name	rbags24n08
Clone Library Name	barley_pub

---

No.	Definition	Score (bits)	E Value
1	gb|M98254.1|BLYPSAD Barley PSI-D subunit of photosystem I (PsaD)...	1031	0.0
2	emb|AJ234406.1|HVU234406 Hordeum vulgare partial mRNA; clone cMW...	1029	0.0
3	gb|BC035756.1| Homo sapiens, clone IMAGE:5763894, mRNA	714	0.0
4	ref|XM_483783.1| Oryza sativa (japonica cultivar-group), mRNA	511	e-142
5	ref|XM_507339.1| PREDICTED Oryza sativa (japonica cultivar-group...	511	e-142
6	gb|AY224449.1| Oryza sativa (japonica cultivar-group) isolate 23...	511	e-142
7	dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D...	511	e-142
8	dbj|AP005524.3| Oryza sativa (japonica cultivar-group) genomic D...	511	e-142
9	dbj|AP005544.3| Oryza sativa (japonica cultivar-group) genomic D...	511	e-142
10	dbj|AK120372.1| Oryza sativa (japonica cultivar-group) cDNA clon...	511	e-142
11	dbj|AK072473.1| Oryza sativa (japonica cultivar-group) cDNA clon...	511	e-142
12	dbj|AK061775.1| Oryza sativa (japonica cultivar-group) cDNA clon...	511	e-142
13	gb|AF147726.1|AF147726 Zea mays ferredoxin-binding subunit (psi-...	389	e-105
14	dbj|AK120366.1| Oryza sativa (japonica cultivar-group) cDNA clon...	367	3e-98
15	gb|AF335592.1| Chlamydomonas reinhardtii photosystem I subunit (...	101	2e-18
16	emb|X79674.1|CRPSAD C.reinhardtii PsaD mRNA	101	2e-18
17	emb|X74419.1|CRPSADA C.reinhardtii psaD mRNA for PSI reaction ce...	101	2e-18
18	gb|U91996.1|PAU91996 Picea abies subunit II of photosystem I (PS...	94	6e-16
19	emb|AJ132477.1|CPA132477 Cyanophora paradoxa mRNA for photosyste...	88	4e-14
20	dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome	54	5e-04
21	emb|X60008.1|NSPSADAG N.sylvestris psaDa gene for PSI-D2	48	0.032
22	emb|BX569694.1| Synechococcus sp. WH8102 complete genome; segmen...	46	0.13
23	gb|CP000110.1| Synechococcus sp. CC9605, complete genome	42	2.0
24	emb|BX640451.1| Bordetella bronchiseptica strain RB50, complete ...	42	2.0
25	emb|BX640412.1| Bordetella pertussis strain Tohama I, complete g...	42	2.0
26	gb|CP000239.1| Synechococcus sp. JA-3-3Ab, complete genome	42	2.0
27	dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete ...	42	2.0
28	gb|CP000009.1| Gluconobacter oxydans 621H, complete genome	42	2.0
29	emb|AL138995.5|CNS01DX0 Human chromosome 14 DNA sequence BAC C-2...	42	2.0
30	gb|AY857266.1| Hypocrea lixii strain TUB F-452 translation elong...	40	7.7
31	ref|XM_481192.1| Oryza sativa (japonica cultivar-group), mRNA	40	7.7
32	gb|AE017180.1| Geobacter sulfurreducens PCA, complete genome	40	7.7
33	ref|NM_054077.2| Mus musculus proline arginine-rich end leucine-...	40	7.7
34	gb|AY286122.1| Cyanidioschyzon merolae DBV201 chromosome 1, comp...	40	7.7
35	gb|CP000353.1| Ralstonia metallidurans CH34 megaplasmid, complet...	40	7.7
36	ref|XM_750264.1| Aspergillus fumigatus Af293 NAD-binding Rossman...	40	7.7
37	gb|AC126792.15| Medicago truncatula clone mth2-8o8, complete seq...	40	7.7
38	emb|X57310.1|NLPCBABC Nocardia lactamdurans pcbAB and pcbC genes...	40	7.7
39	gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome	40	7.7
40	emb|X96862.1|HVGEODBIP H.virescens mRNA for general odorant bind...	40	7.7
41	emb|AL939116.1|SCO939116 Streptomyces coelicolor A3(2) complete ...	40	7.7
42	emb|AL662779.10| Mouse DNA sequence from clone RP23-177A4 on chr...	40	7.7
43	gb|AC119073.1| Oryza sativa ssp. japonica cv. Nipponbare OSJNBa0...	40	7.7
44	gb|AC119071.1| Oryza sativa ssp. japonica cv. Nipponbare OSJNBa0...	40	7.7
45	gb|AC008371.4| Drosophila melanogaster, chromosome 2L, region 21...	40	7.7
46	dbj|AK037150.1| Mus musculus 6 days neonate skin cDNA, RIKEN ful...	40	7.7
47	gb|AC102391.12| Mus musculus chromosome 18, clone RP24-62K22, co...	40	7.7
48	dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D...	40	7.7
49	gb|AC079877.5| Homo sapiens BAC clone RP11-115M4 from 2, complet...	40	7.7
50	gb|AF543112.1| Drosophila leonis strain 6 xanthine dehydrogenase...	40	7.7
51	gb|AF543111.1| Drosophila leonis strain 3 xanthine dehydrogenase...	40	7.7
52	dbj|AP005163.3| Oryza sativa (japonica cultivar-group) genomic D...	40	7.7
53	dbj|AP004130.2| Oryza sativa (japonica cultivar-group) genomic D...	40	7.7
54	dbj|AK109468.1| Oryza sativa (japonica cultivar-group) cDNA clon...	40	7.7
55	emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,comp...	40	7.7
56	gb|AF068843.1|AF068843 Streptomyces coelicolor coenzyme B12 depe...	40	7.7
57	gb|AE003590.3| Drosophila melanogaster chromosome 2L, section 1 ...	40	7.7
58	gb|AC161481.4| Mus musculus chromosome 18, clone RP23-336C20, co...	40	7.7
59	gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome...	40	7.7
60	gb|AC005334.1|AC005334 Drosophila melanogaster DNA sequence (P1s...	40	7.7

---

>gb|M98254.1|BLYPSAD Barley PSI-D subunit of photosystem I (PsaD) mRNA, complete cds
          Length = 810

 Score = 1031 bits (520), Expect = 0.0
 Identities = 520/520 (100%)
 Strand = Plus / Minus

                                                                       
Query: 49  aacctgatgcaaccattatcaccgaatccatcattcaaactcgacaattttaaaattaca 108
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 810 aacctgatgcaaccattatcaccgaatccatcattcaaactcgacaattttaaaattaca 751

                                                                       
Query: 109 ggacgtccatcatcatcgccacccgccaataactaccggtcgatgaactagcacgtacgc 168
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 750 ggacgtccatcatcatcgccacccgccaataactaccggtcgatgaactagcacgtacgc 691

                                                                       
Query: 169 ataagcatgcacatatacgacgtacgagcgagattagatgtcgaaggagttcttgccggt 228
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 690 ataagcatgcacatatacgacgtacgagcgagattagatgtcgaaggagttcttgccggt 631

                                                                       
Query: 229 gaacttgacctcgatggggctgacgttcttgccgatgctgcggaagttctgtcccacgcc 288
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 630 gaacttgacctcgatggggctgacgttcttgccgatgctgcggaagttctgtcccacgcc 571

                                                                       
Query: 289 ctgcctgccggcgttgaccttctccgggtagacgccgtccttggggtggaggtactgcac 348
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 570 ctgcctgccggcgttgaccttctccgggtagacgccgtccttggggtggaggtactgcac 511

                                                                       
Query: 349 ctcgccgttggggaagacgcggtagaactggtaggcgatcttgtacttggagcggaggcg 408
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 ctcgccgttggggaagacgcggtagaactggtaggcgatcttgtacttggagcggaggcg 451

                                                                       
Query: 409 gttgccgagggcgaggcactgctccttgcgggcgagcttgaggaggttggggccctcgcg 468
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 gttgccgagggcgaggcactgctccttgcgggcgagcttgaggaggttggggccctcgcg 391

                                                                       
Query: 469 catgatggcggcgccgccggtgggcatctcgaagacctgctccttgggggaggtccaggt 528
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 catgatggcggcgccgccggtgggcatctcgaagacctgctccttgggggaggtccaggt 331

                                                   
Query: 529 gatgacgtaaaactcctcgacctgggccttgcggagcagc 568
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 gatgacgtaaaactcctcgacctgggccttgcggagcagc 291

---

>emb|AJ234406.1|HVU234406 Hordeum vulgare partial mRNA; clone cMWG0654
          Length = 698

 Score = 1029 bits (519), Expect = 0.0
 Identities = 562/574 (97%), Gaps = 6/574 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   acaatgtcaacatacggtagtatcatcatcaaattaccatgtacatataacctgatgcaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3   acaatgtcaacatacggtagtatcatcatcaaattaccatgtacatataacctgatgcaa 62

                                                                       
Query: 61  ccattatcaccgaatccatcattcaaactcgacaattttaaaattacaggacgtccatca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63  ccattatcaccgaatccatcattcaaactcgacaattttaaaattacaggacgtccatca 122

                                                                       
Query: 121 tcatcgccacccgccaataactaccggtcgatgaactagcacgta----cgcat-aagca 175
           |||||||||||||||| ||||||||||||||||||||||||| ||    | ||| |||||
Sbjct: 123 tcatcgccacccgccagtaactaccggtcgatgaactagcacrtaacgccccattaagca 182

                                                                       
Query: 176 tgcacatatacgacgtacgagcgagattagatgtcgaaggagttcttgccggtgaacttg 235
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 183 tgcacatatacgacgtacgagcgagattagatgtcgaaggagttcttgccggtgaacttg 242

                                                                       
Query: 236 acctcgatggggctgacgttcttgccgatgctgcggaagttctgtcccacgccctgcctg 295
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 acctcgatggggctgacgttcttgccgatgctgcggaagttctgtcccacgccctgcctg 302

                                                                       
Query: 296 ccggcgtt-gaccttctccgggtagacgccgtccttggggtggaggtactgcacctcgcc 354
           |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 303 ccggcgtttgaccttctccgggtagacgccgtccttggggtggaggtactgcacctcgtc 362

                                                                       
Query: 355 gttggggaagacgcggtagaactggtaggcgatcttgtacttggagcggaggcggttgcc 414
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 gttggggtagacgcggtagaactggtaggcgatcttgtacttggagcggaggcggttgcc 422

                                                                       
Query: 415 gagggcgaggcactgctccttgcgggcgagcttgaggaggttggggccctcgcgcatgat 474
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 gagggcgaggcactgctccttgcgggcgagcttgaggaggttggggccctcgcgcatgat 482

                                                                       
Query: 475 ggcggcgccgccggtgggcatctcgaagacctgctccttgggggaggtccaggtgatgac 534
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 ggcggcgccgccggtgggcatctcgaagacctgctccttgggggaggtccaggtgatgac 542

                                             
Query: 535 gtaaaactcctcgacctgggccttgcggagcagc 568
           ||| ||||||||||||||||||||||||||||||
Sbjct: 543 gtagaactcctcgacctgggccttgcggagcagc 576

---

>gb|BC035756.1| Homo sapiens, clone IMAGE:5763894, mRNA
          Length = 864

 Score =  714 bits (360), Expect = 0.0
 Identities = 379/385 (98%), Gaps = 4/385 (1%)
 Strand = Plus / Minus

                                                                       
Query: 180 catatacgacgtacgagcgagattagatgtcgaaggagttcttgccggtgaacttgacct 239
           |||||||||||||    |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 catatacgacgta----cgagattagatgtcgaaggagttcttgccggtgaacttgacct 603

                                                                       
Query: 240 cgatggggctgacgttcttgccgatgctgcggaagttctgtcccacgccctgcctgccgg 299
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 602 cgatggggctgacgttcttgccgatgctgcggaagttctgccccacgccctgcctgccgg 543

                                                                       
Query: 300 cgttgaccttctccgggtagacgccgtccttggggtggaggtactgcacctcgccgttgg 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 cgttgaccttctccgggtagacgccgtccttggggtggaggtactgcacctcgccgttgg 483

                                                                       
Query: 360 ggaagacgcggtagaactggtaggcgatcttgtacttggagcggaggcggttgccgaggg 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 ggaagacgcggtagaactggtaggcgatcttgtacttggagcggaggcggttgccgaggg 423

                                                                       
Query: 420 cgaggcactgctccttgcgggcgagcttgaggaggttggggccctcgcgcatgatggcgg 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 cgaggcactgctccttgcgggcgagcttgaggaggttggggccctcgcgcatgatggcgg 363

                                                                       
Query: 480 cgccgccggtgggcatctcgaagacctgctccttgggggaggtccaggtgatgacgtaaa 539
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 362 cgccgccggtgggcatctcgaagacctgctccttgggggaggtccaggtgatgacgtaga 303

                                    
Query: 540 actcctcgacctgggccttgcggag 564
           |||||||||||||||||||||||||
Sbjct: 302 actcctcgacctgggccttgcggag 278



 Score =  236 bits (119), Expect = 6e-59
 Identities = 157/167 (94%), Gaps = 7/167 (4%)
 Strand = Plus / Minus

                                                                       
Query: 9   aacatacggtagtatcatcatcaaattaccatgtacatataacctgatgcaaccattatc 68
           ||||||| | ||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct: 818 aacatacagcagtatcatcatcaaattaccatgtacatataacctgatgcatc-attatc 760

                                                                       
Query: 69  accga----atccatcattcaaactcgacaattttaaaattacaggacgtccatcatcat 124
           |||||    ||||||||||||||||||||||||  |||||||||||||||||||||||||
Sbjct: 759 accgatcgaatccatcattcaaactcgacaatt--aaaattacaggacgtccatcatcat 702

                                                          
Query: 125 cgccacccgccaataactaccggtcgatgaactagcacgtacgcata 171
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 701 cgccacccgccaataactaccggtcgatgaactagcacgtacgcata 655

---

>ref|XM_483783.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 831

 Score =  511 bits (258), Expect = e-142
 Identities = 336/362 (92%)
 Strand = Plus / Minus

                                                                       
Query: 203 tagatgtcgaaggagttcttgccggtgaacttgacctcgatggggctgacgttcttgccg 262
           ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 654 tagatgtcgaagacgttcttgccggtgaacttgacctcgatggggctgacgttcttgccg 595

                                                                       
Query: 263 atgctgcggaagttctgtcccacgccctgcctgccggcgttgaccttctccgggtagacg 322
           ||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct: 594 atgctgcggaagttctggccgacgccctgcctgccggcgttgaccttctccgggtagacg 535

                                                                       
Query: 323 ccgtccttggggtggaggtactgcacctcgccgttggggaagacgcggtagaactggtag 382
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 534 ccgtccttggggtggaggtactgcacctcgccattggggaagacgcggtagaactggtag 475

                                                                       
Query: 383 gcgatcttgtacttggagcggaggcggttgccgagggcgaggcactgctccttgcgggcg 442
             ||||||||||||||||||||| | | |||| ||||| |||||||||||||| | ||| 
Sbjct: 474 ttgatcttgtacttggagcggagcctggtgcccagggccaggcactgctccttcctggcc 415

                                                                       
Query: 443 agcttgaggaggttggggccctcgcgcatgatggcggcgccgccggtgggcatctcgaag 502
           ||||| || ||||||||||||||||||||||||||||||||||| |||||||||||||| 
Sbjct: 414 agcttcagcaggttggggccctcgcgcatgatggcggcgccgcccgtgggcatctcgaac 355

                                                                       
Query: 503 acctgctccttgggggaggtccaggtgatgacgtaaaactcctcgacctgggccttgcgg 562
           |||||||||||||| || ||||| ||||||||||| |||||||| ||||| ||||| |||
Sbjct: 354 acctgctccttgggcgacgtccatgtgatgacgtagaactcctccacctgcgccttccgg 295

             
Query: 563 ag 564
           ||
Sbjct: 294 ag 293

---

>ref|XM_507339.1| PREDICTED Oryza sativa (japonica cultivar-group), P0604E01.24 mRNA
          Length = 855

 Score =  511 bits (258), Expect = e-142
 Identities = 336/362 (92%)
 Strand = Plus / Minus

                                                                       
Query: 203 tagatgtcgaaggagttcttgccggtgaacttgacctcgatggggctgacgttcttgccg 262
           ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 tagatgtcgaagacgttcttgccggtgaacttgacctcgatggggctgacgttcttgccg 619

                                                                       
Query: 263 atgctgcggaagttctgtcccacgccctgcctgccggcgttgaccttctccgggtagacg 322
           ||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct: 618 atgctgcggaagttctggccgacgccctgcctgccggcgttgaccttctccgggtagacg 559

                                                                       
Query: 323 ccgtccttggggtggaggtactgcacctcgccgttggggaagacgcggtagaactggtag 382
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 558 ccgtccttggggtggaggtactgcacctcgccattggggaagacgcggtagaactggtag 499

                                                                       
Query: 383 gcgatcttgtacttggagcggaggcggttgccgagggcgaggcactgctccttgcgggcg 442
             ||||||||||||||||||||| | | |||| ||||| |||||||||||||| | ||| 
Sbjct: 498 ttgatcttgtacttggagcggagcctggtgcccagggccaggcactgctccttcctggcc 439

                                                                       
Query: 443 agcttgaggaggttggggccctcgcgcatgatggcggcgccgccggtgggcatctcgaag 502
           ||||| || ||||||||||||||||||||||||||||||||||| |||||||||||||| 
Sbjct: 438 agcttcagcaggttggggccctcgcgcatgatggcggcgccgcccgtgggcatctcgaac 379

                                                                       
Query: 503 acctgctccttgggggaggtccaggtgatgacgtaaaactcctcgacctgggccttgcgg 562
           |||||||||||||| || ||||| ||||||||||| |||||||| ||||| ||||| |||
Sbjct: 378 acctgctccttgggcgacgtccatgtgatgacgtagaactcctccacctgcgccttccgg 319

             
Query: 563 ag 564
           ||
Sbjct: 318 ag 317

---

>gb|AY224449.1| Oryza sativa (japonica cultivar-group) isolate 23061 chloroplast
           photosystem I reaction center subunit II precursor-like
           protein mRNA, complete cds
          Length = 612

 Score =  511 bits (258), Expect = e-142
 Identities = 336/362 (92%)
 Strand = Plus / Minus

                                                                       
Query: 203 tagatgtcgaaggagttcttgccggtgaacttgacctcgatggggctgacgttcttgccg 262
           ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 tagatgtcgaagacgttcttgccggtgaacttgacctcgatggggctgacgttcttgccg 552

                                                                       
Query: 263 atgctgcggaagttctgtcccacgccctgcctgccggcgttgaccttctccgggtagacg 322
           ||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct: 551 atgctgcggaagttctggccgacgccctgcctgccggcgttgaccttctccgggtagacg 492

                                                                       
Query: 323 ccgtccttggggtggaggtactgcacctcgccgttggggaagacgcggtagaactggtag 382
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 491 ccgtccttggggtggaggtactgcacctcgccattggggaagacgcggtagaactggtag 432

                                                                       
Query: 383 gcgatcttgtacttggagcggaggcggttgccgagggcgaggcactgctccttgcgggcg 442
             ||||||||||||||||||||| | | |||| ||||| |||||||||||||| | ||| 
Sbjct: 431 ttgatcttgtacttggagcggagcctggtgcccagggccaggcactgctccttcctggcc 372

                                                                       
Query: 443 agcttgaggaggttggggccctcgcgcatgatggcggcgccgccggtgggcatctcgaag 502
           ||||| || ||||||||||||||||||||||||||||||||||| |||||||||||||| 
Sbjct: 371 agcttcagcaggttggggccctcgcgcatgatggcggcgccgcccgtgggcatctcgaac 312

                                                                       
Query: 503 acctgctccttgggggaggtccaggtgatgacgtaaaactcctcgacctgggccttgcgg 562
           |||||||||||||| || ||||| ||||||||||| |||||||| ||||| ||||| |||
Sbjct: 311 acctgctccttgggcgacgtccatgtgatgacgtagaactcctccacctgcgccttccgg 252

             
Query: 563 ag 564
           ||
Sbjct: 251 ag 250

---

>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score =  511 bits (258), Expect = e-142
 Identities = 336/362 (92%)
 Strand = Plus / Plus

                                                                            
Query: 203      tagatgtcgaaggagttcttgccggtgaacttgacctcgatggggctgacgttcttgccg 262
                ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28076321 tagatgtcgaagacgttcttgccggtgaacttgacctcgatggggctgacgttcttgccg 28076380

                                                                            
Query: 263      atgctgcggaagttctgtcccacgccctgcctgccggcgttgaccttctccgggtagacg 322
                ||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct: 28076381 atgctgcggaagttctggccgacgccctgcctgccggcgttgaccttctccgggtagacg 28076440

                                                                            
Query: 323      ccgtccttggggtggaggtactgcacctcgccgttggggaagacgcggtagaactggtag 382
                |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 28076441 ccgtccttggggtggaggtactgcacctcgccattggggaagacgcggtagaactggtag 28076500

                                                                            
Query: 383      gcgatcttgtacttggagcggaggcggttgccgagggcgaggcactgctccttgcgggcg 442
                  ||||||||||||||||||||| | | |||| ||||| |||||||||||||| | ||| 
Sbjct: 28076501 ttgatcttgtacttggagcggagcctggtgcccagggccaggcactgctccttcctggcc 28076560

                                                                            
Query: 443      agcttgaggaggttggggccctcgcgcatgatggcggcgccgccggtgggcatctcgaag 502
                ||||| || ||||||||||||||||||||||||||||||||||| |||||||||||||| 
Sbjct: 28076561 agcttcagcaggttggggccctcgcgcatgatggcggcgccgcccgtgggcatctcgaac 28076620

                                                                            
Query: 503      acctgctccttgggggaggtccaggtgatgacgtaaaactcctcgacctgggccttgcgg 562
                |||||||||||||| || ||||| ||||||||||| |||||||| ||||| ||||| |||
Sbjct: 28076621 acctgctccttgggcgacgtccatgtgatgacgtagaactcctccacctgcgccttccgg 28076680

                  
Query: 563      ag 564
                ||
Sbjct: 28076681 ag 28076682



 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 474      tggcggcgccgccggtgggc 493
                ||||||||||||||||||||
Sbjct: 10502258 tggcggcgccgccggtgggc 10502239

---

>dbj|AP005524.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
              clone:P0562A06
          Length = 154198

 Score =  511 bits (258), Expect = e-142
 Identities = 336/362 (92%)
 Strand = Plus / Plus

                                                                          
Query: 203    tagatgtcgaaggagttcttgccggtgaacttgacctcgatggggctgacgttcttgccg 262
              ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153813 tagatgtcgaagacgttcttgccggtgaacttgacctcgatggggctgacgttcttgccg 153872

                                                                          
Query: 263    atgctgcggaagttctgtcccacgccctgcctgccggcgttgaccttctccgggtagacg 322
              ||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct: 153873 atgctgcggaagttctggccgacgccctgcctgccggcgttgaccttctccgggtagacg 153932

                                                                          
Query: 323    ccgtccttggggtggaggtactgcacctcgccgttggggaagacgcggtagaactggtag 382
              |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 153933 ccgtccttggggtggaggtactgcacctcgccattggggaagacgcggtagaactggtag 153992

                                                                          
Query: 383    gcgatcttgtacttggagcggaggcggttgccgagggcgaggcactgctccttgcgggcg 442
                ||||||||||||||||||||| | | |||| ||||| |||||||||||||| | ||| 
Sbjct: 153993 ttgatcttgtacttggagcggagcctggtgcccagggccaggcactgctccttcctggcc 154052

                                                                          
Query: 443    agcttgaggaggttggggccctcgcgcatgatggcggcgccgccggtgggcatctcgaag 502
              ||||| || ||||||||||||||||||||||||||||||||||| |||||||||||||| 
Sbjct: 154053 agcttcagcaggttggggccctcgcgcatgatggcggcgccgcccgtgggcatctcgaac 154112

                                                                          
Query: 503    acctgctccttgggggaggtccaggtgatgacgtaaaactcctcgacctgggccttgcgg 562
              |||||||||||||| || ||||| ||||||||||| |||||||| ||||| ||||| |||
Sbjct: 154113 acctgctccttgggcgacgtccatgtgatgacgtagaactcctccacctgcgccttccgg 154172

                
Query: 563    ag 564
              ||
Sbjct: 154173 ag 154174

---

>dbj|AP005544.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0604E01
          Length = 159049

 Score =  511 bits (258), Expect = e-142
 Identities = 336/362 (92%)
 Strand = Plus / Plus

                                                                         
Query: 203   tagatgtcgaaggagttcttgccggtgaacttgacctcgatggggctgacgttcttgccg 262
             ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73816 tagatgtcgaagacgttcttgccggtgaacttgacctcgatggggctgacgttcttgccg 73875

                                                                         
Query: 263   atgctgcggaagttctgtcccacgccctgcctgccggcgttgaccttctccgggtagacg 322
             ||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct: 73876 atgctgcggaagttctggccgacgccctgcctgccggcgttgaccttctccgggtagacg 73935

                                                                         
Query: 323   ccgtccttggggtggaggtactgcacctcgccgttggggaagacgcggtagaactggtag 382
             |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 73936 ccgtccttggggtggaggtactgcacctcgccattggggaagacgcggtagaactggtag 73995

                                                                         
Query: 383   gcgatcttgtacttggagcggaggcggttgccgagggcgaggcactgctccttgcgggcg 442
               ||||||||||||||||||||| | | |||| ||||| |||||||||||||| | ||| 
Sbjct: 73996 ttgatcttgtacttggagcggagcctggtgcccagggccaggcactgctccttcctggcc 74055

                                                                         
Query: 443   agcttgaggaggttggggccctcgcgcatgatggcggcgccgccggtgggcatctcgaag 502
             ||||| || ||||||||||||||||||||||||||||||||||| |||||||||||||| 
Sbjct: 74056 agcttcagcaggttggggccctcgcgcatgatggcggcgccgcccgtgggcatctcgaac 74115

                                                                         
Query: 503   acctgctccttgggggaggtccaggtgatgacgtaaaactcctcgacctgggccttgcgg 562
             |||||||||||||| || ||||| ||||||||||| |||||||| ||||| ||||| |||
Sbjct: 74116 acctgctccttgggcgacgtccatgtgatgacgtagaactcctccacctgcgccttccgg 74175

               
Query: 563   ag 564
             ||
Sbjct: 74176 ag 74177

---

>dbj|AK120372.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013070L10, full
           insert sequence
          Length = 855

 Score =  511 bits (258), Expect = e-142
 Identities = 336/362 (92%)
 Strand = Plus / Minus

                                                                       
Query: 203 tagatgtcgaaggagttcttgccggtgaacttgacctcgatggggctgacgttcttgccg 262
           ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 tagatgtcgaagacgttcttgccggtgaacttgacctcgatggggctgacgttcttgccg 619

                                                                       
Query: 263 atgctgcggaagttctgtcccacgccctgcctgccggcgttgaccttctccgggtagacg 322
           ||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct: 618 atgctgcggaagttctggccgacgccctgcctgccggcgttgaccttctccgggtagacg 559

                                                                       
Query: 323 ccgtccttggggtggaggtactgcacctcgccgttggggaagacgcggtagaactggtag 382
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 558 ccgtccttggggtggaggtactgcacctcgccattggggaagacgcggtagaactggtag 499

                                                                       
Query: 383 gcgatcttgtacttggagcggaggcggttgccgagggcgaggcactgctccttgcgggcg 442
             ||||||||||||||||||||| | | |||| ||||| |||||||||||||| | ||| 
Sbjct: 498 ttgatcttgtacttggagcggagcctggtgcccagggccaggcactgctccttcctggcc 439

                                                                       
Query: 443 agcttgaggaggttggggccctcgcgcatgatggcggcgccgccggtgggcatctcgaag 502
           ||||| || ||||||||||||||||||||||||||||||||||| |||||||||||||| 
Sbjct: 438 agcttcagcaggttggggccctcgcgcatgatggcggcgccgcccgtgggcatctcgaac 379

                                                                       
Query: 503 acctgctccttgggggaggtccaggtgatgacgtaaaactcctcgacctgggccttgcgg 562
           |||||||||||||| || ||||| ||||||||||| |||||||| ||||| ||||| |||
Sbjct: 378 acctgctccttgggcgacgtccatgtgatgacgtagaactcctccacctgcgccttccgg 319

             
Query: 563 ag 564
           ||
Sbjct: 318 ag 317

---

>dbj|AK072473.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023114B22, full
            insert sequence
          Length = 2756

 Score =  511 bits (258), Expect = e-142
 Identities = 336/362 (92%)
 Strand = Plus / Minus

                                                                        
Query: 203  tagatgtcgaaggagttcttgccggtgaacttgacctcgatggggctgacgttcttgccg 262
            ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2579 tagatgtcgaagacgttcttgccggtgaacttgacctcgatggggctgacgttcttgccg 2520

                                                                        
Query: 263  atgctgcggaagttctgtcccacgccctgcctgccggcgttgaccttctccgggtagacg 322
            ||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct: 2519 atgctgcggaagttctggccgacgccctgcctgccggcgttgaccttctccgggtagacg 2460

                                                                        
Query: 323  ccgtccttggggtggaggtactgcacctcgccgttggggaagacgcggtagaactggtag 382
            |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 2459 ccgtccttggggtggaggtactgcacctcgccattggggaagacgcggtagaactggtag 2400

                                                                        
Query: 383  gcgatcttgtacttggagcggaggcggttgccgagggcgaggcactgctccttgcgggcg 442
              ||||||||||||||||||||| | | |||| ||||| |||||||||||||| | ||| 
Sbjct: 2399 ttgatcttgtacttggagcggagcctggtgcccagggccaggcactgctccttcctggcc 2340

                                                                        
Query: 443  agcttgaggaggttggggccctcgcgcatgatggcggcgccgccggtgggcatctcgaag 502
            ||||| || ||||||||||||||||||||||||||||||||||| |||||||||||||| 
Sbjct: 2339 agcttcagcaggttggggccctcgcgcatgatggcggcgccgcccgtgggcatctcgaac 2280

                                                                        
Query: 503  acctgctccttgggggaggtccaggtgatgacgtaaaactcctcgacctgggccttgcgg 562
            |||||||||||||| || ||||| ||||||||||| |||||||| ||||| ||||| |||
Sbjct: 2279 acctgctccttgggcgacgtccatgtgatgacgtagaactcctccacctgcgccttccgg 2220

              
Query: 563  ag 564
            ||
Sbjct: 2219 ag 2218

---

>dbj|AK061775.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-039-D04, full
           insert sequence
          Length = 831

 Score =  511 bits (258), Expect = e-142
 Identities = 336/362 (92%)
 Strand = Plus / Minus

                                                                       
Query: 203 tagatgtcgaaggagttcttgccggtgaacttgacctcgatggggctgacgttcttgccg 262
           ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 654 tagatgtcgaagacgttcttgccggtgaacttgacctcgatggggctgacgttcttgccg 595

                                                                       
Query: 263 atgctgcggaagttctgtcccacgccctgcctgccggcgttgaccttctccgggtagacg 322
           ||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct: 594 atgctgcggaagttctggccgacgccctgcctgccggcgttgaccttctccgggtagacg 535

                                                                       
Query: 323 ccgtccttggggtggaggtactgcacctcgccgttggggaagacgcggtagaactggtag 382
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 534 ccgtccttggggtggaggtactgcacctcgccattggggaagacgcggtagaactggtag 475

                                                                       
Query: 383 gcgatcttgtacttggagcggaggcggttgccgagggcgaggcactgctccttgcgggcg 442
             ||||||||||||||||||||| | | |||| ||||| |||||||||||||| | ||| 
Sbjct: 474 ttgatcttgtacttggagcggagcctggtgcccagggccaggcactgctccttcctggcc 415

                                                                       
Query: 443 agcttgaggaggttggggccctcgcgcatgatggcggcgccgccggtgggcatctcgaag 502
           ||||| || ||||||||||||||||||||||||||||||||||| |||||||||||||| 
Sbjct: 414 agcttcagcaggttggggccctcgcgcatgatggcggcgccgcccgtgggcatctcgaac 355

                                                                       
Query: 503 acctgctccttgggggaggtccaggtgatgacgtaaaactcctcgacctgggccttgcgg 562
           |||||||||||||| || ||||| ||||||||||| |||||||| ||||| ||||| |||
Sbjct: 354 acctgctccttgggcgacgtccatgtgatgacgtagaactcctccacctgcgccttccgg 295

             
Query: 563 ag 564
           ||
Sbjct: 294 ag 293

---

>gb|AF147726.1|AF147726 Zea mays ferredoxin-binding subunit (psi-d1) mRNA, complete cds
          Length = 646

 Score =  389 bits (196), Expect = e-105
 Identities = 253/272 (93%)
 Strand = Plus / Minus

                                                                       
Query: 208 gtcgaaggagttcttgccggtgaacttgacctcgatggggctgacgttcttgccgatgct 267
           |||||||| | ||||||||||||||||||| ||||||||| |||||||||||||||||||
Sbjct: 384 gtcgaaggtgctcttgccggtgaacttgacgtcgatggggttgacgttcttgccgatgct 325

                                                                       
Query: 268 gcggaagttctgtcccacgccctgcctgccggcgttgaccttctccgggtagacgccgtc 327
           |||||||||||| || ||||||| |||||||| |||||||||||||||||||||||||||
Sbjct: 324 gcggaagttctggccgacgccctccctgccggggttgaccttctccgggtagacgccgtc 265

                                                                       
Query: 328 cttggggtggaggtactgcacctcgccgttggggaagacgcggtagaactggtaggcgat 387
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 264 cttggggtggaggtactgcacctcgccgttggggaagacgcggtagaactggtaggtgat 205

                                                                       
Query: 388 cttgtacttggagcggaggcggttgccgagggcgaggcactgctccttgcgggcgagctt 447
           ||||||||||||||| || | | ||||||| |||||||||||||||||||| || |||||
Sbjct: 204 cttgtacttggagcgcagcctggtgccgagcgcgaggcactgctccttgcgcgccagctt 145

                                           
Query: 448 gaggaggttggggccctcgcgcatgatggcgg 479
            ||||||||||| ||||| |||||||||||||
Sbjct: 144 caggaggttgggcccctcccgcatgatggcgg 113

---

>dbj|AK120366.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013069H06, full
           insert sequence
          Length = 397

 Score =  367 bits (185), Expect = 3e-98
 Identities = 221/233 (94%)
 Strand = Plus / Minus

                                                                       
Query: 203 tagatgtcgaaggagttcttgccggtgaacttgacctcgatggggctgacgttcttgccg 262
           ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 tagatgtcgaagacgttcttgccggtgaacttgacctcgatggggctgacgttcttgccg 186

                                                                       
Query: 263 atgctgcggaagttctgtcccacgccctgcctgccggcgttgaccttctccgggtagacg 322
           ||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct: 185 atgctgcggaagttctggccgacgccctgcctgccggcgttgaccttctccgggtagacg 126

                                                                       
Query: 323 ccgtccttggggtggaggtactgcacctcgccgttggggaagacgcggtagaactggtag 382
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 125 ccgtccttggggtggaggtactgcacctcgccattggggaagacgcggtagaactggtag 66

                                                                
Query: 383 gcgatcttgtacttggagcggaggcggttgccgagggcgaggcactgctcctt 435
             ||||||||||||||||||||| | | |||| ||||| ||||||||||||||
Sbjct: 65  ttgatcttgtacttggagcggagcctggtgcccagggccaggcactgctcctt 13

---

>gb|AF335592.1| Chlamydomonas reinhardtii photosystem I subunit (PsaD) gene, complete
            cds; nuclear gene for chloroplast product
          Length = 2046

 Score =  101 bits (51), Expect = 2e-18
 Identities = 123/147 (83%)
 Strand = Plus / Minus

                                                                        
Query: 229  gaacttgacctcgatggggctgacgttcttgccgatgctgcggaagttctgtcccacgcc 288
            ||||||||||| ||||||| ||||||||| |||||||| ||| | ||||||   | ||||
Sbjct: 1381 gaacttgaccttgatggggttgacgttctggccgatgcggcgcatgttctggttcgcgcc 1322

                                                                        
Query: 289  ctgcctgccggcgttgaccttctccgggtagacgccgtccttggggtggaggtactgcac 348
            |   | ||| ||||| |||||||| ||||||||||||||    ||||| |||||||||||
Sbjct: 1321 cacgcggccagcgttcaccttctcggggtagacgccgtcagcagggtgcaggtactgcac 1262

                                       
Query: 349  ctcgccgttggggaagacgcggtagaa 375
            || ||||| ||||||||||||||||||
Sbjct: 1261 cttgccgtcggggaagacgcggtagaa 1235



 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 86/98 (87%)
 Strand = Plus / Minus

                                                                        
Query: 416  agggcgaggcactgctccttgcgggcgagcttgaggaggttggggccctcgcgcatgatg 475
            ||||||||||||||||||||   | ||| ||| || ||||||||||||| ||||||||| 
Sbjct: 1194 agggcgaggcactgctccttcttgccgaacttcagcaggttggggccctggcgcatgata 1135

                                                  
Query: 476  gcggcgccgccggtgggcatctcgaagacctgctcctt 513
            ||||| ||||| |||||||||||||||| |||||||||
Sbjct: 1134 gcggcaccgccagtgggcatctcgaagatctgctcctt 1097

---

>emb|X79674.1|CRPSAD C.reinhardtii PsaD mRNA
          Length = 991

 Score =  101 bits (51), Expect = 2e-18
 Identities = 123/147 (83%)
 Strand = Plus / Minus

                                                                       
Query: 229 gaacttgacctcgatggggctgacgttcttgccgatgctgcggaagttctgtcccacgcc 288
           ||||||||||| ||||||| ||||||||| |||||||| ||| | ||||||   | ||||
Sbjct: 576 gaacttgaccttgatggggttgacgttctggccgatgcggcgcatgttctggttcgcgcc 517

                                                                       
Query: 289 ctgcctgccggcgttgaccttctccgggtagacgccgtccttggggtggaggtactgcac 348
           |   | ||| ||||| |||||||| ||||||||||||||    ||||| |||||||||||
Sbjct: 516 cacgcggccagcgttcaccttctcggggtagacgccgtcagcagggtgcaggtactgcac 457

                                      
Query: 349 ctcgccgttggggaagacgcggtagaa 375
           || ||||| ||||||||||||||||||
Sbjct: 456 cttgccgtcggggaagacgcggtagaa 430



 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 86/98 (87%)
 Strand = Plus / Minus

                                                                       
Query: 416 agggcgaggcactgctccttgcgggcgagcttgaggaggttggggccctcgcgcatgatg 475
           ||||||||||||||||||||   | ||| ||| || ||||||||||||| ||||||||| 
Sbjct: 389 agggcgaggcactgctccttcttgccgaacttcagcaggttggggccctggcgcatgata 330

                                                 
Query: 476 gcggcgccgccggtgggcatctcgaagacctgctcctt 513
           ||||| ||||| |||||||||||||||| |||||||||
Sbjct: 329 gcggcaccgccagtgggcatctcgaagatctgctcctt 292

---

>emb|X74419.1|CRPSADA C.reinhardtii psaD mRNA for PSI reaction center, subunit II
          Length = 978

 Score =  101 bits (51), Expect = 2e-18
 Identities = 123/147 (83%)
 Strand = Plus / Minus

                                                                       
Query: 229 gaacttgacctcgatggggctgacgttcttgccgatgctgcggaagttctgtcccacgcc 288
           ||||||||||| ||||||| ||||||||| |||||||| ||| | ||||||   | ||||
Sbjct: 570 gaacttgaccttgatggggttgacgttctggccgatgcggcgcatgttctggttcgcgcc 511

                                                                       
Query: 289 ctgcctgccggcgttgaccttctccgggtagacgccgtccttggggtggaggtactgcac 348
           |   | ||| ||||| |||||||| ||||||||||||||    ||||| |||||||||||
Sbjct: 510 cacgcggccagcgttcaccttctcggggtagacgccgtcagcagggtgcaggtactgcac 451

                                      
Query: 349 ctcgccgttggggaagacgcggtagaa 375
           || ||||| ||||||||||||||||||
Sbjct: 450 cttgccgtcggggaagacgcggtagaa 424



 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 86/98 (87%)
 Strand = Plus / Minus

                                                                       
Query: 416 agggcgaggcactgctccttgcgggcgagcttgaggaggttggggccctcgcgcatgatg 475
           ||||||||||||||||||||   | ||| ||| || ||||||||||||| ||||||||| 
Sbjct: 383 agggcgaggcactgctccttcttgccgaacttcagcaggttggggccctggcgcatgata 324

                                                 
Query: 476 gcggcgccgccggtgggcatctcgaagacctgctcctt 513
           ||||| ||||| |||||||||||||||| |||||||||
Sbjct: 323 gcggcaccgccagtgggcatctcgaagatctgctcctt 286

---

>gb|U91996.1|PAU91996 Picea abies subunit II of photosystem I (PSAD) gene, nuclear gene
           encoding chloroplast protein, partial cds
          Length = 400

 Score = 93.7 bits (47), Expect = 6e-16
 Identities = 92/107 (85%)
 Strand = Plus / Minus

                                                                       
Query: 296 ccggcgttgaccttctccgggtagacgccgtccttggggtggaggtactgcacctcgccg 355
           |||| ||| |||||||||||||||||||||||||| ||||| |||||||| || || |||
Sbjct: 182 ccggggttcaccttctccgggtagacgccgtccttagggtgcaggtactgaacttctccg 123

                                                          
Query: 356 ttggggaagacgcggtagaactggtaggcgatcttgtacttggagcg 402
           || || || |||||||||||||||||    |||||||| ||||||||
Sbjct: 122 tttggaaaaacgcggtagaactggtattttatcttgtatttggagcg 76

---

>emb|AJ132477.1|CPA132477 Cyanophora paradoxa mRNA for photosystem I reaction centre subunit
           II precursor
          Length = 958

 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 71/80 (88%)
 Strand = Plus / Minus

                                                                       
Query: 295 gccggcgttgaccttctccgggtagacgccgtccttggggtggaggtactgcacctcgcc 354
           ||||| |||||||||||||||| ||||||| ||||||||||||||| |||| ||||||||
Sbjct: 563 gccggggttgaccttctccgggaagacgccatccttggggtggaggaactgaacctcgcc 504

                               
Query: 355 gttggggaagacgcggtaga 374
           |  |||| | ||||||||||
Sbjct: 503 ggaggggtaaacgcggtaga 484



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 78/93 (83%)
 Strand = Plus / Minus

                                                                       
Query: 412 gccgagggcgaggcactgctccttgcgggcgagcttgaggaggttggggccctcgcgcat 471
           ||||||||| | |||||||||||||||||||||   ||| |||||   |||  |||||||
Sbjct: 443 gccgagggcaatgcactgctccttgcgggcgaggcggagcaggttctcgccagcgcgcat 384

                                            
Query: 472 gatggcggcgccgccggtgggcatctcgaagac 504
           ||| |||||||||||||| || | |||||||||
Sbjct: 383 gatcgcggcgccgccggtcgggagctcgaagac 351



 Score = 40.1 bits (20), Expect = 7.7
 Identities = 38/44 (86%)
 Strand = Plus / Minus

                                                       
Query: 521 gtccaggtgatgacgtaaaactcctcgacctgggccttgcggag 564
           ||||||||||||  ||| |||||||| ||||  |||||||||||
Sbjct: 334 gtccaggtgatgctgtagaactcctcaacctcagccttgcggag 291

---

>dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome
          Length = 4659019

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 30/31 (96%)
 Strand = Plus / Minus

                                              
Query: 482     ccgccggtgggcatctcgaagacctgctcct 512
               |||||||| ||||||||||||||||||||||
Sbjct: 3909320 ccgccggtcggcatctcgaagacctgctcct 3909290

---

>emb|X60008.1|NSPSADAG N.sylvestris psaDa gene for PSI-D2
          Length = 1260

 Score = 48.1 bits (24), Expect = 0.032
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                           
Query: 533 acgtaaaactcctcgacctgggccttgcggag 564
           |||||||||||||| || ||||||||||||||
Sbjct: 825 acgtaaaactcctcaacttgggccttgcggag 794

---

>emb|BX569694.1| Synechococcus sp. WH8102 complete genome; segment 6/7
          Length = 349122

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                             
Query: 413    ccgagggcgaggcactgctccttgcgggcga 443
              |||||||| |||||||| |||||||||||||
Sbjct: 199517 ccgagggcaaggcactgttccttgcgggcga 199487

---

>gb|CP000110.1| Synechococcus sp. CC9605, complete genome
          Length = 2510659

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                               
Query: 411    tgccgagggcgaggcactgctccttgcgggcga 443
              ||||||||||||||||||| || ||||| ||||
Sbjct: 401330 tgccgagggcgaggcactgttctttgcgagcga 401362

---

>emb|BX640451.1| Bordetella bronchiseptica strain RB50, complete genome; segment 15/16
          Length = 343473

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 463    ctcgcgcatgatggcggcgccgccg 487
              ||||||||||||| |||||||||||
Sbjct: 141433 ctcgcgcatgatgccggcgccgccg 141409

---

>emb|BX640412.1| Bordetella pertussis strain Tohama I, complete genome; segment 2/12
          Length = 348171

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 463    ctcgcgcatgatggcggcgccgccg 487
              ||||||||||||| |||||||||||
Sbjct: 297223 ctcgcgcatgatgccggcgccgccg 297199

---

>gb|CP000239.1| Synechococcus sp. JA-3-3Ab, complete genome
          Length = 2932766

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 475    ggcggcgccgccggtgggcat 495
              |||||||||||||||||||||
Sbjct: 552084 ggcggcgccgccggtgggcat 552064



 Score = 40.1 bits (20), Expect = 7.7
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                              
Query: 412    gccgagggcgaggcactgctccttgcgggcga 443
              |||||| || ||||||||||| ||||||||||
Sbjct: 552147 gccgagcgccaggcactgctctttgcgggcga 552116

---

>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                                
Query: 237     cctcgatggggctgacgttcttgccgatgctgc 269
               ||||||||| |||| ||||| ||||||||||||
Sbjct: 7769276 cctcgatggtgctgccgttcctgccgatgctgc 7769308



 Score = 40.1 bits (20), Expect = 7.7
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 462    cctcgcgcatgatggcggcgccgccggt 489
              |||||||||||| |||| ||||||||||
Sbjct: 183483 cctcgcgcatgaaggcgccgccgccggt 183510

---

>gb|CP000009.1| Gluconobacter oxydans 621H, complete genome
          Length = 2702173

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                            
Query: 463     ctcgcgcatgatggcggcgccgccggtgg 491
               |||||||||||||||||||| || |||||
Sbjct: 2047522 ctcgcgcatgatggcggcgcagcgggtgg 2047550

---

>emb|AL138995.5|CNS01DX0 Human chromosome 14 DNA sequence BAC C-2588E21 of library CalTech-D
             from chromosome 14 of Homo sapiens (Human), complete
             sequence
          Length = 163312

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 504   cctgctccttgggggaggtcc 524
             |||||||||||||||||||||
Sbjct: 93360 cctgctccttgggggaggtcc 93380

---

>gb|AY857266.1| Hypocrea lixii strain TUB F-452 translation elongation factor 1
           alpha (tef1) gene, partial sequence
          Length = 921

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 212 aaggagttcttgccggtgaacttg 235
           |||||| |||||||||||||||||
Sbjct: 852 aaggaggtcttgccggtgaacttg 829

---

>ref|XM_481192.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 582

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 474 tggcggcgccgccggtgggc 493
           ||||||||||||||||||||
Sbjct: 298 tggcggcgccgccggtgggc 279

---

>gb|AE017180.1| Geobacter sulfurreducens PCA, complete genome
          Length = 3814139

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 471    tgatggcggcgccgccggtg 490
              ||||||||||||||||||||
Sbjct: 803748 tgatggcggcgccgccggtg 803767



 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 471    tgatggcggcgccgccggtg 490
              ||||||||||||||||||||
Sbjct: 802710 tgatggcggcgccgccggtg 802729

---

>ref|NM_054077.2| Mus musculus proline arginine-rich end leucine-rich repeat (Prelp),
            mRNA
          Length = 3606

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 204  agatgtcgaaggagttcttg 223
            ||||||||||||||||||||
Sbjct: 1000 agatgtcgaaggagttcttg 981

---

>gb|AY286122.1| Cyanidioschyzon merolae DBV201 chromosome 1, complete sequence
          Length = 422021

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 364    gacgcggtagaactggtaggcgat 387
              |||||||||| |||||||||||||
Sbjct: 104556 gacgcggtaggactggtaggcgat 104579

---

>gb|CP000353.1| Ralstonia metallidurans CH34 megaplasmid, complete sequence
          Length = 2580084

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 476     gcggcgccgccggtgggcat 495
               ||||||||||||||||||||
Sbjct: 1855690 gcggcgccgccggtgggcat 1855671

---

>ref|XM_750264.1| Aspergillus fumigatus Af293 NAD-binding Rossmann fold
           oxidoreductase (Afu2g10240) partial mRNA
          Length = 1068

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 462 cctcgcgcatgatggcggcg 481
           ||||||||||||||||||||
Sbjct: 722 cctcgcgcatgatggcggcg 741

---

>gb|AC126792.15| Medicago truncatula clone mth2-8o8, complete sequence
          Length = 105297

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 85   aaactcgacaattttaaaattaca 108
            |||||||||| |||||||||||||
Sbjct: 3778 aaactcgacacttttaaaattaca 3801

---

>emb|X57310.1|NLPCBABC Nocardia lactamdurans pcbAB and pcbC genes for
            alpha-aminoadipyl-L-cysteinyl-D-valine synthetase and
            isopenicillin N synthase
          Length = 12004

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 337  gaggtactgcacctcgccgttggg 360
            |||||||| |||||||||||||||
Sbjct: 5308 gaggtactccacctcgccgttggg 5285

---

>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome
          Length = 4892717

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 462    cctcgcgcatgatggcggcgccgccggt 489
              |||||||||||| |||| ||||||||||
Sbjct: 338723 cctcgcgcatgaaggcgccgccgccggt 338750

---

>emb|X96862.1|HVGEODBIP H.virescens mRNA for general odorant binding protein 1
          Length = 876

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 345 gcacctcgccgttggggaag 364
           ||||||||||||||||||||
Sbjct: 316 gcacctcgccgttggggaag 297

---

>emb|AL939116.1|SCO939116 Streptomyces coelicolor A3(2) complete genome; segment 13/29
          Length = 293050

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 496   ctcgaagacctgctccttgg 515
             ||||||||||||||||||||
Sbjct: 80220 ctcgaagacctgctccttgg 80239



 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 439  ggcgagcttgaggaggttgg 458
            ||||||||||||||||||||
Sbjct: 4098 ggcgagcttgaggaggttgg 4117

---

>emb|AL662779.10| Mouse DNA sequence from clone RP23-177A4 on chromosome 11 Contains the
              Kif2b gene for kinesin family member 28, complete sequence
          Length = 231926

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 59     aaccattatcaccgaatccatcat 82
              |||||||||||| |||||||||||
Sbjct: 212482 aaccattatcacagaatccatcat 212459

---

>gb|AC119073.1| Oryza sativa ssp. japonica cv. Nipponbare OSJNBa0082N20 BAC genomic
              sequence, complete sequence
          Length = 138826

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 298    ggcgttgaccttctccgggt 317
              ||||||||||||||||||||
Sbjct: 128936 ggcgttgaccttctccgggt 128955

---

>gb|AC119071.1| Oryza sativa ssp. japonica cv. Nipponbare OSJNBa0044D15 BAC genomic
           sequence, complete sequence
          Length = 144544

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 298 ggcgttgaccttctccgggt 317
           ||||||||||||||||||||
Sbjct: 574 ggcgttgaccttctccgggt 593

---

>gb|AC008371.4| Drosophila melanogaster, chromosome 2L, region 21D-21D, BAC clone
             BACR22C14, complete sequence
          Length = 163461

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 87    actcgacaattttaaaatta 106
             ||||||||||||||||||||
Sbjct: 30785 actcgacaattttaaaatta 30766

---

>dbj|AK037150.1| Mus musculus 6 days neonate skin cDNA, RIKEN full-length enriched
            library, clone:A030001H09 product:proline arginine-rich
            end leucine-rich repeat, full insert sequence
          Length = 3606

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 204  agatgtcgaaggagttcttg 223
            ||||||||||||||||||||
Sbjct: 1000 agatgtcgaaggagttcttg 981

---

>gb|AC102391.12| Mus musculus chromosome 18, clone RP24-62K22, complete sequence
          Length = 196455

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 509   tccttgggggaggtccaggt 528
             ||||||||||||||||||||
Sbjct: 28955 tccttgggggaggtccaggt 28936

---

>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 298     ggcgttgaccttctccgggt 317
               ||||||||||||||||||||
Sbjct: 6669726 ggcgttgaccttctccgggt 6669745

---

>gb|AC079877.5| Homo sapiens BAC clone RP11-115M4 from 2, complete sequence
          Length = 85297

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 67    tcaccgaatccatcattcaa 86
             ||||||||||||||||||||
Sbjct: 75578 tcaccgaatccatcattcaa 75597

---

>gb|AF543112.1| Drosophila leonis strain 6 xanthine dehydrogenase (Xdh) gene, partial
            cds
          Length = 1566

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 344  tgcacctcgccgttggggaagacg 367
            |||||||||||||||| |||||||
Sbjct: 1352 tgcacctcgccgttggcgaagacg 1329

---

>gb|AF543111.1| Drosophila leonis strain 3 xanthine dehydrogenase (Xdh) gene, partial
            cds
          Length = 1564

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 344  tgcacctcgccgttggggaagacg 367
            |||||||||||||||| |||||||
Sbjct: 1352 tgcacctcgccgttggcgaagacg 1329

---

>dbj|AP005163.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
              clone:OSJNBa0053M06
          Length = 175416

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 474    tggcggcgccgccggtgggc 493
              ||||||||||||||||||||
Sbjct: 124849 tggcggcgccgccggtgggc 124830

---

>dbj|AP004130.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1014_B05
          Length = 121853

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 474   tggcggcgccgccggtgggc 493
             ||||||||||||||||||||
Sbjct: 21726 tggcggcgccgccggtgggc 21707

---

>dbj|AK109468.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-128-C06, full
            insert sequence
          Length = 1654

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 474  tggcggcgccgccggtgggc 493
            ||||||||||||||||||||
Sbjct: 1034 tggcggcgccgccggtgggc 1015

---

>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence
          Length = 5888780

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 541     ctcctcgacctgggccttgc 560
               ||||||||||||||||||||
Sbjct: 4942715 ctcctcgacctgggccttgc 4942696

---

>gb|AF068843.1|AF068843 Streptomyces coelicolor coenzyme B12 dependent isobutyl CoA
           mutase-like protien, UDP-MurNAc L-alanine ligase-like
           protein, and dihydroxy-acid dehydratase (ilvD) genes,
           complete cds
          Length = 2689

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 496 ctcgaagacctgctccttgg 515
           ||||||||||||||||||||
Sbjct: 114 ctcgaagacctgctccttgg 95

---

>gb|AE003590.3| Drosophila melanogaster chromosome 2L, section 1 of 83 of the complete
              sequence
          Length = 305900

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 87     actcgacaattttaaaatta 106
              ||||||||||||||||||||
Sbjct: 206763 actcgacaattttaaaatta 206744

---

>gb|AC161481.4| Mus musculus chromosome 18, clone RP23-336C20, complete sequence
          Length = 210643

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 509    tccttgggggaggtccaggt 528
              ||||||||||||||||||||
Sbjct: 146683 tccttgggggaggtccaggt 146664

---

>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 298     ggcgttgaccttctccgggt 317
               ||||||||||||||||||||
Sbjct: 6736193 ggcgttgaccttctccgggt 6736212

---

>gb|AC005334.1|AC005334 Drosophila melanogaster DNA sequence (P1s DS08221 (D130) and DS00738
             (D271)), complete sequence
          Length = 111448

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 87    actcgacaattttaaaatta 106
             ||||||||||||||||||||
Sbjct: 25553 actcgacaattttaaaatta 25572


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,005,682
Number of Sequences: 3902068
Number of extensions: 4005682
Number of successful extensions: 75903
Number of sequences better than 10.0: 60
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 75022
Number of HSP's gapped (non-prelim): 872
length of query: 568
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 545
effective length of database: 17,143,297,704
effective search space: 9343097248680
effective search space used: 9343097248680
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

---